2021-07-12T12:47:23,247 Created temporary directory: /tmp/pip-ephem-wheel-cache-bfr6wten 2021-07-12T12:47:23,250 Created temporary directory: /tmp/pip-req-tracker-5at3vcd_ 2021-07-12T12:47:23,250 Initialized build tracking at /tmp/pip-req-tracker-5at3vcd_ 2021-07-12T12:47:23,250 Created build tracker: /tmp/pip-req-tracker-5at3vcd_ 2021-07-12T12:47:23,251 Entered build tracker: /tmp/pip-req-tracker-5at3vcd_ 2021-07-12T12:47:23,251 Created temporary directory: /tmp/pip-wheel-lj959j2q 2021-07-12T12:47:23,281 1 location(s) to search for versions of molmod: 2021-07-12T12:47:23,281 * https://pypi.org/simple/molmod/ 2021-07-12T12:47:23,281 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-12T12:47:23,282 Getting page https://pypi.org/simple/molmod/ 2021-07-12T12:47:23,283 Found index url https://pypi.org/simple 2021-07-12T12:47:23,378 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-12T12:47:23,378 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-12T12:47:23,379 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-12T12:47:23,379 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-12T12:47:23,379 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-12T12:47:23,380 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-12T12:47:23,380 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-12T12:47:23,380 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-12T12:47:23,380 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-12T12:47:23,381 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-12T12:47:23,381 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-12T12:47:23,381 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-12T12:47:23,382 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-12T12:47:23,382 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-12T12:47:23,382 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-12T12:47:23,382 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-12T12:47:23,383 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-12T12:47:23,402 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-12T12:47:23,421 Collecting molmod==1.3.5 2021-07-12T12:47:23,423 Created temporary directory: /tmp/pip-unpack-ndt3v3nh 2021-07-12T12:47:23,902 Downloading molmod-1.3.5.tar.gz (1.7 MB) 2021-07-12T12:47:24,838 Added molmod==1.3.5 from https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c to build tracker '/tmp/pip-req-tracker-5at3vcd_' 2021-07-12T12:47:24,839 Running setup.py (path:/tmp/pip-wheel-lj959j2q/molmod_58269b7e9485497985597c66653eb3db/setup.py) egg_info for package molmod 2021-07-12T12:47:24,840 Created temporary directory: /tmp/pip-pip-egg-info-fmybkvbd 2021-07-12T12:47:24,840 Running command python setup.py egg_info 2021-07-12T12:47:26,290 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:47:26,502 running egg_info 2021-07-12T12:47:26,505 creating /tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info 2021-07-12T12:47:26,506 writing /tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/PKG-INFO 2021-07-12T12:47:26,508 writing dependency_links to /tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/dependency_links.txt 2021-07-12T12:47:26,510 writing requirements to /tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/requires.txt 2021-07-12T12:47:26,510 writing top-level names to /tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/top_level.txt 2021-07-12T12:47:26,512 writing manifest file '/tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:26,705 reading manifest file '/tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:26,707 reading manifest template 'MANIFEST.in' 2021-07-12T12:47:27,072 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:47:27,133 adding license file 'LICENSE.txt' 2021-07-12T12:47:27,145 writing manifest file '/tmp/pip-pip-egg-info-fmybkvbd/molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:27,267 Source in /tmp/pip-wheel-lj959j2q/molmod_58269b7e9485497985597c66653eb3db has version 1.3.5, which satisfies requirement molmod==1.3.5 from https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c 2021-07-12T12:47:27,268 Removed molmod==1.3.5 from https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c from build tracker '/tmp/pip-req-tracker-5at3vcd_' 2021-07-12T12:47:27,272 Created temporary directory: /tmp/pip-unpack-3maaqe8c 2021-07-12T12:47:27,272 Building wheels for collected packages: molmod 2021-07-12T12:47:27,276 Created temporary directory: /tmp/pip-wheel-x9mu1wha 2021-07-12T12:47:27,277 Building wheel for molmod (setup.py): started 2021-07-12T12:47:27,277 Destination directory: /tmp/pip-wheel-x9mu1wha 2021-07-12T12:47:27,277 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-lj959j2q/molmod_58269b7e9485497985597c66653eb3db/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-lj959j2q/molmod_58269b7e9485497985597c66653eb3db/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x9mu1wha 2021-07-12T12:47:28,685 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:47:28,913 running bdist_wheel 2021-07-12T12:47:28,918 running build 2021-07-12T12:47:28,918 running build_py 2021-07-12T12:47:29,053 creating build 2021-07-12T12:47:29,054 creating build/lib.linux-armv7l-3.9 2021-07-12T12:47:29,054 creating build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,056 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,058 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,061 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,065 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,067 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,070 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,072 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,075 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,077 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,080 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,082 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,084 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,085 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,090 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,092 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,094 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,096 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,099 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,101 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,103 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,105 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,107 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,109 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,112 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,114 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,117 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,120 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,121 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,123 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,126 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,128 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,129 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,132 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,134 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,136 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,139 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,141 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,143 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,145 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,148 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,150 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,152 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,154 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,156 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,158 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,159 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,162 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,164 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,166 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,168 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,170 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:47:29,173 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,175 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,177 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,179 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,181 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,183 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,185 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,188 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,190 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,192 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,195 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,197 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,199 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,201 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,204 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,205 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,208 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,210 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,212 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,215 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:47:29,218 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,218 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,220 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,222 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,224 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,226 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,227 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,230 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,231 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,233 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,235 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,237 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,239 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,241 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,242 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,244 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,246 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,248 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:47:29,250 running egg_info 2021-07-12T12:47:29,288 writing molmod.egg-info/PKG-INFO 2021-07-12T12:47:29,290 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-12T12:47:29,291 writing requirements to molmod.egg-info/requires.txt 2021-07-12T12:47:29,292 writing top-level names to molmod.egg-info/top_level.txt 2021-07-12T12:47:29,336 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:29,344 reading manifest template 'MANIFEST.in' 2021-07-12T12:47:29,682 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:47:29,738 adding license file 'LICENSE.txt' 2021-07-12T12:47:29,752 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:47:29,768 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,770 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,772 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,775 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,778 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,780 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,782 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,784 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,786 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,788 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,790 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,792 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,795 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,797 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,799 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,801 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,803 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,806 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:47:29,808 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,809 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,811 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,814 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,826 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,841 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,844 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,847 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:47:29,851 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,851 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,855 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,870 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,873 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,875 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,877 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,902 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,904 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,906 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,908 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,911 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,913 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,915 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,917 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,919 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,921 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,923 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,925 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,928 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,930 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,940 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,943 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,945 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,948 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,961 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,964 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,966 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,968 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,970 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,974 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,976 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,978 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,980 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,981 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,984 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,986 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,988 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,991 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:29,999 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,002 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,005 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,008 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,010 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,012 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,015 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,017 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,019 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,021 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,024 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,027 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,030 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,032 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,034 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,041 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,045 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,047 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,050 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,052 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,055 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,057 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,059 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:47:30,062 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-12T12:47:30,062 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:30,063 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:30,066 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:30,068 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:47:30,070 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,071 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,074 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,076 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,078 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,081 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,083 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:47:30,086 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,087 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,090 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,092 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,095 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,098 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,100 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:47:30,103 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,104 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,106 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,109 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,112 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,115 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,119 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,121 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:47:30,124 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:30,125 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:30,127 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:30,129 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:30,132 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:30,135 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:47:30,145 running build_ext 2021-07-12T12:47:30,151 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-12T12:47:30,765 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-lj959j2q/molmod_58269b7e9485497985597c66653eb3db/molmod/ext.pyx 2021-07-12T12:47:30,765 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:47:38,150 building 'molmod.ext' extension 2021-07-12T12:47:38,151 creating build/temp.linux-armv7l-3.9 2021-07-12T12:47:38,152 creating build/temp.linux-armv7l-3.9/molmod 2021-07-12T12:47:38,153 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-12T12:47:38,397 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-12T12:47:38,879 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:47:38,879 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:47:38,880 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:47:38,880 from molmod/ext.c:612: 2021-07-12T12:47:38,880 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:47:38,880 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:47:38,880 | ^~~~~~~ 2021-07-12T12:47:38,957 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-12T12:47:38,958 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:38,959 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:38,959 | ^~ 2021-07-12T12:47:38,960 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:38,960 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:47:38,960 | ^~ 2021-07-12T12:47:38,962 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:38,962 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:38,962 | ^~ 2021-07-12T12:47:38,963 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:38,963 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:47:38,963 | ^~ 2021-07-12T12:47:39,000 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-12T12:47:39,002 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,002 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:39,002 | ^~ 2021-07-12T12:47:39,004 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,004 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:47:39,004 | ^~ 2021-07-12T12:47:39,006 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,006 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:47:39,006 | ^~ 2021-07-12T12:47:39,052 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-12T12:47:39,054 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,054 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:47:39,054 | ^~ 2021-07-12T12:47:39,102 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-12T12:47:39,104 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,104 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:47:39,104 | ^~ 2021-07-12T12:47:39,153 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-12T12:47:39,156 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,156 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-12T12:47:39,156 | ^~ 2021-07-12T12:47:39,215 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-12T12:47:39,219 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:47:39,219 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-12T12:47:39,219 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:47:39,219 In file included from molmod/ext.c:623: 2021-07-12T12:47:39,219 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-12T12:47:39,220 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-12T12:47:39,220 | ~~~~~~^~~~~~ 2021-07-12T12:47:39,221 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-12T12:47:39,224 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,224 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-12T12:47:39,225 | ^~ 2021-07-12T12:47:39,239 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:47:39,239 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-12T12:47:39,239 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:47:39,240 In file included from molmod/ext.c:623: 2021-07-12T12:47:39,240 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-12T12:47:39,240 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-12T12:47:39,240 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-12T12:47:39,246 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-12T12:47:39,250 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,250 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-12T12:47:39,250 | ^~ 2021-07-12T12:47:39,254 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:47:39,255 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-12T12:47:39,255 | ^~ 2021-07-12T12:47:55,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-12T12:47:55,709 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-12T12:47:55,838 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-12T12:47:55,999 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-12T12:47:56,228 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-12T12:47:56,567 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:47:56,772 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:47:56,772 running install 2021-07-12T12:47:56,774 running install_lib 2021-07-12T12:47:56,780 creating build/bdist.linux-armv7l 2021-07-12T12:47:56,780 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:47:56,783 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,784 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,787 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,790 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,795 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,798 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,798 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,801 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,803 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,806 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,808 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,811 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,813 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,816 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,819 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,822 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,824 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,827 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,830 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,831 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,834 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,836 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,838 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,840 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,842 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,845 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,848 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,850 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,852 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,854 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,857 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,859 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,861 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,863 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,866 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,868 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:47:56,870 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,873 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,876 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,878 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,881 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,884 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,887 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:47:56,890 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-12T12:47:56,892 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,893 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,896 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,898 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,900 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,901 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,903 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:47:56,906 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,907 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,909 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,911 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,913 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,915 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,917 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,921 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:47:56,924 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:56,925 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:56,927 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:56,929 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:47:56,932 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:56,933 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:56,936 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:56,938 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:56,939 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:56,941 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:47:56,944 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,945 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,947 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,949 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,951 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,953 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,955 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:47:56,957 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,959 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,962 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,965 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,967 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,970 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,972 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,975 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,978 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,980 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,982 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,984 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,986 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,988 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,993 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,995 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,996 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:56,999 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,000 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,002 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,005 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,007 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,009 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,012 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,015 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,017 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,020 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,022 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,025 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,027 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,030 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,032 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,035 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,037 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,039 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,041 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,043 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,045 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,048 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,050 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,052 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,056 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:47:57,058 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,060 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,063 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,065 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,067 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,069 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,072 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,074 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,077 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,079 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,081 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,083 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,086 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,088 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,092 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,093 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,096 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,099 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,104 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,106 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,121 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,122 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,124 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,126 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,128 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,140 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,142 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,145 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,147 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,149 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,151 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,154 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,156 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,158 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,170 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,173 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,175 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,179 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,181 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,183 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,185 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,188 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,190 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,193 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,196 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,215 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,218 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,220 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,222 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,225 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,227 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,230 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,232 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,234 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,236 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,238 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,240 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,242 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,245 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,247 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,249 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,272 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,277 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,278 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,281 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,283 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,291 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,294 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,296 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,298 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,300 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,302 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,305 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,307 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,309 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,311 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,313 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,315 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,317 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,319 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,327 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,329 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:47:57,331 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,346 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:47:57,349 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,352 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,354 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,357 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,360 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,362 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,393 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,396 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,398 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,400 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:47:57,402 running install_egg_info 2021-07-12T12:47:57,408 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.3.5-py3.9.egg-info 2021-07-12T12:47:57,421 running install_scripts 2021-07-12T12:47:57,463 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T12:47:57,468 creating build/bdist.linux-armv7l/wheel/molmod-1.3.5.dist-info/WHEEL 2021-07-12T12:47:57,471 creating '/tmp/pip-wheel-x9mu1wha/molmod-1.3.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:47:57,475 adding 'molmod/__init__.py' 2021-07-12T12:47:57,477 adding 'molmod/binning.py' 2021-07-12T12:47:57,479 adding 'molmod/bonds.py' 2021-07-12T12:47:57,481 adding 'molmod/clusters.py' 2021-07-12T12:47:57,482 adding 'molmod/common.c' 2021-07-12T12:47:57,483 adding 'molmod/common.h' 2021-07-12T12:47:57,485 adding 'molmod/constants.py' 2021-07-12T12:47:57,710 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:47:57,721 adding 'molmod/ext.pyx' 2021-07-12T12:47:57,722 adding 'molmod/ff.c' 2021-07-12T12:47:57,724 adding 'molmod/ff.h' 2021-07-12T12:47:57,725 adding 'molmod/ff.pxd' 2021-07-12T12:47:57,726 adding 'molmod/graphs.c' 2021-07-12T12:47:57,727 adding 'molmod/graphs.h' 2021-07-12T12:47:57,728 adding 'molmod/graphs.pxd' 2021-07-12T12:47:57,738 adding 'molmod/graphs.py' 2021-07-12T12:47:57,742 adding 'molmod/ic.py' 2021-07-12T12:47:57,743 adding 'molmod/isotopes.py' 2021-07-12T12:47:57,746 adding 'molmod/log.py' 2021-07-12T12:47:57,754 adding 'molmod/minimizer.py' 2021-07-12T12:47:57,758 adding 'molmod/molecular_graphs.py' 2021-07-12T12:47:57,759 adding 'molmod/molecules.c' 2021-07-12T12:47:57,761 adding 'molmod/molecules.h' 2021-07-12T12:47:57,762 adding 'molmod/molecules.pxd' 2021-07-12T12:47:57,764 adding 'molmod/molecules.py' 2021-07-12T12:47:57,766 adding 'molmod/pairff.py' 2021-07-12T12:47:57,767 adding 'molmod/periodic.py' 2021-07-12T12:47:57,769 adding 'molmod/quaternions.py' 2021-07-12T12:47:57,771 adding 'molmod/randomize.py' 2021-07-12T12:47:57,773 adding 'molmod/similarity.c' 2021-07-12T12:47:57,774 adding 'molmod/similarity.h' 2021-07-12T12:47:57,775 adding 'molmod/similarity.pxd' 2021-07-12T12:47:57,777 adding 'molmod/similarity.py' 2021-07-12T12:47:57,778 adding 'molmod/symmetry.py' 2021-07-12T12:47:57,780 adding 'molmod/toyff.py' 2021-07-12T12:47:57,783 adding 'molmod/transformations.py' 2021-07-12T12:47:57,784 adding 'molmod/unit_cells.c' 2021-07-12T12:47:57,786 adding 'molmod/unit_cells.h' 2021-07-12T12:47:57,787 adding 'molmod/unit_cells.pxd' 2021-07-12T12:47:57,789 adding 'molmod/unit_cells.py' 2021-07-12T12:47:57,791 adding 'molmod/units.py' 2021-07-12T12:47:57,793 adding 'molmod/utils.py' 2021-07-12T12:47:57,795 adding 'molmod/vectors.py' 2021-07-12T12:47:57,796 adding 'molmod/version.py' 2021-07-12T12:47:57,798 adding 'molmod/zmatrix.py' 2021-07-12T12:47:57,800 adding 'molmod/data/bonds.csv' 2021-07-12T12:47:57,802 adding 'molmod/data/bonds.ods' 2021-07-12T12:47:57,887 adding 'molmod/data/mass.mas03' 2021-07-12T12:47:57,972 adding 'molmod/data/nubtab03.asc' 2021-07-12T12:47:57,978 adding 'molmod/data/periodic.csv' 2021-07-12T12:47:57,981 adding 'molmod/data/periodic.ods' 2021-07-12T12:47:57,996 adding 'molmod/data/toyff_angles.txt' 2021-07-12T12:47:58,004 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-12T12:47:58,137 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-12T12:47:58,143 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-12T12:47:58,144 adding 'molmod/data/test/5ringOH.xyz' 2021-07-12T12:47:58,145 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-12T12:47:58,389 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-12T12:47:58,398 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-12T12:47:58,399 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-12T12:47:58,400 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-12T12:47:58,402 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-12T12:47:58,403 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-12T12:47:58,404 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-12T12:47:58,406 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-12T12:47:58,407 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-12T12:47:58,408 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-12T12:47:58,410 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-12T12:47:58,411 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-12T12:47:58,415 adding 'molmod/data/test/alanine.cube' 2021-07-12T12:47:58,416 adding 'molmod/data/test/argon.xyz' 2021-07-12T12:47:58,493 adding 'molmod/data/test/bartek.atrj' 2021-07-12T12:47:58,497 adding 'molmod/data/test/benzene.xyz' 2021-07-12T12:47:58,498 adding 'molmod/data/test/butane.xyz' 2021-07-12T12:47:58,499 adding 'molmod/data/test/caplayer.cml' 2021-07-12T12:47:58,566 adding 'molmod/data/test/crystal_api.out' 2021-07-12T12:47:58,570 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-12T12:47:58,571 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-12T12:47:58,572 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-12T12:47:58,574 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-12T12:47:58,578 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-12T12:47:58,580 adding 'molmod/data/test/dopamine.xyz' 2021-07-12T12:47:58,581 adding 'molmod/data/test/ethane.xyz' 2021-07-12T12:47:58,582 adding 'molmod/data/test/ethene.xyz' 2021-07-12T12:47:58,583 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-12T12:47:58,584 adding 'molmod/data/test/example.sdf' 2021-07-12T12:47:58,586 adding 'molmod/data/test/formol.xyz' 2021-07-12T12:47:58,587 adding 'molmod/data/test/funny.xyz' 2021-07-12T12:47:58,588 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-12T12:47:58,618 adding 'molmod/data/test/il2.pdb' 2021-07-12T12:47:58,622 adding 'molmod/data/test/lammps_dump.txt' 2021-07-12T12:47:58,623 adding 'molmod/data/test/lau.xyz' 2021-07-12T12:47:58,624 adding 'molmod/data/test/octane.xyz' 2021-07-12T12:47:58,625 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-12T12:47:58,627 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-12T12:47:58,628 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-12T12:47:58,629 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-12T12:47:58,631 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-12T12:47:58,632 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-12T12:47:58,634 adding 'molmod/data/test/pentapeptide.psf' 2021-07-12T12:47:58,635 adding 'molmod/data/test/precursor.xyz' 2021-07-12T12:47:58,637 adding 'molmod/data/test/probes.xyz' 2021-07-12T12:47:58,638 adding 'molmod/data/test/tea.xyz' 2021-07-12T12:47:58,639 adding 'molmod/data/test/tetra.xyz' 2021-07-12T12:47:58,661 adding 'molmod/data/test/thf.psf' 2021-07-12T12:47:58,669 adding 'molmod/data/test/thf.xyz' 2021-07-12T12:47:58,670 adding 'molmod/data/test/thf_64.cell' 2021-07-12T12:47:58,671 adding 'molmod/data/test/thf_single.xyz' 2021-07-12T12:47:58,672 adding 'molmod/data/test/tpa.xyz' 2021-07-12T12:47:58,673 adding 'molmod/data/test/water.xyz' 2021-07-12T12:47:58,674 adding 'molmod/data/test/water2.gro' 2021-07-12T12:47:58,676 adding 'molmod/data/test/water_md.inp' 2021-07-12T12:47:58,677 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-12T12:47:58,679 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-12T12:47:58,680 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-12T12:47:58,681 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-12T12:47:58,683 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-12T12:47:58,684 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-12T12:47:58,685 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-12T12:47:58,686 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-12T12:47:58,687 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-12T12:47:58,689 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-12T12:47:58,691 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-12T12:47:58,692 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-12T12:47:58,693 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-12T12:47:58,694 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-12T12:47:58,696 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-12T12:47:58,697 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-12T12:47:58,699 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-12T12:47:58,700 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-12T12:47:58,702 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-12T12:47:58,703 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-12T12:47:58,713 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-12T12:47:58,715 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-12T12:47:58,716 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-12T12:47:58,718 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-12T12:47:58,719 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-12T12:47:58,720 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-12T12:47:58,722 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-12T12:47:58,723 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-12T12:47:58,725 adding 'molmod/io/__init__.py' 2021-07-12T12:47:58,727 adding 'molmod/io/atrj.py' 2021-07-12T12:47:58,728 adding 'molmod/io/chk.py' 2021-07-12T12:47:58,730 adding 'molmod/io/cml.py' 2021-07-12T12:47:58,731 adding 'molmod/io/common.py' 2021-07-12T12:47:58,733 adding 'molmod/io/cp2k.py' 2021-07-12T12:47:58,735 adding 'molmod/io/cpmd.py' 2021-07-12T12:47:58,736 adding 'molmod/io/crystal.py' 2021-07-12T12:47:58,738 adding 'molmod/io/cube.py' 2021-07-12T12:47:58,740 adding 'molmod/io/dlpoly.py' 2021-07-12T12:47:58,742 adding 'molmod/io/fchk.py' 2021-07-12T12:47:58,744 adding 'molmod/io/gamess.py' 2021-07-12T12:47:58,745 adding 'molmod/io/gromacs.py' 2021-07-12T12:47:58,747 adding 'molmod/io/lammps.py' 2021-07-12T12:47:58,749 adding 'molmod/io/number_state.py' 2021-07-12T12:47:58,750 adding 'molmod/io/pdb.py' 2021-07-12T12:47:58,753 adding 'molmod/io/psf.py' 2021-07-12T12:47:58,754 adding 'molmod/io/sdf.py' 2021-07-12T12:47:58,756 adding 'molmod/io/xyz.py' 2021-07-12T12:47:58,758 adding 'molmod/io/test/__init__.py' 2021-07-12T12:47:58,759 adding 'molmod/io/test/test_atrj.py' 2021-07-12T12:47:58,760 adding 'molmod/io/test/test_cml.py' 2021-07-12T12:47:58,762 adding 'molmod/io/test/test_cp2k.py' 2021-07-12T12:47:58,763 adding 'molmod/io/test/test_cpmd.py' 2021-07-12T12:47:58,765 adding 'molmod/io/test/test_crystal.py' 2021-07-12T12:47:58,766 adding 'molmod/io/test/test_cube.py' 2021-07-12T12:47:58,767 adding 'molmod/io/test/test_dlpoly.py' 2021-07-12T12:47:58,769 adding 'molmod/io/test/test_fchk.py' 2021-07-12T12:47:58,770 adding 'molmod/io/test/test_gamess.py' 2021-07-12T12:47:58,771 adding 'molmod/io/test/test_gromacs.py' 2021-07-12T12:47:58,772 adding 'molmod/io/test/test_lammps.py' 2021-07-12T12:47:58,774 adding 'molmod/io/test/test_number_state.py' 2021-07-12T12:47:58,775 adding 'molmod/io/test/test_pdb.py' 2021-07-12T12:47:58,776 adding 'molmod/io/test/test_psf.py' 2021-07-12T12:47:58,778 adding 'molmod/io/test/test_sdf.py' 2021-07-12T12:47:58,779 adding 'molmod/io/test/test_xyz.py' 2021-07-12T12:47:58,781 adding 'molmod/test/__init__.py' 2021-07-12T12:47:58,783 adding 'molmod/test/common.py' 2021-07-12T12:47:58,784 adding 'molmod/test/test_binning.py' 2021-07-12T12:47:58,786 adding 'molmod/test/test_clusters.py' 2021-07-12T12:47:58,787 adding 'molmod/test/test_data.py' 2021-07-12T12:47:58,788 adding 'molmod/test/test_examples.py' 2021-07-12T12:47:58,791 adding 'molmod/test/test_graphs.py' 2021-07-12T12:47:58,793 adding 'molmod/test/test_ic.py' 2021-07-12T12:47:58,795 adding 'molmod/test/test_log.py' 2021-07-12T12:47:58,796 adding 'molmod/test/test_minimizer.py' 2021-07-12T12:47:58,799 adding 'molmod/test/test_molecular_graphs.py' 2021-07-12T12:47:58,801 adding 'molmod/test/test_molecules.py' 2021-07-12T12:47:58,803 adding 'molmod/test/test_pairff.py' 2021-07-12T12:47:58,805 adding 'molmod/test/test_quaternions.py' 2021-07-12T12:47:58,807 adding 'molmod/test/test_randomize.py' 2021-07-12T12:47:58,808 adding 'molmod/test/test_similarity.py' 2021-07-12T12:47:58,810 adding 'molmod/test/test_symmetry.py' 2021-07-12T12:47:58,811 adding 'molmod/test/test_toyff.py' 2021-07-12T12:47:58,814 adding 'molmod/test/test_transformations.py' 2021-07-12T12:47:58,816 adding 'molmod/test/test_unit_cells.py' 2021-07-12T12:47:58,817 adding 'molmod/test/test_units.py' 2021-07-12T12:47:58,819 adding 'molmod/test/test_utils.py' 2021-07-12T12:47:58,820 adding 'molmod/test/test_vectors.py' 2021-07-12T12:47:58,821 adding 'molmod/test/test_zmatrix.py' 2021-07-12T12:47:58,829 adding 'molmod-1.3.5.dist-info/LICENSE.txt' 2021-07-12T12:47:58,830 adding 'molmod-1.3.5.dist-info/METADATA' 2021-07-12T12:47:58,831 adding 'molmod-1.3.5.dist-info/WHEEL' 2021-07-12T12:47:58,832 adding 'molmod-1.3.5.dist-info/top_level.txt' 2021-07-12T12:47:58,835 adding 'molmod-1.3.5.dist-info/RECORD' 2021-07-12T12:47:58,863 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:47:59,303 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-12T12:47:59,329 Created wheel for molmod: filename=molmod-1.3.5-cp39-cp39-linux_armv7l.whl size=1953986 sha256=c64f8298ab6a4cb4e41bb0df0c25ff04aaea2e7372ede4d8861624abe42d79ee 2021-07-12T12:47:59,330 Stored in directory: /tmp/pip-ephem-wheel-cache-bfr6wten/wheels/0a/59/cc/6fc4c58cd02e9ed17e657e6e678f76cc434fcd78acbcd4f7e2 2021-07-12T12:47:59,347 Successfully built molmod 2021-07-12T12:47:59,412 Removed build tracker: '/tmp/pip-req-tracker-5at3vcd_'