2021-07-12T12:50:36,311 Created temporary directory: /tmp/pip-ephem-wheel-cache-vi3su7y6
2021-07-12T12:50:36,314 Created temporary directory: /tmp/pip-req-tracker-62zb01ly
2021-07-12T12:50:36,315 Initialized build tracking at /tmp/pip-req-tracker-62zb01ly
2021-07-12T12:50:36,315 Created build tracker: /tmp/pip-req-tracker-62zb01ly
2021-07-12T12:50:36,315 Entered build tracker: /tmp/pip-req-tracker-62zb01ly
2021-07-12T12:50:36,316 Created temporary directory: /tmp/pip-wheel-8rjo6sh7
2021-07-12T12:50:36,346 1 location(s) to search for versions of molmod:
2021-07-12T12:50:36,346 * https://pypi.org/simple/molmod/
2021-07-12T12:50:36,346 Fetching project page and analyzing links: https://pypi.org/simple/molmod/
2021-07-12T12:50:36,347 Getting page https://pypi.org/simple/molmod/
2021-07-12T12:50:36,348 Found index url https://pypi.org/simple
2021-07-12T12:50:36,442   Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1
2021-07-12T12:50:36,443   Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0
2021-07-12T12:50:36,443   Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1
2021-07-12T12:50:36,443   Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2
2021-07-12T12:50:36,444   Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3
2021-07-12T12:50:36,444   Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4
2021-07-12T12:50:36,444   Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5
2021-07-12T12:50:36,444   Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0
2021-07-12T12:50:36,445   Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1
2021-07-12T12:50:36,445   Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2
2021-07-12T12:50:36,445   Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3
2021-07-12T12:50:36,446   Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4
2021-07-12T12:50:36,446   Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5
2021-07-12T12:50:36,446   Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6
2021-07-12T12:50:36,446   Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7
2021-07-12T12:50:36,447   Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8
2021-07-12T12:50:36,447 Skipping link: not a file: https://pypi.org/simple/molmod/
2021-07-12T12:50:36,467 Given no hashes to check 1 links for project 'molmod': discarding no candidates
2021-07-12T12:50:36,486 Collecting molmod==1.4.0
2021-07-12T12:50:36,488   Created temporary directory: /tmp/pip-unpack-ucij513f
2021-07-12T12:50:37,426   Downloading molmod-1.4.0.tar.gz (1.7 MB)
2021-07-12T12:50:38,334   Added molmod==1.4.0 from https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 to build tracker '/tmp/pip-req-tracker-62zb01ly'
2021-07-12T12:50:38,335     Running setup.py (path:/tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/setup.py) egg_info for package molmod
2021-07-12T12:50:38,335     Created temporary directory: /tmp/pip-pip-egg-info-km_9u8qf
2021-07-12T12:50:38,336     Running command python setup.py egg_info
2021-07-12T12:50:39,772     fatal: not a git repository (or any of the parent directories): .git
2021-07-12T12:50:39,986     Trying to get the version from git describe
2021-07-12T12:50:39,986     Trying to get the version from {} /tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/molmod/version.py
2021-07-12T12:50:39,987     Version according to /tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/molmod/version.py: 1.4.0
2021-07-12T12:50:39,987     running egg_info
2021-07-12T12:50:39,988     creating /tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info
2021-07-12T12:50:39,990     writing /tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/PKG-INFO
2021-07-12T12:50:39,992     writing dependency_links to /tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/dependency_links.txt
2021-07-12T12:50:39,994     writing requirements to /tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/requires.txt
2021-07-12T12:50:39,995     writing top-level names to /tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/top_level.txt
2021-07-12T12:50:39,996     writing manifest file '/tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/SOURCES.txt'
2021-07-12T12:50:40,182     reading manifest file '/tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/SOURCES.txt'
2021-07-12T12:50:40,184     reading manifest template 'MANIFEST.in'
2021-07-12T12:50:40,549     warning: no previously-included files matching 'ext.c' found under directory 'molmod'
2021-07-12T12:50:40,609     adding license file 'LICENSE.txt'
2021-07-12T12:50:40,621     writing manifest file '/tmp/pip-pip-egg-info-km_9u8qf/molmod.egg-info/SOURCES.txt'
2021-07-12T12:50:40,741   Source in /tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54 has version 1.4.0, which satisfies requirement molmod==1.4.0 from https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914
2021-07-12T12:50:40,742   Removed molmod==1.4.0 from https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 from build tracker '/tmp/pip-req-tracker-62zb01ly'
2021-07-12T12:50:40,746 Created temporary directory: /tmp/pip-unpack-fl0t8jnm
2021-07-12T12:50:40,747 Building wheels for collected packages: molmod
2021-07-12T12:50:40,751   Created temporary directory: /tmp/pip-wheel-asj9adge
2021-07-12T12:50:40,751   Building wheel for molmod (setup.py): started
2021-07-12T12:50:40,751   Destination directory: /tmp/pip-wheel-asj9adge
2021-07-12T12:50:40,752   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-asj9adge
2021-07-12T12:50:42,130   Trying to get the version from git describe
2021-07-12T12:50:42,140   fatal: not a git repository (or any of the parent directories): .git
2021-07-12T12:50:42,141   Trying to get the version from {} /tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/molmod/version.py
2021-07-12T12:50:42,142   Version according to /tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/molmod/version.py: 1.4.0
2021-07-12T12:50:42,367   running bdist_wheel
2021-07-12T12:50:42,372   running build
2021-07-12T12:50:42,372   running build_py
2021-07-12T12:50:42,509   creating build
2021-07-12T12:50:42,510   creating build/lib.linux-armv7l-3.9
2021-07-12T12:50:42,510   creating build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,511   copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,514   copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,516   copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,517   copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,520   copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,522   copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,524   copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,526   copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,529   copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,531   copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,536   copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,538   copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,543   copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,545   copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,547   copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,549   copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,552   copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,554   copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,557   copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,560   copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,562   copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,564   copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,566   copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,568   copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,570   copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,573   copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:42,577   creating build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,578   copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,581   copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,583   copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,585   copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,587   copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,589   copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,591   copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,593   copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,595   copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,598   copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,600   copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,601   copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,604   copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,607   copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,610   copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,612   copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,615   copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,617   copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,619   copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,621   copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,623   copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,625   copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,628   copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,630   copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:50:42,634   creating build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,635   copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,638   copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,640   copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,643   copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,645   copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,647   copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,649   copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,652   copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,654   copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,656   copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,659   copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,661   copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,663   copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,665   copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,668   copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,670   copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,672   copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,674   copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,676   copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:50:42,680   creating build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,681   copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,683   copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,685   copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,687   copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,689   copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,691   copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,693   copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,695   copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,697   copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,699   copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,701   copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,703   copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,705   copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,707   copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,709   copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,711   copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,713   copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:50:42,714   running egg_info
2021-07-12T12:50:42,756   writing molmod.egg-info/PKG-INFO
2021-07-12T12:50:42,757   writing dependency_links to molmod.egg-info/dependency_links.txt
2021-07-12T12:50:42,759   writing requirements to molmod.egg-info/requires.txt
2021-07-12T12:50:42,759   writing top-level names to molmod.egg-info/top_level.txt
2021-07-12T12:50:42,802   reading manifest file 'molmod.egg-info/SOURCES.txt'
2021-07-12T12:50:42,811   reading manifest template 'MANIFEST.in'
2021-07-12T12:50:43,158   warning: no previously-included files matching 'ext.c' found under directory 'molmod'
2021-07-12T12:50:43,217   adding license file 'LICENSE.txt'
2021-07-12T12:50:43,233   writing manifest file 'molmod.egg-info/SOURCES.txt'
2021-07-12T12:50:43,248   copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,251   copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,253   copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,256   copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,258   copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,260   copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,262   copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,264   copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,266   copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,268   copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,270   copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,273   copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,275   copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,277   copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,280   copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,282   copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,285   copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,287   copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:50:43,289   creating build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,290   copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,293   copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,296   copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,309   copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,325   copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,327   copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,331   copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:50:43,336   creating build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,338   copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,342   copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,359   copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,362   copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,364   copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,366   copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,391   copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,393   copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,395   copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,398   copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,400   copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,402   copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,404   copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,406   copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,409   copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,411   copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,413   copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,416   copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,419   copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,421   copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,435   copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,437   copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,439   copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,442   copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,458   copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,460   copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,462   copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,465   copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,467   copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,471   copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,473   copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,475   copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,477   copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,480   copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,482   copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,484   copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,487   copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,489   copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,496   copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,500   copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,502   copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,504   copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,506   copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,509   copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,511   copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,514   copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,516   copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,518   copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,521   copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,524   copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,527   copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,529   copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,531   copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,538   copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,542   copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,544   copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,547   copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,549   copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,551   copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,554   copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,556   copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:50:43,558   creating build/lib.linux-armv7l-3.9/molmod/examples
2021-07-12T12:50:43,558   creating build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:50:43,560   copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:50:43,562   copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:50:43,564   copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:50:43,567   creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,568   copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,570   copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,572   copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,574   copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,577   copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,579   copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:50:43,582   creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,583   copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,586   copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,588   copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,591   copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,593   copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,595   copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:50:43,598   creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,599   copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,601   copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,604   copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,606   copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,609   copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,613   copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,615   copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:50:43,617   creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:50:43,618   copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:50:43,621   copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:50:43,623   copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:50:43,625   copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:50:43,628   copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:50:43,639   running build_ext
2021-07-12T12:50:43,645   cythoning molmod/ext.pyx to molmod/ext.c
2021-07-12T12:50:44,257   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8rjo6sh7/molmod_0ac8d8ead6dc4e6185b3a85c4df23e54/molmod/ext.pyx
2021-07-12T12:50:44,258     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T12:50:51,569   building 'molmod.ext' extension
2021-07-12T12:50:51,570   creating build/temp.linux-armv7l-3.9
2021-07-12T12:50:51,570   creating build/temp.linux-armv7l-3.9/molmod
2021-07-12T12:50:51,571   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o
2021-07-12T12:50:51,820   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o
2021-07-12T12:50:52,225   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T12:50:52,226                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T12:50:52,226                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T12:50:52,226                    from molmod/ext.c:612:
2021-07-12T12:50:52,226   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T12:50:52,226      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T12:50:52,227         |  ^~~~~~~
2021-07-12T12:50:52,304   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’:
2021-07-12T12:50:52,306   molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,306    2923 |   __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,306         |                                        ^~
2021-07-12T12:50:52,307   molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,308    2929 |   __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,308         |                                        ^~
2021-07-12T12:50:52,309   molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,309    2963 |   __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,310         |                                        ^~
2021-07-12T12:50:52,311   molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,312    2969 |   __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,312         |                                        ^~
2021-07-12T12:50:52,348   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’:
2021-07-12T12:50:52,350   molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,350    3679 |   __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,350         |                                          ^~
2021-07-12T12:50:52,352   molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,352    3711 |   __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,352         |                                        ^~
2021-07-12T12:50:52,354   molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,354    3717 |   __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0);
2021-07-12T12:50:52,354         |                                        ^~
2021-07-12T12:50:52,399   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’:
2021-07-12T12:50:52,401   molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,402    4583 |   __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0);
2021-07-12T12:50:52,402         |                                            ^~
2021-07-12T12:50:52,449   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’:
2021-07-12T12:50:52,451   molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,452    5327 |   __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0);
2021-07-12T12:50:52,452         |                                            ^~
2021-07-12T12:50:52,500   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’:
2021-07-12T12:50:52,503   molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,503    5858 |   __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0);
2021-07-12T12:50:52,503         |                                       ^~
2021-07-12T12:50:52,562   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’:
2021-07-12T12:50:52,565   molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-12T12:50:52,566    6700 |   similarity_table_labels(__pyx_v_n, (&(*((long const  *) ( /* dim=0 */ ((char *) (((long const  *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides))));
2021-07-12T12:50:52,566         |                                      ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T12:50:52,566   In file included from molmod/ext.c:623:
2021-07-12T12:50:52,566   molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’
2021-07-12T12:50:52,566      30 | void similarity_table_labels(size_t n, long *labels, long* labels_table);
2021-07-12T12:50:52,567         |                                        ~~~~~~^~~~~~
2021-07-12T12:50:52,568   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’:
2021-07-12T12:50:52,571   molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,571    6831 |   __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0);
2021-07-12T12:50:52,572         |                                                    ^~
2021-07-12T12:50:52,586   molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-12T12:50:52,586    6929 |   similarity_table_distances(__pyx_v_n, (&(*((double const  *) ( /* dim=1 */ ((char *) (((double const  *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides))));
2021-07-12T12:50:52,586         |                                         ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T12:50:52,587   In file included from molmod/ext.c:623:
2021-07-12T12:50:52,587   molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’
2021-07-12T12:50:52,587      31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table);
2021-07-12T12:50:52,587         |                                           ~~~~~~~~^~~~~~~~~~~~~~~
2021-07-12T12:50:52,594   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’:
2021-07-12T12:50:52,597   molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,597    7185 |   __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0);
2021-07-12T12:50:52,597         |                                               ^~
2021-07-12T12:50:52,601   molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:50:52,602    7249 |   __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0);
2021-07-12T12:50:52,602         |                                               ^~
2021-07-12T12:51:09,254   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o
2021-07-12T12:51:09,769   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o
2021-07-12T12:51:09,906   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o
2021-07-12T12:51:10,086   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o
2021-07-12T12:51:10,399   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o
2021-07-12T12:51:10,769   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so
2021-07-12T12:51:10,964   installing to build/bdist.linux-armv7l/wheel
2021-07-12T12:51:10,965   running install
2021-07-12T12:51:10,967   running install_lib
2021-07-12T12:51:10,972   creating build/bdist.linux-armv7l
2021-07-12T12:51:10,972   creating build/bdist.linux-armv7l/wheel
2021-07-12T12:51:10,975   creating build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:10,977   copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:10,979   copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:10,982   copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:10,984   copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:10,986   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:10,989   creating build/bdist.linux-armv7l/wheel/molmod/examples
2021-07-12T12:51:10,997   creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,002   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,005   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,007   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,013   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,015   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,018   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,020   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:51:11,023   creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,024   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,026   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,028   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,030   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,032   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,033   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:51:11,036   creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,036   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,038   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,040   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,042   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,044   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,046   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:51:11,048   creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:51:11,049   copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:51:11,051   copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:51:11,053   copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:51:11,055   creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:51:11,056   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:51:11,058   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:51:11,060   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:51:11,062   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:51:11,071   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:51:11,072   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,074   copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,077   copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,080   copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,082   copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,085   copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,088   copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,090   copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,093   copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,098   copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,101   copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,106   copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,107   copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,110   copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,112   copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,114   copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,117   copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,119   copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,121   copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,123   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,125   copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,127   creating build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,128   copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,131   copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,133   copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,136   copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,138   copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,140   copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,143   copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,145   copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,148   copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,150   copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,152   copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,155   copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,156   copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,159   copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,161   copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,163   copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,165   copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,167   copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,169   copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:51:11,173   creating build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,173   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,175   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,177   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,179   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,182   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,183   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,185   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,188   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,190   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,192   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,194   copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,195   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,197   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,200   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,202   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,204   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,206   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:51:11,208   copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,209   copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,211   copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,214   copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,217   copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,219   copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,221   copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,224   creating build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,225   copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,227   copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,230   copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,247   copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,258   copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,260   copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,262   copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:51:11,267   creating build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,267   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,270   copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,272   copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,274   copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,276   copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,278   copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,280   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,282   copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,285   copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,287   copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,355   copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,358   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,362   copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,374   copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,376   copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,378   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,381   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,383   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,385   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,387   copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,401   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,403   copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,405   copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,407   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,409   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,410   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,414   copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,416   copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,418   copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,420   copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,422   copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,424   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,427   copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,429   copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,431   copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,433   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,435   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,437   copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,439   copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,441   copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,443   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,445   copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,447   copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,459   copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,461   copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,462   copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,464   copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,466   copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,468   copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,471   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,476   copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,500   copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,503   copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,504   copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,506   copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,509   copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,510   copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,512   copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,514   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,516   copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,518   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:51:11,520   copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,523   copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,553   copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,555   copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,556   copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,558   copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,560   copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,562   copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,564   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,566   copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,568   copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,570   copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:51:11,573   creating build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,574   copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,577   copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,579   copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,581   copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,583   copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,585   copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,587   copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,589   copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,591   copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,594   copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,596   copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,598   copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,601   copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,603   copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,606   copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,609   copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,612   copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,614   copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,616   copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,618   copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,620   copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,622   copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,624   copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,627   copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:51:11,629   running install_egg_info
2021-07-12T12:51:11,634   Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.0-py3.9.egg-info
2021-07-12T12:51:11,648   running install_scripts
2021-07-12T12:51:11,689   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-12T12:51:11,694   creating build/bdist.linux-armv7l/wheel/molmod-1.4.0.dist-info/WHEEL
2021-07-12T12:51:11,697   creating '/tmp/pip-wheel-asj9adge/molmod-1.4.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T12:51:11,700   adding 'molmod/__init__.py'
2021-07-12T12:51:11,702   adding 'molmod/binning.py'
2021-07-12T12:51:11,705   adding 'molmod/bonds.py'
2021-07-12T12:51:11,706   adding 'molmod/clusters.py'
2021-07-12T12:51:11,708   adding 'molmod/common.c'
2021-07-12T12:51:11,709   adding 'molmod/common.h'
2021-07-12T12:51:11,710   adding 'molmod/constants.py'
2021-07-12T12:51:11,933   adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T12:51:11,943   adding 'molmod/ext.pyx'
2021-07-12T12:51:11,945   adding 'molmod/ff.c'
2021-07-12T12:51:11,946   adding 'molmod/ff.h'
2021-07-12T12:51:11,947   adding 'molmod/ff.pxd'
2021-07-12T12:51:11,949   adding 'molmod/graphs.c'
2021-07-12T12:51:11,950   adding 'molmod/graphs.h'
2021-07-12T12:51:11,951   adding 'molmod/graphs.pxd'
2021-07-12T12:51:11,960   adding 'molmod/graphs.py'
2021-07-12T12:51:11,964   adding 'molmod/ic.py'
2021-07-12T12:51:11,965   adding 'molmod/isotopes.py'
2021-07-12T12:51:11,968   adding 'molmod/log.py'
2021-07-12T12:51:11,976   adding 'molmod/minimizer.py'
2021-07-12T12:51:11,979   adding 'molmod/molecular_graphs.py'
2021-07-12T12:51:11,981   adding 'molmod/molecules.c'
2021-07-12T12:51:11,982   adding 'molmod/molecules.h'
2021-07-12T12:51:11,983   adding 'molmod/molecules.pxd'
2021-07-12T12:51:11,985   adding 'molmod/molecules.py'
2021-07-12T12:51:11,987   adding 'molmod/pairff.py'
2021-07-12T12:51:11,989   adding 'molmod/periodic.py'
2021-07-12T12:51:11,990   adding 'molmod/quaternions.py'
2021-07-12T12:51:11,993   adding 'molmod/randomize.py'
2021-07-12T12:51:11,994   adding 'molmod/similarity.c'
2021-07-12T12:51:11,995   adding 'molmod/similarity.h'
2021-07-12T12:51:11,997   adding 'molmod/similarity.pxd'
2021-07-12T12:51:11,998   adding 'molmod/similarity.py'
2021-07-12T12:51:11,999   adding 'molmod/symmetry.py'
2021-07-12T12:51:12,001   adding 'molmod/toyff.py'
2021-07-12T12:51:12,004   adding 'molmod/transformations.py'
2021-07-12T12:51:12,006   adding 'molmod/unit_cells.c'
2021-07-12T12:51:12,007   adding 'molmod/unit_cells.h'
2021-07-12T12:51:12,008   adding 'molmod/unit_cells.pxd'
2021-07-12T12:51:12,010   adding 'molmod/unit_cells.py'
2021-07-12T12:51:12,012   adding 'molmod/units.py'
2021-07-12T12:51:12,015   adding 'molmod/utils.py'
2021-07-12T12:51:12,016   adding 'molmod/vectors.py'
2021-07-12T12:51:12,017   adding 'molmod/version.py'
2021-07-12T12:51:12,019   adding 'molmod/zmatrix.py'
2021-07-12T12:51:12,021   adding 'molmod/data/bonds.csv'
2021-07-12T12:51:12,023   adding 'molmod/data/bonds.ods'
2021-07-12T12:51:12,108   adding 'molmod/data/mass.mas03'
2021-07-12T12:51:12,192   adding 'molmod/data/nubtab03.asc'
2021-07-12T12:51:12,198   adding 'molmod/data/periodic.csv'
2021-07-12T12:51:12,201   adding 'molmod/data/periodic.ods'
2021-07-12T12:51:12,216   adding 'molmod/data/toyff_angles.txt'
2021-07-12T12:51:12,223   adding 'molmod/data/test/1LJL_Cys10.cml'
2021-07-12T12:51:12,355   adding 'molmod/data/test/1TOH.b3lyp.fchk'
2021-07-12T12:51:12,361   adding 'molmod/data/test/1TOH.b3lyp.trim.fchk'
2021-07-12T12:51:12,362   adding 'molmod/data/test/5ringOH.xyz'
2021-07-12T12:51:12,364   adding 'molmod/data/test/CID_22898828.sdf'
2021-07-12T12:51:12,608   adding 'molmod/data/test/PCGamess_PUNCH'
2021-07-12T12:51:12,617   adding 'molmod/data/test/SID_31646545.sdf'
2021-07-12T12:51:12,618   adding 'molmod/data/test/SID_31646548.sdf'
2021-07-12T12:51:12,620   adding 'molmod/data/test/SID_40363570.sdf'
2021-07-12T12:51:12,621   adding 'molmod/data/test/SID_40363571.sdf'
2021-07-12T12:51:12,622   adding 'molmod/data/test/SID_41893278.sdf'
2021-07-12T12:51:12,624   adding 'molmod/data/test/SID_41893280.sdf'
2021-07-12T12:51:12,625   adding 'molmod/data/test/SID_54258192.sdf'
2021-07-12T12:51:12,626   adding 'molmod/data/test/SID_55127927.sdf'
2021-07-12T12:51:12,628   adding 'molmod/data/test/SID_55488598.sdf'
2021-07-12T12:51:12,629   adding 'molmod/data/test/SID_56274343.sdf'
2021-07-12T12:51:12,631   adding 'molmod/data/test/TRAJECTORY_H2_CPMD'
2021-07-12T12:51:12,634   adding 'molmod/data/test/alanine.cube'
2021-07-12T12:51:12,635   adding 'molmod/data/test/argon.xyz'
2021-07-12T12:51:12,711   adding 'molmod/data/test/bartek.atrj'
2021-07-12T12:51:12,715   adding 'molmod/data/test/benzene.xyz'
2021-07-12T12:51:12,716   adding 'molmod/data/test/butane.xyz'
2021-07-12T12:51:12,718   adding 'molmod/data/test/caplayer.cml'
2021-07-12T12:51:12,786   adding 'molmod/data/test/crystal_api.out'
2021-07-12T12:51:12,791   adding 'molmod/data/test/cyclopentane.xyz'
2021-07-12T12:51:12,792   adding 'molmod/data/test/dinitrogen.xyz'
2021-07-12T12:51:12,794   adding 'molmod/data/test/dlpoly_HISTORY'
2021-07-12T12:51:12,795   adding 'molmod/data/test/dlpoly_HISTORY_an2'
2021-07-12T12:51:12,800   adding 'molmod/data/test/dlpoly_OUTPUT'
2021-07-12T12:51:12,801   adding 'molmod/data/test/dopamine.xyz'
2021-07-12T12:51:12,803   adding 'molmod/data/test/ethane.xyz'
2021-07-12T12:51:12,804   adding 'molmod/data/test/ethene.xyz'
2021-07-12T12:51:12,805   adding 'molmod/data/test/ethene_ethyl_trans.xyz'
2021-07-12T12:51:12,806   adding 'molmod/data/test/example.sdf'
2021-07-12T12:51:12,808   adding 'molmod/data/test/formol.xyz'
2021-07-12T12:51:12,809   adding 'molmod/data/test/funny.xyz'
2021-07-12T12:51:12,810   adding 'molmod/data/test/h3zrosihohosioh3.xyz'
2021-07-12T12:51:12,840   adding 'molmod/data/test/il2.pdb'
2021-07-12T12:51:12,844   adding 'molmod/data/test/lammps_dump.txt'
2021-07-12T12:51:12,845   adding 'molmod/data/test/lau.xyz'
2021-07-12T12:51:12,846   adding 'molmod/data/test/octane.xyz'
2021-07-12T12:51:12,848   adding 'molmod/data/test/oh3siozroh3.xyz'
2021-07-12T12:51:12,849   adding 'molmod/data/test/opt_5ring10T.xyz'
2021-07-12T12:51:12,851   adding 'molmod/data/test/opt_5ring12T.xyz'
2021-07-12T12:51:12,852   adding 'molmod/data/test/opt_6_6ring.xyz'
2021-07-12T12:51:12,854   adding 'molmod/data/test/opt_6ring.xyz'
2021-07-12T12:51:12,855   adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz'
2021-07-12T12:51:12,857   adding 'molmod/data/test/pentapeptide.psf'
2021-07-12T12:51:12,859   adding 'molmod/data/test/precursor.xyz'
2021-07-12T12:51:12,860   adding 'molmod/data/test/probes.xyz'
2021-07-12T12:51:12,862   adding 'molmod/data/test/tea.xyz'
2021-07-12T12:51:12,863   adding 'molmod/data/test/tetra.xyz'
2021-07-12T12:51:12,885   adding 'molmod/data/test/thf.psf'
2021-07-12T12:51:12,893   adding 'molmod/data/test/thf.xyz'
2021-07-12T12:51:12,895   adding 'molmod/data/test/thf_64.cell'
2021-07-12T12:51:12,896   adding 'molmod/data/test/thf_single.xyz'
2021-07-12T12:51:12,897   adding 'molmod/data/test/tpa.xyz'
2021-07-12T12:51:12,898   adding 'molmod/data/test/water.xyz'
2021-07-12T12:51:12,899   adding 'molmod/data/test/water2.gro'
2021-07-12T12:51:12,901   adding 'molmod/data/test/water_md.inp'
2021-07-12T12:51:12,902   adding 'molmod/data/test/zr4o8-3.xyz'
2021-07-12T12:51:12,905   adding 'molmod/examples/000_units/a_reaction.py'
2021-07-12T12:51:12,906   adding 'molmod/examples/000_units/b_chbond.py'
2021-07-12T12:51:12,907   adding 'molmod/examples/000_units/c_h2rot.py'
2021-07-12T12:51:12,909   adding 'molmod/examples/001_molecules/a_convert.py'
2021-07-12T12:51:12,910   adding 'molmod/examples/001_molecules/b_com.py'
2021-07-12T12:51:12,911   adding 'molmod/examples/001_molecules/c_carbon.py'
2021-07-12T12:51:12,913   adding 'molmod/examples/001_molecules/d_size.py'
2021-07-12T12:51:12,914   adding 'molmod/examples/001_molecules/e_shape.py'
2021-07-12T12:51:12,916   adding 'molmod/examples/001_molecules/ibuprofen.sdf'
2021-07-12T12:51:12,918   adding 'molmod/examples/002_graphs/a_graphs.py'
2021-07-12T12:51:12,919   adding 'molmod/examples/002_graphs/b_neighbors.py'
2021-07-12T12:51:12,921   adding 'molmod/examples/002_graphs/c_distances.py'
2021-07-12T12:51:12,922   adding 'molmod/examples/002_graphs/caffeine.xyz'
2021-07-12T12:51:12,923   adding 'molmod/examples/002_graphs/d_symmetries.py'
2021-07-12T12:51:12,924   adding 'molmod/examples/002_graphs/ethanol.xyz'
2021-07-12T12:51:12,926   adding 'molmod/examples/003_internal_coordinates/a_bond_length.py'
2021-07-12T12:51:12,928   adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py'
2021-07-12T12:51:12,929   adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py'
2021-07-12T12:51:12,931   adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py'
2021-07-12T12:51:12,941   adding 'molmod/examples/003_internal_coordinates/dopamine.fchk'
2021-07-12T12:51:12,943   adding 'molmod/examples/003_internal_coordinates/dopamine.xyz'
2021-07-12T12:51:12,944   adding 'molmod/examples/003_internal_coordinates/propane.xyz'
2021-07-12T12:51:12,946   adding 'molmod/examples/004_patterns/a_propane_types.py'
2021-07-12T12:51:12,947   adding 'molmod/examples/004_patterns/b_dopamine_types.py'
2021-07-12T12:51:12,949   adding 'molmod/examples/004_patterns/dopamine.xyz'
2021-07-12T12:51:12,950   adding 'molmod/examples/004_patterns/mfi_fragment.xyz'
2021-07-12T12:51:12,952   adding 'molmod/examples/004_patterns/propane.xyz'
2021-07-12T12:51:12,954   adding 'molmod/io/__init__.py'
2021-07-12T12:51:12,955   adding 'molmod/io/atrj.py'
2021-07-12T12:51:12,957   adding 'molmod/io/chk.py'
2021-07-12T12:51:12,959   adding 'molmod/io/cml.py'
2021-07-12T12:51:12,961   adding 'molmod/io/common.py'
2021-07-12T12:51:12,963   adding 'molmod/io/cp2k.py'
2021-07-12T12:51:12,964   adding 'molmod/io/cpmd.py'
2021-07-12T12:51:12,966   adding 'molmod/io/crystal.py'
2021-07-12T12:51:12,968   adding 'molmod/io/cube.py'
2021-07-12T12:51:12,970   adding 'molmod/io/dlpoly.py'
2021-07-12T12:51:12,972   adding 'molmod/io/fchk.py'
2021-07-12T12:51:12,974   adding 'molmod/io/gamess.py'
2021-07-12T12:51:12,976   adding 'molmod/io/gromacs.py'
2021-07-12T12:51:12,977   adding 'molmod/io/lammps.py'
2021-07-12T12:51:12,979   adding 'molmod/io/number_state.py'
2021-07-12T12:51:12,981   adding 'molmod/io/pdb.py'
2021-07-12T12:51:12,983   adding 'molmod/io/psf.py'
2021-07-12T12:51:12,985   adding 'molmod/io/sdf.py'
2021-07-12T12:51:12,987   adding 'molmod/io/xyz.py'
2021-07-12T12:51:12,989   adding 'molmod/io/test/__init__.py'
2021-07-12T12:51:12,991   adding 'molmod/io/test/test_atrj.py'
2021-07-12T12:51:12,992   adding 'molmod/io/test/test_cml.py'
2021-07-12T12:51:12,994   adding 'molmod/io/test/test_cp2k.py'
2021-07-12T12:51:12,995   adding 'molmod/io/test/test_cpmd.py'
2021-07-12T12:51:12,997   adding 'molmod/io/test/test_crystal.py'
2021-07-12T12:51:12,998   adding 'molmod/io/test/test_cube.py'
2021-07-12T12:51:13,000   adding 'molmod/io/test/test_dlpoly.py'
2021-07-12T12:51:13,001   adding 'molmod/io/test/test_fchk.py'
2021-07-12T12:51:13,003   adding 'molmod/io/test/test_gamess.py'
2021-07-12T12:51:13,004   adding 'molmod/io/test/test_gromacs.py'
2021-07-12T12:51:13,006   adding 'molmod/io/test/test_lammps.py'
2021-07-12T12:51:13,007   adding 'molmod/io/test/test_number_state.py'
2021-07-12T12:51:13,008   adding 'molmod/io/test/test_pdb.py'
2021-07-12T12:51:13,011   adding 'molmod/io/test/test_psf.py'
2021-07-12T12:51:13,012   adding 'molmod/io/test/test_sdf.py'
2021-07-12T12:51:13,014   adding 'molmod/io/test/test_xyz.py'
2021-07-12T12:51:13,016   adding 'molmod/test/__init__.py'
2021-07-12T12:51:13,018   adding 'molmod/test/common.py'
2021-07-12T12:51:13,019   adding 'molmod/test/test_binning.py'
2021-07-12T12:51:13,021   adding 'molmod/test/test_clusters.py'
2021-07-12T12:51:13,022   adding 'molmod/test/test_data.py'
2021-07-12T12:51:13,024   adding 'molmod/test/test_examples.py'
2021-07-12T12:51:13,027   adding 'molmod/test/test_graphs.py'
2021-07-12T12:51:13,029   adding 'molmod/test/test_ic.py'
2021-07-12T12:51:13,031   adding 'molmod/test/test_log.py'
2021-07-12T12:51:13,032   adding 'molmod/test/test_minimizer.py'
2021-07-12T12:51:13,036   adding 'molmod/test/test_molecular_graphs.py'
2021-07-12T12:51:13,037   adding 'molmod/test/test_molecules.py'
2021-07-12T12:51:13,040   adding 'molmod/test/test_pairff.py'
2021-07-12T12:51:13,041   adding 'molmod/test/test_quaternions.py'
2021-07-12T12:51:13,043   adding 'molmod/test/test_randomize.py'
2021-07-12T12:51:13,045   adding 'molmod/test/test_similarity.py'
2021-07-12T12:51:13,046   adding 'molmod/test/test_symmetry.py'
2021-07-12T12:51:13,048   adding 'molmod/test/test_toyff.py'
2021-07-12T12:51:13,051   adding 'molmod/test/test_transformations.py'
2021-07-12T12:51:13,053   adding 'molmod/test/test_unit_cells.py'
2021-07-12T12:51:13,055   adding 'molmod/test/test_units.py'
2021-07-12T12:51:13,056   adding 'molmod/test/test_utils.py'
2021-07-12T12:51:13,057   adding 'molmod/test/test_vectors.py'
2021-07-12T12:51:13,059   adding 'molmod/test/test_zmatrix.py'
2021-07-12T12:51:13,066   adding 'molmod-1.4.0.dist-info/LICENSE.txt'
2021-07-12T12:51:13,068   adding 'molmod-1.4.0.dist-info/METADATA'
2021-07-12T12:51:13,069   adding 'molmod-1.4.0.dist-info/WHEEL'
2021-07-12T12:51:13,070   adding 'molmod-1.4.0.dist-info/top_level.txt'
2021-07-12T12:51:13,073   adding 'molmod-1.4.0.dist-info/RECORD'
2021-07-12T12:51:13,133   removing build/bdist.linux-armv7l/wheel
2021-07-12T12:51:13,586   Building wheel for molmod (setup.py): finished with status 'done'
2021-07-12T12:51:13,613   Created wheel for molmod: filename=molmod-1.4.0-cp39-cp39-linux_armv7l.whl size=1953677 sha256=94d51724484330f780e66851f0b3d5a04a572d624186dd184e5df63f93055fde
2021-07-12T12:51:13,614   Stored in directory: /tmp/pip-ephem-wheel-cache-vi3su7y6/wheels/b7/86/7a/3e36a0e1b53cf1e9cfe5d72959fb2ac951ad12f4c1cb19e3d8
2021-07-12T12:51:13,632 Successfully built molmod
2021-07-12T12:51:13,715 Removed build tracker: '/tmp/pip-req-tracker-62zb01ly'