2021-07-12T12:47:20,578 Created temporary directory: /tmp/pip-ephem-wheel-cache-f8blxofa 2021-07-12T12:47:20,581 Created temporary directory: /tmp/pip-req-tracker-oaq8y8ge 2021-07-12T12:47:20,582 Initialized build tracking at /tmp/pip-req-tracker-oaq8y8ge 2021-07-12T12:47:20,582 Created build tracker: /tmp/pip-req-tracker-oaq8y8ge 2021-07-12T12:47:20,582 Entered build tracker: /tmp/pip-req-tracker-oaq8y8ge 2021-07-12T12:47:20,583 Created temporary directory: /tmp/pip-wheel-3wri_1kh 2021-07-12T12:47:20,612 1 location(s) to search for versions of molmod: 2021-07-12T12:47:20,612 * https://pypi.org/simple/molmod/ 2021-07-12T12:47:20,612 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-12T12:47:20,613 Getting page https://pypi.org/simple/molmod/ 2021-07-12T12:47:20,614 Found index url https://pypi.org/simple 2021-07-12T12:47:20,708 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-12T12:47:20,708 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-12T12:47:20,709 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-12T12:47:20,709 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-12T12:47:20,709 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-12T12:47:20,710 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-12T12:47:20,710 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-12T12:47:20,710 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-12T12:47:20,710 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-12T12:47:20,711 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-12T12:47:20,711 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-12T12:47:20,711 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-12T12:47:20,712 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-12T12:47:20,712 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-12T12:47:20,712 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-12T12:47:20,713 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-12T12:47:20,713 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-12T12:47:20,732 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-12T12:47:20,751 Collecting molmod==1.3.4 2021-07-12T12:47:20,753 Created temporary directory: /tmp/pip-unpack-ynfgevpe 2021-07-12T12:47:21,212 Downloading molmod-1.3.4.tar.gz (1.7 MB) 2021-07-12T12:47:22,123 Added molmod==1.3.4 from https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 to build tracker '/tmp/pip-req-tracker-oaq8y8ge' 2021-07-12T12:47:22,124 Running setup.py (path:/tmp/pip-wheel-3wri_1kh/molmod_795d107ba76845d5a518f930669a7d28/setup.py) egg_info for package molmod 2021-07-12T12:47:22,125 Created temporary directory: /tmp/pip-pip-egg-info-ougl9xo8 2021-07-12T12:47:22,125 Running command python setup.py egg_info 2021-07-12T12:47:23,443 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:47:23,625 running egg_info 2021-07-12T12:47:23,628 creating /tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info 2021-07-12T12:47:23,629 writing /tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/PKG-INFO 2021-07-12T12:47:23,631 writing dependency_links to /tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/dependency_links.txt 2021-07-12T12:47:23,632 writing requirements to /tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/requires.txt 2021-07-12T12:47:23,633 writing top-level names to /tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/top_level.txt 2021-07-12T12:47:23,635 writing manifest file '/tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:23,792 reading manifest file '/tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:23,793 reading manifest template 'MANIFEST.in' 2021-07-12T12:47:24,124 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:47:24,182 adding license file 'LICENSE.txt' 2021-07-12T12:47:24,192 writing manifest file '/tmp/pip-pip-egg-info-ougl9xo8/molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:24,310 Source in /tmp/pip-wheel-3wri_1kh/molmod_795d107ba76845d5a518f930669a7d28 has version 1.3.4, which satisfies requirement molmod==1.3.4 from https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 2021-07-12T12:47:24,311 Removed molmod==1.3.4 from https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 from build tracker '/tmp/pip-req-tracker-oaq8y8ge' 2021-07-12T12:47:24,315 Created temporary directory: /tmp/pip-unpack-f_k0_ehe 2021-07-12T12:47:24,316 Building wheels for collected packages: molmod 2021-07-12T12:47:24,320 Created temporary directory: /tmp/pip-wheel-q9tuywqk 2021-07-12T12:47:24,321 Building wheel for molmod (setup.py): started 2021-07-12T12:47:24,321 Destination directory: /tmp/pip-wheel-q9tuywqk 2021-07-12T12:47:24,321 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3wri_1kh/molmod_795d107ba76845d5a518f930669a7d28/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3wri_1kh/molmod_795d107ba76845d5a518f930669a7d28/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-q9tuywqk 2021-07-12T12:47:25,611 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:47:25,805 running bdist_wheel 2021-07-12T12:47:25,810 running build 2021-07-12T12:47:25,810 running build_py 2021-07-12T12:47:25,946 creating build 2021-07-12T12:47:25,946 creating build/lib.linux-armv7l-3.9 2021-07-12T12:47:25,947 creating build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,948 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,951 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,953 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,955 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,957 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,960 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,962 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,963 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,965 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,967 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,971 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,973 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,976 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,979 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,981 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,986 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,989 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,991 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,994 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:25,997 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,000 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,003 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,008 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,011 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,013 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,015 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,020 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,021 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,023 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,026 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,029 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,032 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,034 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,037 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,039 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,041 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,043 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,046 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,049 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,051 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,054 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,057 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,060 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,062 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,065 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,068 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,071 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,073 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,076 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,079 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,082 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:26,086 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,087 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,090 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,093 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,095 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,098 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,101 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,103 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,106 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,109 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,112 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,114 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,118 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,121 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,123 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,126 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,129 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,131 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,134 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,137 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:26,142 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,143 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,146 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,148 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,151 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,153 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,156 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,158 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,161 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,163 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,166 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,168 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,170 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,172 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,174 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,177 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,180 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,182 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:26,184 running egg_info 2021-07-12T12:47:26,200 writing molmod.egg-info/PKG-INFO 2021-07-12T12:47:26,202 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-12T12:47:26,204 writing requirements to molmod.egg-info/requires.txt 2021-07-12T12:47:26,206 writing top-level names to molmod.egg-info/top_level.txt 2021-07-12T12:47:26,219 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:26,226 reading manifest template 'MANIFEST.in' 2021-07-12T12:47:26,595 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:47:26,653 adding license file 'LICENSE.txt' 2021-07-12T12:47:26,669 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:26,686 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,688 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,691 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,693 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,696 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,698 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,700 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,703 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,705 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,707 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,710 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,712 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,715 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,718 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,720 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,723 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,726 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,728 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:26,730 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,731 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,734 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,737 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,751 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,767 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,770 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,773 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:26,777 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,778 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,782 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,798 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,801 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,804 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,807 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,833 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,835 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,838 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,840 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,843 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,845 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,848 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,850 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,853 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,855 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,858 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,861 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,864 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,867 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,881 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,883 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,886 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,889 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,905 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,908 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,910 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,912 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,915 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,919 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,921 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,924 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,926 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,928 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,931 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,933 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,936 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,938 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,946 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,949 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,952 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,954 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,957 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,960 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,962 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,965 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,967 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,970 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,973 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,976 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,978 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,981 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,983 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,990 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,994 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:26,997 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:27,000 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:27,002 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:27,004 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:27,007 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:27,010 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:27,012 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-12T12:47:27,013 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:27,014 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:27,017 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:27,019 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:27,021 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,022 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,025 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,027 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,030 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,032 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,035 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:27,038 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,039 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,042 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,044 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,047 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,049 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,051 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:27,054 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,055 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,058 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,060 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,063 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,066 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,069 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,072 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:27,074 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:27,076 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:27,079 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:27,081 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:27,083 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:27,086 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:27,096 running build_ext 2021-07-12T12:47:27,101 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-12T12:47:27,729 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3wri_1kh/molmod_795d107ba76845d5a518f930669a7d28/molmod/ext.pyx 2021-07-12T12:47:27,730 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:47:35,131 building 'molmod.ext' extension 2021-07-12T12:47:35,133 creating build/temp.linux-armv7l-3.9 2021-07-12T12:47:35,133 creating build/temp.linux-armv7l-3.9/molmod 2021-07-12T12:47:35,135 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-12T12:47:35,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-12T12:47:35,798 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:47:35,798 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:47:35,798 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:47:35,799 from molmod/ext.c:612: 2021-07-12T12:47:35,799 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:47:35,799 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:47:35,799 | ^~~~~~~ 2021-07-12T12:47:35,878 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-12T12:47:35,880 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,880 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,880 | ^~ 2021-07-12T12:47:35,881 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,881 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,881 | ^~ 2021-07-12T12:47:35,883 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,883 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,883 | ^~ 2021-07-12T12:47:35,884 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,884 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,884 | ^~ 2021-07-12T12:47:35,922 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-12T12:47:35,923 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,923 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,924 | ^~ 2021-07-12T12:47:35,926 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,926 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,926 | ^~ 2021-07-12T12:47:35,927 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,928 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:47:35,928 | ^~ 2021-07-12T12:47:35,973 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-12T12:47:35,976 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:35,976 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:47:35,976 | ^~ 2021-07-12T12:47:36,023 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-12T12:47:36,026 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:36,026 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:47:36,026 | ^~ 2021-07-12T12:47:36,075 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-12T12:47:36,078 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:36,078 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-12T12:47:36,078 | ^~ 2021-07-12T12:47:36,138 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-12T12:47:36,141 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:47:36,141 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-12T12:47:36,142 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:47:36,142 In file included from molmod/ext.c:623: 2021-07-12T12:47:36,142 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-12T12:47:36,142 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-12T12:47:36,142 | ~~~~~~^~~~~~ 2021-07-12T12:47:36,143 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-12T12:47:36,147 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:36,147 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-12T12:47:36,147 | ^~ 2021-07-12T12:47:36,162 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:47:36,162 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-12T12:47:36,162 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:47:36,162 In file included from molmod/ext.c:623: 2021-07-12T12:47:36,162 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-12T12:47:36,162 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-12T12:47:36,163 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-12T12:47:36,169 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-12T12:47:36,172 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:36,173 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-12T12:47:36,173 | ^~ 2021-07-12T12:47:36,177 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:36,177 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-12T12:47:36,177 | ^~ 2021-07-12T12:47:52,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-12T12:47:52,774 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-12T12:47:52,907 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-12T12:47:53,070 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-12T12:47:53,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-12T12:47:53,649 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:47:53,847 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:47:53,847 running install 2021-07-12T12:47:53,848 running install_lib 2021-07-12T12:47:53,853 creating build/bdist.linux-armv7l 2021-07-12T12:47:53,854 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:47:53,856 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,857 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,860 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,861 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,864 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,866 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,869 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,871 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,873 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,876 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,877 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,880 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,882 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,884 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,887 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-12T12:47:53,888 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:53,889 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:53,892 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:53,894 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:53,897 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,898 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,900 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,902 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,904 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,906 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,908 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:53,911 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:53,911 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:53,914 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:53,916 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:53,918 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:53,920 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:53,923 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,924 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,926 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,928 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,930 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,932 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,934 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:53,937 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,937 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,940 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,943 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,945 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,947 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,949 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,952 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:53,954 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,956 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,958 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,960 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,962 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,965 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,967 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,969 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:53,972 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,973 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,975 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,978 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,980 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,983 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,985 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,988 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,989 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,992 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,994 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,996 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:53,999 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,001 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,004 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,006 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,009 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,011 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,014 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,016 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,019 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,021 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,023 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,025 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,027 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:54,029 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,032 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,034 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,037 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,039 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,041 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,043 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,047 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,050 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,051 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,054 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,056 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,059 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,061 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,065 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,065 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,068 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,070 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,071 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,074 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,076 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,078 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,081 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,083 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,085 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,087 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,089 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,091 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,093 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,095 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,097 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,099 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:54,101 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,104 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,107 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,110 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,113 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,116 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,118 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,121 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,124 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,128 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,131 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,134 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,138 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,141 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:54,144 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,147 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,150 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,153 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,156 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,158 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,162 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,165 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,166 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,169 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,173 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,176 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,190 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,190 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,192 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,200 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,202 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,204 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,205 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,207 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,209 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,211 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,212 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,214 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,217 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,221 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,223 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,226 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,228 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,231 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,239 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,241 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,243 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,267 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,269 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,272 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,285 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,287 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,288 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,291 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,292 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,295 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,297 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,299 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,301 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,303 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,305 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,307 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,310 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,312 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,315 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,333 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,335 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,337 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,351 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,354 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,356 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,358 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,359 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,361 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,363 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,365 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,367 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,370 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,373 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,375 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,377 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,379 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,381 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,383 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,384 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,386 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,388 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,390 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:54,393 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,395 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,399 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:54,415 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,417 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,421 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,454 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,457 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,459 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,460 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,462 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,464 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:54,466 running install_egg_info 2021-07-12T12:47:54,476 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.3.4-py3.9.egg-info 2021-07-12T12:47:54,491 running install_scripts 2021-07-12T12:47:54,534 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T12:47:54,540 creating build/bdist.linux-armv7l/wheel/molmod-1.3.4.dist-info/WHEEL 2021-07-12T12:47:54,542 creating '/tmp/pip-wheel-q9tuywqk/molmod-1.3.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:47:54,546 adding 'molmod/__init__.py' 2021-07-12T12:47:54,548 adding 'molmod/binning.py' 2021-07-12T12:47:54,550 adding 'molmod/bonds.py' 2021-07-12T12:47:54,551 adding 'molmod/clusters.py' 2021-07-12T12:47:54,553 adding 'molmod/common.c' 2021-07-12T12:47:54,554 adding 'molmod/common.h' 2021-07-12T12:47:54,555 adding 'molmod/constants.py' 2021-07-12T12:47:54,780 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:47:54,791 adding 'molmod/ext.pyx' 2021-07-12T12:47:54,792 adding 'molmod/ff.c' 2021-07-12T12:47:54,793 adding 'molmod/ff.h' 2021-07-12T12:47:54,794 adding 'molmod/ff.pxd' 2021-07-12T12:47:54,796 adding 'molmod/graphs.c' 2021-07-12T12:47:54,797 adding 'molmod/graphs.h' 2021-07-12T12:47:54,798 adding 'molmod/graphs.pxd' 2021-07-12T12:47:54,808 adding 'molmod/graphs.py' 2021-07-12T12:47:54,811 adding 'molmod/ic.py' 2021-07-12T12:47:54,813 adding 'molmod/isotopes.py' 2021-07-12T12:47:54,815 adding 'molmod/log.py' 2021-07-12T12:47:54,824 adding 'molmod/minimizer.py' 2021-07-12T12:47:54,827 adding 'molmod/molecular_graphs.py' 2021-07-12T12:47:54,829 adding 'molmod/molecules.c' 2021-07-12T12:47:54,830 adding 'molmod/molecules.h' 2021-07-12T12:47:54,831 adding 'molmod/molecules.pxd' 2021-07-12T12:47:54,833 adding 'molmod/molecules.py' 2021-07-12T12:47:54,835 adding 'molmod/pairff.py' 2021-07-12T12:47:54,837 adding 'molmod/periodic.py' 2021-07-12T12:47:54,838 adding 'molmod/quaternions.py' 2021-07-12T12:47:54,840 adding 'molmod/randomize.py' 2021-07-12T12:47:54,842 adding 'molmod/similarity.c' 2021-07-12T12:47:54,843 adding 'molmod/similarity.h' 2021-07-12T12:47:54,844 adding 'molmod/similarity.pxd' 2021-07-12T12:47:54,846 adding 'molmod/similarity.py' 2021-07-12T12:47:54,847 adding 'molmod/symmetry.py' 2021-07-12T12:47:54,849 adding 'molmod/toyff.py' 2021-07-12T12:47:54,851 adding 'molmod/transformations.py' 2021-07-12T12:47:54,853 adding 'molmod/unit_cells.c' 2021-07-12T12:47:54,854 adding 'molmod/unit_cells.h' 2021-07-12T12:47:54,855 adding 'molmod/unit_cells.pxd' 2021-07-12T12:47:54,857 adding 'molmod/unit_cells.py' 2021-07-12T12:47:54,859 adding 'molmod/units.py' 2021-07-12T12:47:54,861 adding 'molmod/utils.py' 2021-07-12T12:47:54,863 adding 'molmod/vectors.py' 2021-07-12T12:47:54,864 adding 'molmod/version.py' 2021-07-12T12:47:54,866 adding 'molmod/zmatrix.py' 2021-07-12T12:47:54,868 adding 'molmod/data/bonds.csv' 2021-07-12T12:47:54,870 adding 'molmod/data/bonds.ods' 2021-07-12T12:47:54,954 adding 'molmod/data/mass.mas03' 2021-07-12T12:47:55,039 adding 'molmod/data/nubtab03.asc' 2021-07-12T12:47:55,045 adding 'molmod/data/periodic.csv' 2021-07-12T12:47:55,048 adding 'molmod/data/periodic.ods' 2021-07-12T12:47:55,063 adding 'molmod/data/toyff_angles.txt' 2021-07-12T12:47:55,070 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-12T12:47:55,202 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-12T12:47:55,208 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-12T12:47:55,209 adding 'molmod/data/test/5ringOH.xyz' 2021-07-12T12:47:55,210 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-12T12:47:55,452 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-12T12:47:55,460 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-12T12:47:55,462 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-12T12:47:55,463 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-12T12:47:55,464 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-12T12:47:55,466 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-12T12:47:55,467 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-12T12:47:55,468 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-12T12:47:55,470 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-12T12:47:55,471 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-12T12:47:55,472 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-12T12:47:55,474 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-12T12:47:55,477 adding 'molmod/data/test/alanine.cube' 2021-07-12T12:47:55,478 adding 'molmod/data/test/argon.xyz' 2021-07-12T12:47:55,554 adding 'molmod/data/test/bartek.atrj' 2021-07-12T12:47:55,558 adding 'molmod/data/test/benzene.xyz' 2021-07-12T12:47:55,559 adding 'molmod/data/test/butane.xyz' 2021-07-12T12:47:55,560 adding 'molmod/data/test/caplayer.cml' 2021-07-12T12:47:55,626 adding 'molmod/data/test/crystal_api.out' 2021-07-12T12:47:55,631 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-12T12:47:55,632 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-12T12:47:55,634 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-12T12:47:55,635 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-12T12:47:55,640 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-12T12:47:55,641 adding 'molmod/data/test/dopamine.xyz' 2021-07-12T12:47:55,642 adding 'molmod/data/test/ethane.xyz' 2021-07-12T12:47:55,644 adding 'molmod/data/test/ethene.xyz' 2021-07-12T12:47:55,645 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-12T12:47:55,646 adding 'molmod/data/test/example.sdf' 2021-07-12T12:47:55,647 adding 'molmod/data/test/formol.xyz' 2021-07-12T12:47:55,648 adding 'molmod/data/test/funny.xyz' 2021-07-12T12:47:55,650 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-12T12:47:55,680 adding 'molmod/data/test/il2.pdb' 2021-07-12T12:47:55,684 adding 'molmod/data/test/lammps_dump.txt' 2021-07-12T12:47:55,686 adding 'molmod/data/test/lau.xyz' 2021-07-12T12:47:55,687 adding 'molmod/data/test/octane.xyz' 2021-07-12T12:47:55,688 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-12T12:47:55,689 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-12T12:47:55,691 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-12T12:47:55,692 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-12T12:47:55,693 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-12T12:47:55,694 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-12T12:47:55,696 adding 'molmod/data/test/pentapeptide.psf' 2021-07-12T12:47:55,698 adding 'molmod/data/test/precursor.xyz' 2021-07-12T12:47:55,699 adding 'molmod/data/test/probes.xyz' 2021-07-12T12:47:55,700 adding 'molmod/data/test/tea.xyz' 2021-07-12T12:47:55,701 adding 'molmod/data/test/tetra.xyz' 2021-07-12T12:47:55,723 adding 'molmod/data/test/thf.psf' 2021-07-12T12:47:55,731 adding 'molmod/data/test/thf.xyz' 2021-07-12T12:47:55,732 adding 'molmod/data/test/thf_64.cell' 2021-07-12T12:47:55,733 adding 'molmod/data/test/thf_single.xyz' 2021-07-12T12:47:55,735 adding 'molmod/data/test/tpa.xyz' 2021-07-12T12:47:55,736 adding 'molmod/data/test/water.xyz' 2021-07-12T12:47:55,737 adding 'molmod/data/test/water2.gro' 2021-07-12T12:47:55,738 adding 'molmod/data/test/water_md.inp' 2021-07-12T12:47:55,739 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-12T12:47:55,742 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-12T12:47:55,743 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-12T12:47:55,744 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-12T12:47:55,746 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-12T12:47:55,747 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-12T12:47:55,748 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-12T12:47:55,749 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-12T12:47:55,750 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-12T12:47:55,752 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-12T12:47:55,754 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-12T12:47:55,755 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-12T12:47:55,757 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-12T12:47:55,758 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-12T12:47:55,759 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-12T12:47:55,760 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-12T12:47:55,762 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-12T12:47:55,764 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-12T12:47:55,765 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-12T12:47:55,767 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-12T12:47:55,777 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-12T12:47:55,779 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-12T12:47:55,780 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-12T12:47:55,782 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-12T12:47:55,783 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-12T12:47:55,784 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-12T12:47:55,786 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-12T12:47:55,787 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-12T12:47:55,789 adding 'molmod/io/__init__.py' 2021-07-12T12:47:55,791 adding 'molmod/io/atrj.py' 2021-07-12T12:47:55,792 adding 'molmod/io/chk.py' 2021-07-12T12:47:55,794 adding 'molmod/io/cml.py' 2021-07-12T12:47:55,796 adding 'molmod/io/common.py' 2021-07-12T12:47:55,798 adding 'molmod/io/cp2k.py' 2021-07-12T12:47:55,800 adding 'molmod/io/cpmd.py' 2021-07-12T12:47:55,801 adding 'molmod/io/crystal.py' 2021-07-12T12:47:55,803 adding 'molmod/io/cube.py' 2021-07-12T12:47:55,806 adding 'molmod/io/dlpoly.py' 2021-07-12T12:47:55,807 adding 'molmod/io/fchk.py' 2021-07-12T12:47:55,809 adding 'molmod/io/gamess.py' 2021-07-12T12:47:55,811 adding 'molmod/io/gromacs.py' 2021-07-12T12:47:55,812 adding 'molmod/io/lammps.py' 2021-07-12T12:47:55,814 adding 'molmod/io/number_state.py' 2021-07-12T12:47:55,816 adding 'molmod/io/pdb.py' 2021-07-12T12:47:55,819 adding 'molmod/io/psf.py' 2021-07-12T12:47:55,820 adding 'molmod/io/sdf.py' 2021-07-12T12:47:55,822 adding 'molmod/io/xyz.py' 2021-07-12T12:47:55,825 adding 'molmod/io/test/__init__.py' 2021-07-12T12:47:55,826 adding 'molmod/io/test/test_atrj.py' 2021-07-12T12:47:55,827 adding 'molmod/io/test/test_cml.py' 2021-07-12T12:47:55,829 adding 'molmod/io/test/test_cp2k.py' 2021-07-12T12:47:55,830 adding 'molmod/io/test/test_cpmd.py' 2021-07-12T12:47:55,832 adding 'molmod/io/test/test_crystal.py' 2021-07-12T12:47:55,833 adding 'molmod/io/test/test_cube.py' 2021-07-12T12:47:55,834 adding 'molmod/io/test/test_dlpoly.py' 2021-07-12T12:47:55,836 adding 'molmod/io/test/test_fchk.py' 2021-07-12T12:47:55,837 adding 'molmod/io/test/test_gamess.py' 2021-07-12T12:47:55,838 adding 'molmod/io/test/test_gromacs.py' 2021-07-12T12:47:55,840 adding 'molmod/io/test/test_lammps.py' 2021-07-12T12:47:55,841 adding 'molmod/io/test/test_number_state.py' 2021-07-12T12:47:55,843 adding 'molmod/io/test/test_pdb.py' 2021-07-12T12:47:55,844 adding 'molmod/io/test/test_psf.py' 2021-07-12T12:47:55,846 adding 'molmod/io/test/test_sdf.py' 2021-07-12T12:47:55,847 adding 'molmod/io/test/test_xyz.py' 2021-07-12T12:47:55,850 adding 'molmod/test/__init__.py' 2021-07-12T12:47:55,851 adding 'molmod/test/common.py' 2021-07-12T12:47:55,853 adding 'molmod/test/test_binning.py' 2021-07-12T12:47:55,854 adding 'molmod/test/test_clusters.py' 2021-07-12T12:47:55,856 adding 'molmod/test/test_data.py' 2021-07-12T12:47:55,857 adding 'molmod/test/test_examples.py' 2021-07-12T12:47:55,860 adding 'molmod/test/test_graphs.py' 2021-07-12T12:47:55,862 adding 'molmod/test/test_ic.py' 2021-07-12T12:47:55,864 adding 'molmod/test/test_log.py' 2021-07-12T12:47:55,866 adding 'molmod/test/test_minimizer.py' 2021-07-12T12:47:55,869 adding 'molmod/test/test_molecular_graphs.py' 2021-07-12T12:47:55,871 adding 'molmod/test/test_molecules.py' 2021-07-12T12:47:55,873 adding 'molmod/test/test_pairff.py' 2021-07-12T12:47:55,875 adding 'molmod/test/test_quaternions.py' 2021-07-12T12:47:55,876 adding 'molmod/test/test_randomize.py' 2021-07-12T12:47:55,878 adding 'molmod/test/test_similarity.py' 2021-07-12T12:47:55,879 adding 'molmod/test/test_symmetry.py' 2021-07-12T12:47:55,881 adding 'molmod/test/test_toyff.py' 2021-07-12T12:47:55,883 adding 'molmod/test/test_transformations.py' 2021-07-12T12:47:55,886 adding 'molmod/test/test_unit_cells.py' 2021-07-12T12:47:55,887 adding 'molmod/test/test_units.py' 2021-07-12T12:47:55,888 adding 'molmod/test/test_utils.py' 2021-07-12T12:47:55,890 adding 'molmod/test/test_vectors.py' 2021-07-12T12:47:55,892 adding 'molmod/test/test_zmatrix.py' 2021-07-12T12:47:55,899 adding 'molmod-1.3.4.dist-info/LICENSE.txt' 2021-07-12T12:47:55,900 adding 'molmod-1.3.4.dist-info/METADATA' 2021-07-12T12:47:55,901 adding 'molmod-1.3.4.dist-info/WHEEL' 2021-07-12T12:47:55,902 adding 'molmod-1.3.4.dist-info/top_level.txt' 2021-07-12T12:47:55,905 adding 'molmod-1.3.4.dist-info/RECORD' 2021-07-12T12:47:55,938 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:47:56,402 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-12T12:47:56,429 Created wheel for molmod: filename=molmod-1.3.4-cp39-cp39-linux_armv7l.whl size=1953977 sha256=b8268442b07783fb4cd0165ef1c9f4acb29db4ac8515594777e839f630810453 2021-07-12T12:47:56,429 Stored in directory: /tmp/pip-ephem-wheel-cache-f8blxofa/wheels/26/f9/ec/63785f5ffadbaa8ac314a477b3302736d72a9a61cbf85f6bca 2021-07-12T12:47:56,446 Successfully built molmod 2021-07-12T12:47:56,508 Removed build tracker: '/tmp/pip-req-tracker-oaq8y8ge'