2021-07-12T12:47:31,901 Created temporary directory: /tmp/pip-ephem-wheel-cache-k0i7jms9 2021-07-12T12:47:31,905 Created temporary directory: /tmp/pip-req-tracker-0xk23d80 2021-07-12T12:47:31,905 Initialized build tracking at /tmp/pip-req-tracker-0xk23d80 2021-07-12T12:47:31,905 Created build tracker: /tmp/pip-req-tracker-0xk23d80 2021-07-12T12:47:31,905 Entered build tracker: /tmp/pip-req-tracker-0xk23d80 2021-07-12T12:47:31,906 Created temporary directory: /tmp/pip-wheel-vyviufjq 2021-07-12T12:47:31,936 1 location(s) to search for versions of yaff: 2021-07-12T12:47:31,936 * https://pypi.org/simple/yaff/ 2021-07-12T12:47:31,936 Fetching project page and analyzing links: https://pypi.org/simple/yaff/ 2021-07-12T12:47:31,937 Getting page https://pypi.org/simple/yaff/ 2021-07-12T12:47:31,938 Found index url https://pypi.org/simple 2021-07-12T12:47:32,029 Found link https://files.pythonhosted.org/packages/c9/f2/047512dde0eb54740406d6a712e96dc03731293ea4cd729be862bf81b6e4/yaff-1.2.0.tar.gz#sha256=634d80f7afecf3003225aa0e06f4c95fcf4a1795d43b7210c0dd01df19b7e3c9 (from https://pypi.org/simple/yaff/), version: 1.2.0 2021-07-12T12:47:32,029 Found link https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz#sha256=536c62b0cc741a176309927dd6a47b6b449268f96e0556767faa624fae9f430f (from https://pypi.org/simple/yaff/), version: 1.3.0 2021-07-12T12:47:32,029 Found link https://files.pythonhosted.org/packages/18/d1/80fd22fb23b0991a9f09a7efc0f163d764205bac1eaed4fa6b322a6f7482/yaff-1.4.0.tar.gz#sha256=502dce64b79be76f240fdd4b9e85a959eeb5733eb2cd4386b4c047f9318434ad (from https://pypi.org/simple/yaff/), version: 1.4.0 2021-07-12T12:47:32,030 Found link https://files.pythonhosted.org/packages/10/fd/8c080b0443c8d200c4dd06378adc1a6877c31c2ecf6f4a41c9be8c73d8a0/yaff-1.4.1.tar.gz#sha256=360be217d2ebdc31b847c6e47f466f3f257990ed3ab3708711848ad128b82afa (from https://pypi.org/simple/yaff/), version: 1.4.1 2021-07-12T12:47:32,030 Found link https://files.pythonhosted.org/packages/3f/21/6269a78287d1b3efce078e0f81566a9e5d2106655a35b83cc2b35eab69e7/yaff-1.4.2.tar.gz#sha256=7bd303f8a2c34d139cbba830b18ebfadb890d8a45f48e160c58dc66c974bba78 (from https://pypi.org/simple/yaff/), version: 1.4.2 2021-07-12T12:47:32,030 Skipping link: not a file: https://pypi.org/simple/yaff/ 2021-07-12T12:47:32,048 Given no hashes to check 1 links for project 'yaff': discarding no candidates 2021-07-12T12:47:32,067 Collecting yaff==1.3.0 2021-07-12T12:47:32,069 Created temporary directory: /tmp/pip-unpack-bgb6dbcf 2021-07-12T12:47:32,478 Downloading yaff-1.3.0.tar.gz (664 kB) 2021-07-12T12:47:33,220 Added yaff==1.3.0 from https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz#sha256=536c62b0cc741a176309927dd6a47b6b449268f96e0556767faa624fae9f430f to build tracker '/tmp/pip-req-tracker-0xk23d80' 2021-07-12T12:47:33,221 Running setup.py (path:/tmp/pip-wheel-vyviufjq/yaff_69de2143af284dffa3caea6a76245362/setup.py) egg_info for package yaff 2021-07-12T12:47:33,222 Created temporary directory: /tmp/pip-pip-egg-info-uxwmduie 2021-07-12T12:47:33,222 Running command python setup.py egg_info 2021-07-12T12:47:34,559 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:47:34,759 running egg_info 2021-07-12T12:47:34,762 creating /tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info 2021-07-12T12:47:34,764 writing /tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/PKG-INFO 2021-07-12T12:47:34,766 writing dependency_links to /tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/dependency_links.txt 2021-07-12T12:47:34,768 writing requirements to /tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/requires.txt 2021-07-12T12:47:34,769 writing top-level names to /tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/top_level.txt 2021-07-12T12:47:34,771 writing manifest file '/tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/SOURCES.txt' 2021-07-12T12:47:34,940 reading manifest file '/tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/SOURCES.txt' 2021-07-12T12:47:34,941 reading manifest template 'MANIFEST.in' 2021-07-12T12:47:34,942 warning: no files found matching 'README' 2021-07-12T12:47:35,356 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2021-07-12T12:47:35,419 adding license file 'LICENSE.txt' 2021-07-12T12:47:35,432 writing manifest file '/tmp/pip-pip-egg-info-uxwmduie/yaff.egg-info/SOURCES.txt' 2021-07-12T12:47:35,550 Source in /tmp/pip-wheel-vyviufjq/yaff_69de2143af284dffa3caea6a76245362 has version 1.3.0, which satisfies requirement yaff==1.3.0 from https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz#sha256=536c62b0cc741a176309927dd6a47b6b449268f96e0556767faa624fae9f430f 2021-07-12T12:47:35,551 Removed yaff==1.3.0 from https://files.pythonhosted.org/packages/e5/55/ad679d745f316943d494e44073836d7788cc34877c5d9498b3fb9150c418/yaff-1.3.0.tar.gz#sha256=536c62b0cc741a176309927dd6a47b6b449268f96e0556767faa624fae9f430f from build tracker '/tmp/pip-req-tracker-0xk23d80' 2021-07-12T12:47:35,555 Created temporary directory: /tmp/pip-unpack-49q3dpy2 2021-07-12T12:47:35,555 Building wheels for collected packages: yaff 2021-07-12T12:47:35,559 Created temporary directory: /tmp/pip-wheel-o02v_8tb 2021-07-12T12:47:35,560 Building wheel for yaff (setup.py): started 2021-07-12T12:47:35,560 Destination directory: /tmp/pip-wheel-o02v_8tb 2021-07-12T12:47:35,560 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vyviufjq/yaff_69de2143af284dffa3caea6a76245362/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vyviufjq/yaff_69de2143af284dffa3caea6a76245362/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-o02v_8tb 2021-07-12T12:47:36,889 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:47:37,112 running bdist_wheel 2021-07-12T12:47:37,117 running build 2021-07-12T12:47:37,117 running build_py 2021-07-12T12:47:37,252 creating build 2021-07-12T12:47:37,252 creating build/lib.linux-armv7l-3.9 2021-07-12T12:47:37,253 creating build/lib.linux-armv7l-3.9/yaff 2021-07-12T12:47:37,254 copying yaff/version.py -> build/lib.linux-armv7l-3.9/yaff 2021-07-12T12:47:37,256 copying yaff/atselect.py -> build/lib.linux-armv7l-3.9/yaff 2021-07-12T12:47:37,258 copying yaff/log.py -> build/lib.linux-armv7l-3.9/yaff 2021-07-12T12:47:37,260 copying yaff/system.py -> build/lib.linux-armv7l-3.9/yaff 2021-07-12T12:47:37,264 copying yaff/__init__.py -> build/lib.linux-armv7l-3.9/yaff 2021-07-12T12:47:37,267 creating build/lib.linux-armv7l-3.9/yaff/test 2021-07-12T12:47:37,267 copying yaff/test/test_atselect.py -> build/lib.linux-armv7l-3.9/yaff/test 2021-07-12T12:47:37,270 copying yaff/test/test_system.py -> build/lib.linux-armv7l-3.9/yaff/test 2021-07-12T12:47:37,273 copying yaff/test/test_examples.py -> build/lib.linux-armv7l-3.9/yaff/test 2021-07-12T12:47:37,274 copying yaff/test/__init__.py -> build/lib.linux-armv7l-3.9/yaff/test 2021-07-12T12:47:37,276 copying yaff/test/common.py -> build/lib.linux-armv7l-3.9/yaff/test 2021-07-12T12:47:37,280 creating build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,281 copying yaff/pes/parameters.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,284 copying yaff/pes/iclist.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,286 copying yaff/pes/nlist.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,289 copying yaff/pes/scaling.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,292 copying yaff/pes/vlist.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,295 copying yaff/pes/ff.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,298 copying yaff/pes/generator.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,301 copying yaff/pes/dlist.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,304 copying yaff/pes/__init__.py -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:37,307 creating build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,308 copying yaff/pes/test/test_scaling.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,310 copying yaff/pes/test/test_generator.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,314 copying yaff/pes/test/test_truncation.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,316 copying yaff/pes/test/test_grid.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,318 copying yaff/pes/test/test_pext.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,320 copying yaff/pes/test/test_nlist.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,322 copying yaff/pes/test/test_iclist.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,325 copying yaff/pes/test/test_cell.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,328 copying yaff/pes/test/test_vlist.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,331 copying yaff/pes/test/test_ewald.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,333 copying yaff/pes/test/test_pair_pot.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,338 copying yaff/pes/test/test_topology.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,340 copying yaff/pes/test/test_md.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,342 copying yaff/pes/test/test_parameters.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,344 copying yaff/pes/test/__init__.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,346 copying yaff/pes/test/common.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,348 copying yaff/pes/test/test_dlist.py -> build/lib.linux-armv7l-3.9/yaff/pes/test 2021-07-12T12:47:37,351 creating build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,352 copying yaff/sampling/npt.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,356 copying yaff/sampling/opt.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,358 copying yaff/sampling/nvt.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,361 copying yaff/sampling/utils.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,363 copying yaff/sampling/harmonic.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,365 copying yaff/sampling/dof.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,368 copying yaff/sampling/trajectory.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,370 copying yaff/sampling/verlet.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,373 copying yaff/sampling/io.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,375 copying yaff/sampling/iterative.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,378 copying yaff/sampling/__init__.py -> build/lib.linux-armv7l-3.9/yaff/sampling 2021-07-12T12:47:37,381 creating build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,381 copying yaff/sampling/test/test_nvt.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,383 copying yaff/sampling/test/test_dof.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,385 copying yaff/sampling/test/test_verlet.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,387 copying yaff/sampling/test/test_npt.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,389 copying yaff/sampling/test/test_harmonic.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,392 copying yaff/sampling/test/test_utils.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,393 copying yaff/sampling/test/test_opt.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,396 copying yaff/sampling/test/__init__.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,397 copying yaff/sampling/test/common.py -> build/lib.linux-armv7l-3.9/yaff/sampling/test 2021-07-12T12:47:37,400 creating build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,401 copying yaff/analysis/diffusion.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,404 copying yaff/analysis/blav.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,406 copying yaff/analysis/rdf.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,408 copying yaff/analysis/utils.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,411 copying yaff/analysis/basic.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,414 copying yaff/analysis/hook.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,417 copying yaff/analysis/pca.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,419 copying yaff/analysis/__init__.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,421 copying yaff/analysis/spectrum.py -> build/lib.linux-armv7l-3.9/yaff/analysis 2021-07-12T12:47:37,424 creating build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,425 copying yaff/analysis/test/test_basic.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,427 copying yaff/analysis/test/test_blav.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,429 copying yaff/analysis/test/test_spectrum.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,431 copying yaff/analysis/test/test_rdf.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,433 copying yaff/analysis/test/test_diffusion.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,435 copying yaff/analysis/test/__init__.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,437 copying yaff/analysis/test/common.py -> build/lib.linux-armv7l-3.9/yaff/analysis/test 2021-07-12T12:47:37,439 creating build/lib.linux-armv7l-3.9/yaff/tune 2021-07-12T12:47:37,440 copying yaff/tune/transform.py -> build/lib.linux-armv7l-3.9/yaff/tune 2021-07-12T12:47:37,442 copying yaff/tune/cost.py -> build/lib.linux-armv7l-3.9/yaff/tune 2021-07-12T12:47:37,445 copying yaff/tune/__init__.py -> build/lib.linux-armv7l-3.9/yaff/tune 2021-07-12T12:47:37,447 creating build/lib.linux-armv7l-3.9/yaff/tune/test 2021-07-12T12:47:37,448 copying yaff/tune/test/test_transform.py -> build/lib.linux-armv7l-3.9/yaff/tune/test 2021-07-12T12:47:37,450 copying yaff/tune/test/test_cost.py -> build/lib.linux-armv7l-3.9/yaff/tune/test 2021-07-12T12:47:37,452 copying yaff/tune/test/__init__.py -> build/lib.linux-armv7l-3.9/yaff/tune/test 2021-07-12T12:47:37,454 creating build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,455 copying yaff/conversion/xyz.py -> build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,457 copying yaff/conversion/gaussian.py -> build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,459 copying yaff/conversion/dlpoly.py -> build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,461 copying yaff/conversion/cp2k.py -> build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,463 copying yaff/conversion/__init__.py -> build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,465 copying yaff/conversion/common.py -> build/lib.linux-armv7l-3.9/yaff/conversion 2021-07-12T12:47:37,468 creating build/lib.linux-armv7l-3.9/yaff/conversion/test 2021-07-12T12:47:37,468 copying yaff/conversion/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/yaff/conversion/test 2021-07-12T12:47:37,470 copying yaff/conversion/test/test_gaussian.py -> build/lib.linux-armv7l-3.9/yaff/conversion/test 2021-07-12T12:47:37,473 copying yaff/conversion/test/test_xyz.py -> build/lib.linux-armv7l-3.9/yaff/conversion/test 2021-07-12T12:47:37,475 copying yaff/conversion/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/yaff/conversion/test 2021-07-12T12:47:37,477 copying yaff/conversion/test/__init__.py -> build/lib.linux-armv7l-3.9/yaff/conversion/test 2021-07-12T12:47:37,478 running egg_info 2021-07-12T12:47:37,493 writing yaff.egg-info/PKG-INFO 2021-07-12T12:47:37,495 writing dependency_links to yaff.egg-info/dependency_links.txt 2021-07-12T12:47:37,496 writing requirements to yaff.egg-info/requires.txt 2021-07-12T12:47:37,498 writing top-level names to yaff.egg-info/top_level.txt 2021-07-12T12:47:37,513 reading manifest file 'yaff.egg-info/SOURCES.txt' 2021-07-12T12:47:37,520 reading manifest template 'MANIFEST.in' 2021-07-12T12:47:37,521 warning: no files found matching 'README' 2021-07-12T12:47:37,952 warning: no previously-included files matching 'ext.c' found under directory 'yaff' 2021-07-12T12:47:37,998 adding license file 'LICENSE.txt' 2021-07-12T12:47:38,015 writing manifest file 'yaff.egg-info/SOURCES.txt' 2021-07-12T12:47:38,032 creating build/lib.linux-armv7l-3.9/yaff/data 2021-07-12T12:47:38,032 creating build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,033 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,036 copying yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,040 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,043 copying yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,046 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,049 copying yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,053 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,056 copying yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,060 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,064 copying yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,068 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,071 copying yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,076 copying yaff/data/opttest/alpha_quartz.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,078 copying yaff/data/opttest/alpha_quartz_distorted.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,081 copying yaff/data/opttest/cases.txt -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,084 copying yaff/data/opttest/merlonite_debug.pot -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,087 copying yaff/data/opttest/merlonite_fragment.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,090 copying yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,093 copying yaff/data/opttest/water_dimer.chk -> build/lib.linux-armv7l-3.9/yaff/data/opttest 2021-07-12T12:47:38,096 creating build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,097 copying yaff/data/test/chloro_pos.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,106 copying yaff/data/test/chloro_vol.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,109 copying yaff/data/test/cp2k-1.ener -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,111 copying yaff/data/test/dlpoly_HISTORY_an1 -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,113 copying yaff/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,116 copying yaff/data/test/dlpoly_HISTORY_sam -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,119 copying yaff/data/test/dlpoly_HISTORY_uo -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,121 copying yaff/data/test/gaussian_sioh4_md.log -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,126 copying yaff/data/test/gaussian_sioh4_md.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,128 copying yaff/data/test/guaianolide.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,130 copying yaff/data/test/guaianolide_framework_ordered.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,133 copying yaff/data/test/nobornane.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,135 copying yaff/data/test/parameters_alkane.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,137 copying yaff/data/test/parameters_bks.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,140 copying yaff/data/test/parameters_fake_d3bj.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,142 copying yaff/data/test/parameters_fake_dampdisp1.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,144 copying yaff/data/test/parameters_fake_exprep1.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,147 copying yaff/data/test/parameters_fake_lj.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,149 copying yaff/data/test/parameters_fake_mm3.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,151 copying yaff/data/test/parameters_fake_qmdffrep.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,153 copying yaff/data/test/parameters_fake_torsion1.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,155 copying yaff/data/test/parameters_fake_torsion2.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,158 copying yaff/data/test/parameters_formaldehyde_inversion.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,160 copying yaff/data/test/parameters_glycine_fixq.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,162 copying yaff/data/test/parameters_glycine_torsion.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,164 copying yaff/data/test/parameters_nacl.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,167 copying yaff/data/test/parameters_polyene.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,169 copying yaff/data/test/parameters_water.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,171 copying yaff/data/test/parameters_water_bendaharm.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,174 copying yaff/data/test/parameters_water_bendcharm.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,176 copying yaff/data/test/parameters_water_bondcross.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,178 copying yaff/data/test/parameters_water_bondfues.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,180 copying yaff/data/test/parameters_water_bondharm.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,182 copying yaff/data/test/parameters_water_cross.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,185 copying yaff/data/test/parameters_water_dampdisp1.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,187 copying yaff/data/test/parameters_water_dampdisp2.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,189 copying yaff/data/test/parameters_water_exprep1.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,191 copying yaff/data/test/parameters_water_exprep2.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,193 copying yaff/data/test/parameters_water_exprep3.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,195 copying yaff/data/test/parameters_water_fixq.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,198 copying yaff/data/test/parameters_water_fixq_dielectric.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,200 copying yaff/data/test/parameters_water_lj.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,202 copying yaff/data/test/parameters_water_mm3.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,204 copying yaff/data/test/parameters_water_ubharm.txt -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,207 copying yaff/data/test/rhodium_complex_nobornane.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,209 copying yaff/data/test/water_hessian.chk -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,212 copying yaff/data/test/water_trajectory.xyz -> build/lib.linux-armv7l-3.9/yaff/data/test 2021-07-12T12:47:38,214 creating build/lib.linux-armv7l-3.9/yaff/examples 2021-07-12T12:47:38,215 copying yaff/examples/.gitignore -> build/lib.linux-armv7l-3.9/yaff/examples 2021-07-12T12:47:38,217 creating build/lib.linux-armv7l-3.9/yaff/examples/000_overview 2021-07-12T12:47:38,218 copying yaff/examples/000_overview/parameters.txt -> build/lib.linux-armv7l-3.9/yaff/examples/000_overview 2021-07-12T12:47:38,221 copying yaff/examples/000_overview/simulation.py -> build/lib.linux-armv7l-3.9/yaff/examples/000_overview 2021-07-12T12:47:38,223 copying yaff/examples/000_overview/system.chk -> build/lib.linux-armv7l-3.9/yaff/examples/000_overview 2021-07-12T12:47:38,226 creating build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks 2021-07-12T12:47:38,227 copying yaff/examples/001_tutorial_bks/all.sh -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks 2021-07-12T12:47:38,230 copying yaff/examples/001_tutorial_bks/bks.pot -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks 2021-07-12T12:47:38,232 creating build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init 2021-07-12T12:47:38,233 copying yaff/examples/001_tutorial_bks/init/mksystem.py -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init 2021-07-12T12:47:38,235 copying yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init 2021-07-12T12:47:38,237 copying yaff/examples/001_tutorial_bks/init/struct.xyz -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init 2021-07-12T12:47:38,240 creating build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/nvt 2021-07-12T12:47:38,240 copying yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/nvt 2021-07-12T12:47:38,243 copying yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/nvt 2021-07-12T12:47:38,245 creating build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/opt 2021-07-12T12:47:38,246 copying yaff/examples/001_tutorial_bks/opt/analysis.py -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/opt 2021-07-12T12:47:38,249 copying yaff/examples/001_tutorial_bks/opt/simulation.py -> build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/opt 2021-07-12T12:47:38,251 creating build/lib.linux-armv7l-3.9/yaff/examples/002_external_trajectory 2021-07-12T12:47:38,252 copying yaff/examples/002_external_trajectory/rdf.py -> build/lib.linux-armv7l-3.9/yaff/examples/002_external_trajectory 2021-07-12T12:47:38,255 copying yaff/examples/002_external_trajectory/trajectory.xyz -> build/lib.linux-armv7l-3.9/yaff/examples/002_external_trajectory 2021-07-12T12:47:38,258 creating build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat 2021-07-12T12:47:38,258 copying yaff/examples/003_water_thermostat/md.py -> build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat 2021-07-12T12:47:38,261 copying yaff/examples/003_water_thermostat/parameters.txt -> build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat 2021-07-12T12:47:38,263 copying yaff/examples/003_water_thermostat/system.chk -> build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat 2021-07-12T12:47:38,265 creating build/lib.linux-armv7l-3.9/yaff/examples/999_back_propagation 2021-07-12T12:47:38,266 copying yaff/examples/999_back_propagation/bp.py -> build/lib.linux-armv7l-3.9/yaff/examples/999_back_propagation 2021-07-12T12:47:38,269 copying yaff/pes/cell.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,272 copying yaff/pes/cell.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,274 copying yaff/pes/cell.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,276 copying yaff/pes/constants.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,278 copying yaff/pes/dlist.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,281 copying yaff/pes/dlist.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,283 copying yaff/pes/dlist.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,285 copying yaff/pes/ewald.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,288 copying yaff/pes/ewald.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,290 copying yaff/pes/ewald.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,292 copying yaff/pes/ext.pyx -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,297 copying yaff/pes/grid.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,300 copying yaff/pes/grid.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,302 copying yaff/pes/grid.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,304 copying yaff/pes/iclist.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,307 copying yaff/pes/iclist.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,310 copying yaff/pes/iclist.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,312 copying yaff/pes/nlist.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,314 copying yaff/pes/nlist.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,317 copying yaff/pes/nlist.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,319 copying yaff/pes/pair_pot.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,322 copying yaff/pes/pair_pot.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,325 copying yaff/pes/pair_pot.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,328 copying yaff/pes/slater.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,330 copying yaff/pes/slater.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,333 copying yaff/pes/slater.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,335 copying yaff/pes/truncation.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,337 copying yaff/pes/truncation.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,339 copying yaff/pes/truncation.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,341 copying yaff/pes/vlist.c -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,344 copying yaff/pes/vlist.h -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,346 copying yaff/pes/vlist.pxd -> build/lib.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:38,359 running build_ext 2021-07-12T12:47:38,363 cythoning yaff/pes/ext.pyx to yaff/pes/ext.c 2021-07-12T12:47:38,984 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vyviufjq/yaff_69de2143af284dffa3caea6a76245362/yaff/pes/ext.pyx 2021-07-12T12:47:38,985 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:47:45,035 building 'yaff.pes.ext' extension 2021-07-12T12:47:45,036 creating build/temp.linux-armv7l-3.9 2021-07-12T12:47:45,036 creating build/temp.linux-armv7l-3.9/yaff 2021-07-12T12:47:45,036 creating build/temp.linux-armv7l-3.9/yaff/pes 2021-07-12T12:47:45,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/cell.c -o build/temp.linux-armv7l-3.9/yaff/pes/cell.o 2021-07-12T12:47:45,618 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/dlist.c -o build/temp.linux-armv7l-3.9/yaff/pes/dlist.o 2021-07-12T12:47:45,814 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/ewald.c -o build/temp.linux-armv7l-3.9/yaff/pes/ewald.o 2021-07-12T12:47:46,661 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/ext.c -o build/temp.linux-armv7l-3.9/yaff/pes/ext.o 2021-07-12T12:47:47,078 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:47:47,078 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:47:47,078 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:47:47,079 from yaff/pes/ext.c:612: 2021-07-12T12:47:47,079 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:47:47,079 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:47:47,079 | ^~~~~~~ 2021-07-12T12:48:44,169 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/grid.c -o build/temp.linux-armv7l-3.9/yaff/pes/grid.o 2021-07-12T12:48:44,233 yaff/pes/grid.c: In function ‘compute_grid3d’: 2021-07-12T12:48:44,233 yaff/pes/grid.c:46:20: warning: implicit declaration of function ‘floor’ [-Wimplicit-function-declaration] 2021-07-12T12:48:44,233 46 | frac[i] -= floor(frac[i]); 2021-07-12T12:48:44,234 | ^~~~~ 2021-07-12T12:48:44,234 yaff/pes/grid.c:46:20: warning: incompatible implicit declaration of built-in function ‘floor’ 2021-07-12T12:48:44,234 yaff/pes/grid.c:32:1: note: include ‘’ or provide a declaration of ‘floor’ 2021-07-12T12:48:44,234 31 | #include "grid.h" 2021-07-12T12:48:44,234 +++ |+#include 2021-07-12T12:48:44,234 32 | 2021-07-12T12:48:44,235 yaff/pes/grid.c:35:36: warning: unused variable ‘e22’ [-Wunused-variable] 2021-07-12T12:48:44,235 35 | double frac[3], e11, e12, e21, e22; 2021-07-12T12:48:44,236 | ^~~ 2021-07-12T12:48:44,236 yaff/pes/grid.c:35:31: warning: unused variable ‘e21’ [-Wunused-variable] 2021-07-12T12:48:44,236 35 | double frac[3], e11, e12, e21, e22; 2021-07-12T12:48:44,236 | ^~~ 2021-07-12T12:48:44,236 yaff/pes/grid.c:35:26: warning: unused variable ‘e12’ [-Wunused-variable] 2021-07-12T12:48:44,236 35 | double frac[3], e11, e12, e21, e22; 2021-07-12T12:48:44,237 | ^~~ 2021-07-12T12:48:44,237 yaff/pes/grid.c:35:21: warning: unused variable ‘e11’ [-Wunused-variable] 2021-07-12T12:48:44,237 35 | double frac[3], e11, e12, e21, e22; 2021-07-12T12:48:44,237 | ^~~ 2021-07-12T12:48:44,324 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/iclist.c -o build/temp.linux-armv7l-3.9/yaff/pes/iclist.o 2021-07-12T12:48:45,181 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/nlist.c -o build/temp.linux-armv7l-3.9/yaff/pes/nlist.o 2021-07-12T12:48:45,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/pair_pot.c -o build/temp.linux-armv7l-3.9/yaff/pes/pair_pot.o 2021-07-12T12:48:46,602 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/slater.c -o build/temp.linux-armv7l-3.9/yaff/pes/slater.o 2021-07-12T12:48:47,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/truncation.c -o build/temp.linux-armv7l-3.9/yaff/pes/truncation.o 2021-07-12T12:48:47,575 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c yaff/pes/vlist.c -o build/temp.linux-armv7l-3.9/yaff/pes/vlist.o 2021-07-12T12:48:48,151 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/yaff/pes/cell.o build/temp.linux-armv7l-3.9/yaff/pes/dlist.o build/temp.linux-armv7l-3.9/yaff/pes/ewald.o build/temp.linux-armv7l-3.9/yaff/pes/ext.o build/temp.linux-armv7l-3.9/yaff/pes/grid.o build/temp.linux-armv7l-3.9/yaff/pes/iclist.o build/temp.linux-armv7l-3.9/yaff/pes/nlist.o build/temp.linux-armv7l-3.9/yaff/pes/pair_pot.o build/temp.linux-armv7l-3.9/yaff/pes/slater.o build/temp.linux-armv7l-3.9/yaff/pes/truncation.o build/temp.linux-armv7l-3.9/yaff/pes/vlist.o -o build/lib.linux-armv7l-3.9/yaff/pes/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:48:48,494 running build_scripts 2021-07-12T12:48:48,495 creating build/scripts-3.9 2021-07-12T12:48:48,496 copying and adjusting scripts/yaff-opttest -> build/scripts-3.9 2021-07-12T12:48:48,498 changing mode of build/scripts-3.9/yaff-opttest from 644 to 755 2021-07-12T12:48:48,507 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:48:48,507 running install 2021-07-12T12:48:48,508 running install_lib 2021-07-12T12:48:48,512 creating build/bdist.linux-armv7l 2021-07-12T12:48:48,513 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:48:48,515 creating build/bdist.linux-armv7l/wheel/yaff 2021-07-12T12:48:48,515 copying build/lib.linux-armv7l-3.9/yaff/version.py -> build/bdist.linux-armv7l/wheel/yaff 2021-07-12T12:48:48,518 creating build/bdist.linux-armv7l/wheel/yaff/test 2021-07-12T12:48:48,519 copying build/lib.linux-armv7l-3.9/yaff/test/test_atselect.py -> build/bdist.linux-armv7l/wheel/yaff/test 2021-07-12T12:48:48,522 copying build/lib.linux-armv7l-3.9/yaff/test/test_system.py -> build/bdist.linux-armv7l/wheel/yaff/test 2021-07-12T12:48:48,524 copying build/lib.linux-armv7l-3.9/yaff/test/test_examples.py -> build/bdist.linux-armv7l/wheel/yaff/test 2021-07-12T12:48:48,526 copying build/lib.linux-armv7l-3.9/yaff/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/test 2021-07-12T12:48:48,528 copying build/lib.linux-armv7l-3.9/yaff/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/test 2021-07-12T12:48:48,532 creating build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,532 copying build/lib.linux-armv7l-3.9/yaff/analysis/diffusion.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,535 copying build/lib.linux-armv7l-3.9/yaff/analysis/blav.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,537 copying build/lib.linux-armv7l-3.9/yaff/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,539 copying build/lib.linux-armv7l-3.9/yaff/analysis/utils.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,541 copying build/lib.linux-armv7l-3.9/yaff/analysis/basic.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,545 creating build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,546 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/test_basic.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,548 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/test_blav.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,550 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/test_spectrum.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,552 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/test_rdf.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,555 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/test_diffusion.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,557 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,558 copying build/lib.linux-armv7l-3.9/yaff/analysis/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/analysis/test 2021-07-12T12:48:48,560 copying build/lib.linux-armv7l-3.9/yaff/analysis/hook.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,563 copying build/lib.linux-armv7l-3.9/yaff/analysis/pca.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,566 copying build/lib.linux-armv7l-3.9/yaff/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,568 copying build/lib.linux-armv7l-3.9/yaff/analysis/spectrum.py -> build/bdist.linux-armv7l/wheel/yaff/analysis 2021-07-12T12:48:48,570 copying build/lib.linux-armv7l-3.9/yaff/atselect.py -> build/bdist.linux-armv7l/wheel/yaff 2021-07-12T12:48:48,574 creating build/bdist.linux-armv7l/wheel/yaff/tune 2021-07-12T12:48:48,575 copying build/lib.linux-armv7l-3.9/yaff/tune/transform.py -> build/bdist.linux-armv7l/wheel/yaff/tune 2021-07-12T12:48:48,577 creating build/bdist.linux-armv7l/wheel/yaff/tune/test 2021-07-12T12:48:48,578 copying build/lib.linux-armv7l-3.9/yaff/tune/test/test_transform.py -> build/bdist.linux-armv7l/wheel/yaff/tune/test 2021-07-12T12:48:48,581 copying build/lib.linux-armv7l-3.9/yaff/tune/test/test_cost.py -> build/bdist.linux-armv7l/wheel/yaff/tune/test 2021-07-12T12:48:48,583 copying build/lib.linux-armv7l-3.9/yaff/tune/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/tune/test 2021-07-12T12:48:48,585 copying build/lib.linux-armv7l-3.9/yaff/tune/cost.py -> build/bdist.linux-armv7l/wheel/yaff/tune 2021-07-12T12:48:48,588 copying build/lib.linux-armv7l-3.9/yaff/tune/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/tune 2021-07-12T12:48:48,590 creating build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,591 copying build/lib.linux-armv7l-3.9/yaff/sampling/npt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,595 copying build/lib.linux-armv7l-3.9/yaff/sampling/opt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,598 copying build/lib.linux-armv7l-3.9/yaff/sampling/nvt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,601 copying build/lib.linux-armv7l-3.9/yaff/sampling/utils.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,603 copying build/lib.linux-armv7l-3.9/yaff/sampling/harmonic.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,606 copying build/lib.linux-armv7l-3.9/yaff/sampling/dof.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,610 creating build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,610 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_nvt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,613 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_dof.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,615 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_verlet.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,617 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_npt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,619 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_harmonic.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,621 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_utils.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,623 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/test_opt.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,626 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,627 copying build/lib.linux-armv7l-3.9/yaff/sampling/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/sampling/test 2021-07-12T12:48:48,629 copying build/lib.linux-armv7l-3.9/yaff/sampling/trajectory.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,631 copying build/lib.linux-armv7l-3.9/yaff/sampling/verlet.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,634 copying build/lib.linux-armv7l-3.9/yaff/sampling/io.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,637 copying build/lib.linux-armv7l-3.9/yaff/sampling/iterative.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,639 copying build/lib.linux-armv7l-3.9/yaff/sampling/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/sampling 2021-07-12T12:48:48,642 creating build/bdist.linux-armv7l/wheel/yaff/data 2021-07-12T12:48:48,644 creating build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,645 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,647 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/alpha_quartz_distorted.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,649 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,652 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/water_dimer.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,654 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/alpha_quartz.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,656 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/merlonite_fragment_overbonded.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,659 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,662 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,664 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/merlonite_fragment.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,667 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,669 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/merlonite_debug.pot -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,672 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,678 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,681 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,684 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/cases.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,686 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,689 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,692 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,694 copying build/lib.linux-armv7l-3.9/yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk -> build/bdist.linux-armv7l/wheel/yaff/data/opttest 2021-07-12T12:48:48,700 creating build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,701 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_exprep3.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,703 copying build/lib.linux-armv7l-3.9/yaff/data/test/chloro_vol.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,705 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_alkane.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,707 copying build/lib.linux-armv7l-3.9/yaff/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,709 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_formaldehyde_inversion.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,712 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_glycine_torsion.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,714 copying build/lib.linux-armv7l-3.9/yaff/data/test/nobornane.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,716 copying build/lib.linux-armv7l-3.9/yaff/data/test/rhodium_complex_nobornane.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,718 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_dampdisp1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,720 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_qmdffrep.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,722 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_bendaharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,724 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_polyene.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,726 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_glycine_fixq.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,728 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_torsion1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,729 copying build/lib.linux-armv7l-3.9/yaff/data/test/guaianolide_framework_ordered.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,731 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_mm3.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,733 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_dampdisp1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,735 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_dampdisp2.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,737 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_exprep2.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,739 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_bondcross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,740 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_torsion2.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,742 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_bendcharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,744 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_exprep1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,746 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_lj.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,748 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_bks.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,750 copying build/lib.linux-armv7l-3.9/yaff/data/test/guaianolide.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,752 copying build/lib.linux-armv7l-3.9/yaff/data/test/water_hessian.chk -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,754 copying build/lib.linux-armv7l-3.9/yaff/data/test/water_trajectory.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,756 copying build/lib.linux-armv7l-3.9/yaff/data/test/cp2k-1.ener -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,758 copying build/lib.linux-armv7l-3.9/yaff/data/test/chloro_pos.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,768 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_bondharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,770 copying build/lib.linux-armv7l-3.9/yaff/data/test/gaussian_sioh4_md.xyz -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,772 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,774 copying build/lib.linux-armv7l-3.9/yaff/data/test/dlpoly_HISTORY_an1 -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,776 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_fake_d3bj.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,778 copying build/lib.linux-armv7l-3.9/yaff/data/test/dlpoly_HISTORY_sam -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,780 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_fixq.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,782 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_lj.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,783 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_cross.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,785 copying build/lib.linux-armv7l-3.9/yaff/data/test/gaussian_sioh4_md.log -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,789 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_bondfues.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,791 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_exprep1.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,793 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_fixq_dielectric.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,795 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_ubharm.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,797 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_nacl.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,798 copying build/lib.linux-armv7l-3.9/yaff/data/test/dlpoly_HISTORY_uo -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,800 copying build/lib.linux-armv7l-3.9/yaff/data/test/parameters_water_mm3.txt -> build/bdist.linux-armv7l/wheel/yaff/data/test 2021-07-12T12:48:48,803 creating build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,804 copying build/lib.linux-armv7l-3.9/yaff/pes/constants.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,806 copying build/lib.linux-armv7l-3.9/yaff/pes/parameters.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,808 copying build/lib.linux-armv7l-3.9/yaff/pes/nlist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,811 copying build/lib.linux-armv7l-3.9/yaff/pes/truncation.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,813 copying build/lib.linux-armv7l-3.9/yaff/pes/iclist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,814 copying build/lib.linux-armv7l-3.9/yaff/pes/nlist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,816 copying build/lib.linux-armv7l-3.9/yaff/pes/ext.pyx -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,823 copying build/lib.linux-armv7l-3.9/yaff/pes/truncation.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,825 copying build/lib.linux-armv7l-3.9/yaff/pes/slater.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,827 copying build/lib.linux-armv7l-3.9/yaff/pes/cell.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,830 copying build/lib.linux-armv7l-3.9/yaff/pes/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,913 copying build/lib.linux-armv7l-3.9/yaff/pes/iclist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,916 copying build/lib.linux-armv7l-3.9/yaff/pes/nlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,918 copying build/lib.linux-armv7l-3.9/yaff/pes/grid.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,920 copying build/lib.linux-armv7l-3.9/yaff/pes/slater.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,922 copying build/lib.linux-armv7l-3.9/yaff/pes/scaling.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,925 copying build/lib.linux-armv7l-3.9/yaff/pes/vlist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,927 copying build/lib.linux-armv7l-3.9/yaff/pes/dlist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,929 copying build/lib.linux-armv7l-3.9/yaff/pes/pair_pot.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,932 copying build/lib.linux-armv7l-3.9/yaff/pes/vlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,935 copying build/lib.linux-armv7l-3.9/yaff/pes/ff.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,938 copying build/lib.linux-armv7l-3.9/yaff/pes/vlist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,942 copying build/lib.linux-armv7l-3.9/yaff/pes/grid.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,943 copying build/lib.linux-armv7l-3.9/yaff/pes/slater.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,946 creating build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,946 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_scaling.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,948 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_generator.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,952 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_truncation.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,953 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_grid.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,955 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_pext.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,957 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_nlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,959 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_iclist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,962 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_cell.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,965 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_vlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,968 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_ewald.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,970 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_pair_pot.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,974 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_topology.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,976 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_md.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,978 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_parameters.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,980 copying build/lib.linux-armv7l-3.9/yaff/pes/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,982 copying build/lib.linux-armv7l-3.9/yaff/pes/test/common.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,984 copying build/lib.linux-armv7l-3.9/yaff/pes/test/test_dlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes/test 2021-07-12T12:48:48,986 copying build/lib.linux-armv7l-3.9/yaff/pes/iclist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,988 copying build/lib.linux-armv7l-3.9/yaff/pes/ewald.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,990 copying build/lib.linux-armv7l-3.9/yaff/pes/ewald.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,993 copying build/lib.linux-armv7l-3.9/yaff/pes/pair_pot.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,996 copying build/lib.linux-armv7l-3.9/yaff/pes/cell.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:48,998 copying build/lib.linux-armv7l-3.9/yaff/pes/generator.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,002 copying build/lib.linux-armv7l-3.9/yaff/pes/pair_pot.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,005 copying build/lib.linux-armv7l-3.9/yaff/pes/dlist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,007 copying build/lib.linux-armv7l-3.9/yaff/pes/nlist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,009 copying build/lib.linux-armv7l-3.9/yaff/pes/dlist.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,011 copying build/lib.linux-armv7l-3.9/yaff/pes/grid.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,013 copying build/lib.linux-armv7l-3.9/yaff/pes/iclist.c -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,016 copying build/lib.linux-armv7l-3.9/yaff/pes/cell.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,019 copying build/lib.linux-armv7l-3.9/yaff/pes/ewald.pxd -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,021 copying build/lib.linux-armv7l-3.9/yaff/pes/dlist.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,023 copying build/lib.linux-armv7l-3.9/yaff/pes/truncation.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,026 copying build/lib.linux-armv7l-3.9/yaff/pes/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,028 copying build/lib.linux-armv7l-3.9/yaff/pes/vlist.h -> build/bdist.linux-armv7l/wheel/yaff/pes 2021-07-12T12:48:49,031 creating build/bdist.linux-armv7l/wheel/yaff/examples 2021-07-12T12:48:49,032 copying build/lib.linux-armv7l-3.9/yaff/examples/.gitignore -> build/bdist.linux-armv7l/wheel/yaff/examples 2021-07-12T12:48:49,035 creating build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2021-07-12T12:48:49,036 copying build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat/parameters.txt -> build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2021-07-12T12:48:49,039 copying build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat/system.chk -> build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2021-07-12T12:48:49,041 copying build/lib.linux-armv7l-3.9/yaff/examples/003_water_thermostat/md.py -> build/bdist.linux-armv7l/wheel/yaff/examples/003_water_thermostat 2021-07-12T12:48:49,044 creating build/bdist.linux-armv7l/wheel/yaff/examples/999_back_propagation 2021-07-12T12:48:49,045 copying build/lib.linux-armv7l-3.9/yaff/examples/999_back_propagation/bp.py -> build/bdist.linux-armv7l/wheel/yaff/examples/999_back_propagation 2021-07-12T12:48:49,048 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks 2021-07-12T12:48:49,050 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2021-07-12T12:48:49,051 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init/mksystem.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2021-07-12T12:48:49,053 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init/rvecs.txt -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2021-07-12T12:48:49,055 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/init/struct.xyz -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/init 2021-07-12T12:48:49,058 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/nvt 2021-07-12T12:48:49,059 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/nvt/simulation.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/nvt 2021-07-12T12:48:49,061 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/nvt/analysis.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/nvt 2021-07-12T12:48:49,064 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/bks.pot -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks 2021-07-12T12:48:49,067 creating build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/opt 2021-07-12T12:48:49,068 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/opt/simulation.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/opt 2021-07-12T12:48:49,071 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/opt/analysis.py -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks/opt 2021-07-12T12:48:49,073 copying build/lib.linux-armv7l-3.9/yaff/examples/001_tutorial_bks/all.sh -> build/bdist.linux-armv7l/wheel/yaff/examples/001_tutorial_bks 2021-07-12T12:48:49,076 creating build/bdist.linux-armv7l/wheel/yaff/examples/002_external_trajectory 2021-07-12T12:48:49,077 copying build/lib.linux-armv7l-3.9/yaff/examples/002_external_trajectory/trajectory.xyz -> build/bdist.linux-armv7l/wheel/yaff/examples/002_external_trajectory 2021-07-12T12:48:49,080 copying build/lib.linux-armv7l-3.9/yaff/examples/002_external_trajectory/rdf.py -> build/bdist.linux-armv7l/wheel/yaff/examples/002_external_trajectory 2021-07-12T12:48:49,083 creating build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2021-07-12T12:48:49,084 copying build/lib.linux-armv7l-3.9/yaff/examples/000_overview/simulation.py -> build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2021-07-12T12:48:49,086 copying build/lib.linux-armv7l-3.9/yaff/examples/000_overview/parameters.txt -> build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2021-07-12T12:48:49,089 copying build/lib.linux-armv7l-3.9/yaff/examples/000_overview/system.chk -> build/bdist.linux-armv7l/wheel/yaff/examples/000_overview 2021-07-12T12:48:49,092 copying build/lib.linux-armv7l-3.9/yaff/log.py -> build/bdist.linux-armv7l/wheel/yaff 2021-07-12T12:48:49,094 creating build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,095 copying build/lib.linux-armv7l-3.9/yaff/conversion/xyz.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,098 copying build/lib.linux-armv7l-3.9/yaff/conversion/gaussian.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,101 creating build/bdist.linux-armv7l/wheel/yaff/conversion/test 2021-07-12T12:48:49,102 copying build/lib.linux-armv7l-3.9/yaff/conversion/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2021-07-12T12:48:49,105 copying build/lib.linux-armv7l-3.9/yaff/conversion/test/test_gaussian.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2021-07-12T12:48:49,107 copying build/lib.linux-armv7l-3.9/yaff/conversion/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2021-07-12T12:48:49,109 copying build/lib.linux-armv7l-3.9/yaff/conversion/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2021-07-12T12:48:49,112 copying build/lib.linux-armv7l-3.9/yaff/conversion/test/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/conversion/test 2021-07-12T12:48:49,114 copying build/lib.linux-armv7l-3.9/yaff/conversion/dlpoly.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,116 copying build/lib.linux-armv7l-3.9/yaff/conversion/cp2k.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,119 copying build/lib.linux-armv7l-3.9/yaff/conversion/__init__.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,121 copying build/lib.linux-armv7l-3.9/yaff/conversion/common.py -> build/bdist.linux-armv7l/wheel/yaff/conversion 2021-07-12T12:48:49,123 copying build/lib.linux-armv7l-3.9/yaff/system.py -> build/bdist.linux-armv7l/wheel/yaff 2021-07-12T12:48:49,127 copying build/lib.linux-armv7l-3.9/yaff/__init__.py -> build/bdist.linux-armv7l/wheel/yaff 2021-07-12T12:48:49,128 running install_egg_info 2021-07-12T12:48:49,140 Copying yaff.egg-info to build/bdist.linux-armv7l/wheel/yaff-1.3.0-py3.9.egg-info 2021-07-12T12:48:49,155 running install_scripts 2021-07-12T12:48:49,179 creating build/bdist.linux-armv7l/wheel/yaff-1.3.0.data 2021-07-12T12:48:49,180 creating build/bdist.linux-armv7l/wheel/yaff-1.3.0.data/scripts 2021-07-12T12:48:49,181 copying build/scripts-3.9/yaff-opttest -> build/bdist.linux-armv7l/wheel/yaff-1.3.0.data/scripts 2021-07-12T12:48:49,184 changing mode of build/bdist.linux-armv7l/wheel/yaff-1.3.0.data/scripts/yaff-opttest to 755 2021-07-12T12:48:49,212 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T12:48:49,218 creating build/bdist.linux-armv7l/wheel/yaff-1.3.0.dist-info/WHEEL 2021-07-12T12:48:49,221 creating '/tmp/pip-wheel-o02v_8tb/yaff-1.3.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:48:49,223 adding 'yaff/__init__.py' 2021-07-12T12:48:49,226 adding 'yaff/atselect.py' 2021-07-12T12:48:49,227 adding 'yaff/log.py' 2021-07-12T12:48:49,233 adding 'yaff/system.py' 2021-07-12T12:48:49,235 adding 'yaff/version.py' 2021-07-12T12:48:49,237 adding 'yaff/analysis/__init__.py' 2021-07-12T12:48:49,240 adding 'yaff/analysis/basic.py' 2021-07-12T12:48:49,242 adding 'yaff/analysis/blav.py' 2021-07-12T12:48:49,244 adding 'yaff/analysis/diffusion.py' 2021-07-12T12:48:49,246 adding 'yaff/analysis/hook.py' 2021-07-12T12:48:49,248 adding 'yaff/analysis/pca.py' 2021-07-12T12:48:49,251 adding 'yaff/analysis/rdf.py' 2021-07-12T12:48:49,253 adding 'yaff/analysis/spectrum.py' 2021-07-12T12:48:49,254 adding 'yaff/analysis/utils.py' 2021-07-12T12:48:49,256 adding 'yaff/analysis/test/__init__.py' 2021-07-12T12:48:49,257 adding 'yaff/analysis/test/common.py' 2021-07-12T12:48:49,258 adding 'yaff/analysis/test/test_basic.py' 2021-07-12T12:48:49,260 adding 'yaff/analysis/test/test_blav.py' 2021-07-12T12:48:49,261 adding 'yaff/analysis/test/test_diffusion.py' 2021-07-12T12:48:49,263 adding 'yaff/analysis/test/test_rdf.py' 2021-07-12T12:48:49,264 adding 'yaff/analysis/test/test_spectrum.py' 2021-07-12T12:48:49,266 adding 'yaff/conversion/__init__.py' 2021-07-12T12:48:49,267 adding 'yaff/conversion/common.py' 2021-07-12T12:48:49,269 adding 'yaff/conversion/cp2k.py' 2021-07-12T12:48:49,270 adding 'yaff/conversion/dlpoly.py' 2021-07-12T12:48:49,272 adding 'yaff/conversion/gaussian.py' 2021-07-12T12:48:49,273 adding 'yaff/conversion/xyz.py' 2021-07-12T12:48:49,275 adding 'yaff/conversion/test/__init__.py' 2021-07-12T12:48:49,277 adding 'yaff/conversion/test/test_cp2k.py' 2021-07-12T12:48:49,278 adding 'yaff/conversion/test/test_dlpoly.py' 2021-07-12T12:48:49,279 adding 'yaff/conversion/test/test_gaussian.py' 2021-07-12T12:48:49,281 adding 'yaff/conversion/test/test_xyz.py' 2021-07-12T12:48:49,284 adding 'yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N-pars-quickff.txt' 2021-07-12T12:48:49,302 adding 'yaff/data/opttest/DUBXXKHIPWMCDR-UHFFFAOYSA-N.chk' 2021-07-12T12:48:49,304 adding 'yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N-pars-quickff.txt' 2021-07-12T12:48:49,306 adding 'yaff/data/opttest/GZLNXARBGMAZKZ-KVFPUHGPSA-N.chk' 2021-07-12T12:48:49,308 adding 'yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N-pars-quickff.txt' 2021-07-12T12:48:49,316 adding 'yaff/data/opttest/JQWBTFGGAKGQPA-UHFFFAOYSA-N.chk' 2021-07-12T12:48:49,318 adding 'yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N-pars-quickff.txt' 2021-07-12T12:48:49,319 adding 'yaff/data/opttest/QRMPKOFEUHIBNM-ZKCHVHJHSA-N.chk' 2021-07-12T12:48:49,321 adding 'yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N-pars-quickff.txt' 2021-07-12T12:48:49,323 adding 'yaff/data/opttest/WFZUBZAEFXETBF-UHFFFAOYSA-N.chk' 2021-07-12T12:48:49,324 adding 'yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N-pars-quickff.txt' 2021-07-12T12:48:49,326 adding 'yaff/data/opttest/ZPJJOVNASWLIRQ-UHFFFAOYSA-N.chk' 2021-07-12T12:48:49,328 adding 'yaff/data/opttest/alpha_quartz.chk' 2021-07-12T12:48:49,329 adding 'yaff/data/opttest/alpha_quartz_distorted.chk' 2021-07-12T12:48:49,330 adding 'yaff/data/opttest/cases.txt' 2021-07-12T12:48:49,331 adding 'yaff/data/opttest/merlonite_debug.pot' 2021-07-12T12:48:49,333 adding 'yaff/data/opttest/merlonite_fragment.chk' 2021-07-12T12:48:49,334 adding 'yaff/data/opttest/merlonite_fragment_overbonded.chk' 2021-07-12T12:48:49,336 adding 'yaff/data/opttest/water_dimer.chk' 2021-07-12T12:48:49,382 adding 'yaff/data/test/chloro_pos.xyz' 2021-07-12T12:48:49,386 adding 'yaff/data/test/chloro_vol.txt' 2021-07-12T12:48:49,387 adding 'yaff/data/test/cp2k-1.ener' 2021-07-12T12:48:49,388 adding 'yaff/data/test/dlpoly_HISTORY_an1' 2021-07-12T12:48:49,390 adding 'yaff/data/test/dlpoly_HISTORY_an2' 2021-07-12T12:48:49,391 adding 'yaff/data/test/dlpoly_HISTORY_sam' 2021-07-12T12:48:49,393 adding 'yaff/data/test/dlpoly_HISTORY_uo' 2021-07-12T12:48:49,399 adding 'yaff/data/test/gaussian_sioh4_md.log' 2021-07-12T12:48:49,400 adding 'yaff/data/test/gaussian_sioh4_md.xyz' 2021-07-12T12:48:49,402 adding 'yaff/data/test/guaianolide.xyz' 2021-07-12T12:48:49,403 adding 'yaff/data/test/guaianolide_framework_ordered.xyz' 2021-07-12T12:48:49,404 adding 'yaff/data/test/nobornane.xyz' 2021-07-12T12:48:49,405 adding 'yaff/data/test/parameters_alkane.txt' 2021-07-12T12:48:49,407 adding 'yaff/data/test/parameters_bks.txt' 2021-07-12T12:48:49,408 adding 'yaff/data/test/parameters_fake_d3bj.txt' 2021-07-12T12:48:49,409 adding 'yaff/data/test/parameters_fake_dampdisp1.txt' 2021-07-12T12:48:49,410 adding 'yaff/data/test/parameters_fake_exprep1.txt' 2021-07-12T12:48:49,411 adding 'yaff/data/test/parameters_fake_lj.txt' 2021-07-12T12:48:49,412 adding 'yaff/data/test/parameters_fake_mm3.txt' 2021-07-12T12:48:49,413 adding 'yaff/data/test/parameters_fake_qmdffrep.txt' 2021-07-12T12:48:49,415 adding 'yaff/data/test/parameters_fake_torsion1.txt' 2021-07-12T12:48:49,416 adding 'yaff/data/test/parameters_fake_torsion2.txt' 2021-07-12T12:48:49,417 adding 'yaff/data/test/parameters_formaldehyde_inversion.txt' 2021-07-12T12:48:49,418 adding 'yaff/data/test/parameters_glycine_fixq.txt' 2021-07-12T12:48:49,419 adding 'yaff/data/test/parameters_glycine_torsion.txt' 2021-07-12T12:48:49,420 adding 'yaff/data/test/parameters_nacl.txt' 2021-07-12T12:48:49,421 adding 'yaff/data/test/parameters_polyene.txt' 2021-07-12T12:48:49,423 adding 'yaff/data/test/parameters_water.txt' 2021-07-12T12:48:49,424 adding 'yaff/data/test/parameters_water_bendaharm.txt' 2021-07-12T12:48:49,425 adding 'yaff/data/test/parameters_water_bendcharm.txt' 2021-07-12T12:48:49,427 adding 'yaff/data/test/parameters_water_bondcross.txt' 2021-07-12T12:48:49,428 adding 'yaff/data/test/parameters_water_bondfues.txt' 2021-07-12T12:48:49,429 adding 'yaff/data/test/parameters_water_bondharm.txt' 2021-07-12T12:48:49,430 adding 'yaff/data/test/parameters_water_cross.txt' 2021-07-12T12:48:49,431 adding 'yaff/data/test/parameters_water_dampdisp1.txt' 2021-07-12T12:48:49,432 adding 'yaff/data/test/parameters_water_dampdisp2.txt' 2021-07-12T12:48:49,433 adding 'yaff/data/test/parameters_water_exprep1.txt' 2021-07-12T12:48:49,434 adding 'yaff/data/test/parameters_water_exprep2.txt' 2021-07-12T12:48:49,436 adding 'yaff/data/test/parameters_water_exprep3.txt' 2021-07-12T12:48:49,437 adding 'yaff/data/test/parameters_water_fixq.txt' 2021-07-12T12:48:49,438 adding 'yaff/data/test/parameters_water_fixq_dielectric.txt' 2021-07-12T12:48:49,439 adding 'yaff/data/test/parameters_water_lj.txt' 2021-07-12T12:48:49,440 adding 'yaff/data/test/parameters_water_mm3.txt' 2021-07-12T12:48:49,441 adding 'yaff/data/test/parameters_water_ubharm.txt' 2021-07-12T12:48:49,443 adding 'yaff/data/test/rhodium_complex_nobornane.xyz' 2021-07-12T12:48:49,444 adding 'yaff/data/test/water_hessian.chk' 2021-07-12T12:48:49,445 adding 'yaff/data/test/water_trajectory.xyz' 2021-07-12T12:48:49,447 adding 'yaff/examples/.gitignore' 2021-07-12T12:48:49,449 adding 'yaff/examples/000_overview/parameters.txt' 2021-07-12T12:48:49,450 adding 'yaff/examples/000_overview/simulation.py' 2021-07-12T12:48:49,452 adding 'yaff/examples/000_overview/system.chk' 2021-07-12T12:48:49,454 adding 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2021-07-12T12:48:49,475 adding 'yaff/examples/003_water_thermostat/system.chk' 2021-07-12T12:48:49,477 adding 'yaff/examples/999_back_propagation/bp.py' 2021-07-12T12:48:49,480 adding 'yaff/pes/__init__.py' 2021-07-12T12:48:49,482 adding 'yaff/pes/cell.c' 2021-07-12T12:48:49,483 adding 'yaff/pes/cell.h' 2021-07-12T12:48:49,484 adding 'yaff/pes/cell.pxd' 2021-07-12T12:48:49,486 adding 'yaff/pes/constants.h' 2021-07-12T12:48:49,487 adding 'yaff/pes/dlist.c' 2021-07-12T12:48:49,488 adding 'yaff/pes/dlist.h' 2021-07-12T12:48:49,489 adding 'yaff/pes/dlist.pxd' 2021-07-12T12:48:49,491 adding 'yaff/pes/dlist.py' 2021-07-12T12:48:49,492 adding 'yaff/pes/ewald.c' 2021-07-12T12:48:49,494 adding 'yaff/pes/ewald.h' 2021-07-12T12:48:49,495 adding 'yaff/pes/ewald.pxd' 2021-07-12T12:48:50,109 adding 'yaff/pes/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:48:50,145 adding 'yaff/pes/ext.pyx' 2021-07-12T12:48:50,149 adding 'yaff/pes/ff.py' 2021-07-12T12:48:50,156 adding 'yaff/pes/generator.py' 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adding 'yaff/pes/test/test_pair_pot.py' 2021-07-12T12:48:50,230 adding 'yaff/pes/test/test_parameters.py' 2021-07-12T12:48:50,232 adding 'yaff/pes/test/test_pext.py' 2021-07-12T12:48:50,233 adding 'yaff/pes/test/test_scaling.py' 2021-07-12T12:48:50,235 adding 'yaff/pes/test/test_topology.py' 2021-07-12T12:48:50,236 adding 'yaff/pes/test/test_truncation.py' 2021-07-12T12:48:50,239 adding 'yaff/pes/test/test_vlist.py' 2021-07-12T12:48:50,242 adding 'yaff/sampling/__init__.py' 2021-07-12T12:48:50,245 adding 'yaff/sampling/dof.py' 2021-07-12T12:48:50,247 adding 'yaff/sampling/harmonic.py' 2021-07-12T12:48:50,249 adding 'yaff/sampling/io.py' 2021-07-12T12:48:50,251 adding 'yaff/sampling/iterative.py' 2021-07-12T12:48:50,256 adding 'yaff/sampling/npt.py' 2021-07-12T12:48:50,259 adding 'yaff/sampling/nvt.py' 2021-07-12T12:48:50,261 adding 'yaff/sampling/opt.py' 2021-07-12T12:48:50,263 adding 'yaff/sampling/trajectory.py' 2021-07-12T12:48:50,265 adding 'yaff/sampling/utils.py' 2021-07-12T12:48:50,268 adding 'yaff/sampling/verlet.py' 2021-07-12T12:48:50,270 adding 'yaff/sampling/test/__init__.py' 2021-07-12T12:48:50,272 adding 'yaff/sampling/test/common.py' 2021-07-12T12:48:50,273 adding 'yaff/sampling/test/test_dof.py' 2021-07-12T12:48:50,275 adding 'yaff/sampling/test/test_harmonic.py' 2021-07-12T12:48:50,276 adding 'yaff/sampling/test/test_npt.py' 2021-07-12T12:48:50,277 adding 'yaff/sampling/test/test_nvt.py' 2021-07-12T12:48:50,279 adding 'yaff/sampling/test/test_opt.py' 2021-07-12T12:48:50,280 adding 'yaff/sampling/test/test_utils.py' 2021-07-12T12:48:50,282 adding 'yaff/sampling/test/test_verlet.py' 2021-07-12T12:48:50,283 adding 'yaff/test/__init__.py' 2021-07-12T12:48:50,287 adding 'yaff/test/common.py' 2021-07-12T12:48:50,289 adding 'yaff/test/test_atselect.py' 2021-07-12T12:48:50,290 adding 'yaff/test/test_examples.py' 2021-07-12T12:48:50,292 adding 'yaff/test/test_system.py' 2021-07-12T12:48:50,294 adding 'yaff/tune/__init__.py' 2021-07-12T12:48:50,296 adding 'yaff/tune/cost.py' 2021-07-12T12:48:50,298 adding 'yaff/tune/transform.py' 2021-07-12T12:48:50,300 adding 'yaff/tune/test/__init__.py' 2021-07-12T12:48:50,301 adding 'yaff/tune/test/test_cost.py' 2021-07-12T12:48:50,302 adding 'yaff/tune/test/test_transform.py' 2021-07-12T12:48:50,305 adding 'yaff-1.3.0.data/scripts/yaff-opttest' 2021-07-12T12:48:50,313 adding 'yaff-1.3.0.dist-info/LICENSE.txt' 2021-07-12T12:48:50,314 adding 'yaff-1.3.0.dist-info/METADATA' 2021-07-12T12:48:50,315 adding 'yaff-1.3.0.dist-info/WHEEL' 2021-07-12T12:48:50,316 adding 'yaff-1.3.0.dist-info/top_level.txt' 2021-07-12T12:48:50,319 adding 'yaff-1.3.0.dist-info/RECORD' 2021-07-12T12:48:50,351 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:48:50,746 Building wheel for yaff (setup.py): finished with status 'done' 2021-07-12T12:48:50,775 Created wheel for yaff: filename=yaff-1.3.0-cp39-cp39-linux_armv7l.whl size=1742558 sha256=b7d58b67c3e944f93f1d908241a4438f074f69a0aecb3624519814faa0e9132c 2021-07-12T12:48:50,775 Stored in directory: /tmp/pip-ephem-wheel-cache-k0i7jms9/wheels/47/8f/9a/f76c1f2b76fe61865124494c95982f3f81f71179d3b59d9632 2021-07-12T12:48:50,793 Successfully built yaff 2021-07-12T12:48:50,853 Removed build tracker: '/tmp/pip-req-tracker-0xk23d80'