2021-07-12T12:51:10,989 Created temporary directory: /tmp/pip-ephem-wheel-cache-1r68jb6o 2021-07-12T12:51:11,003 Created temporary directory: /tmp/pip-req-tracker-3h885d7q 2021-07-12T12:51:11,004 Initialized build tracking at /tmp/pip-req-tracker-3h885d7q 2021-07-12T12:51:11,004 Created build tracker: /tmp/pip-req-tracker-3h885d7q 2021-07-12T12:51:11,004 Entered build tracker: /tmp/pip-req-tracker-3h885d7q 2021-07-12T12:51:11,005 Created temporary directory: /tmp/pip-wheel-2po0x7af 2021-07-12T12:51:11,036 1 location(s) to search for versions of molmod: 2021-07-12T12:51:11,036 * https://pypi.org/simple/molmod/ 2021-07-12T12:51:11,036 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-12T12:51:11,037 Getting page https://pypi.org/simple/molmod/ 2021-07-12T12:51:11,038 Found index url https://pypi.org/simple 2021-07-12T12:51:11,132 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-12T12:51:11,133 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-12T12:51:11,133 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-12T12:51:11,133 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-12T12:51:11,133 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-12T12:51:11,134 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-12T12:51:11,134 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-12T12:51:11,134 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-12T12:51:11,135 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-12T12:51:11,135 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-12T12:51:11,135 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-12T12:51:11,135 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-12T12:51:11,136 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-12T12:51:11,136 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-12T12:51:11,136 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-12T12:51:11,137 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-12T12:51:11,137 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-12T12:51:11,157 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-12T12:51:11,176 Collecting molmod==1.4.1 2021-07-12T12:51:11,177 Created temporary directory: /tmp/pip-unpack-a9ov0srg 2021-07-12T12:51:12,363 Downloading molmod-1.4.1.tar.gz (1.7 MB) 2021-07-12T12:51:13,300 Added molmod==1.4.1 from https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 to build tracker '/tmp/pip-req-tracker-3h885d7q' 2021-07-12T12:51:13,302 Running setup.py (path:/tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/setup.py) egg_info for package molmod 2021-07-12T12:51:13,303 Created temporary directory: /tmp/pip-pip-egg-info-guyrdzdf 2021-07-12T12:51:13,303 Running command python setup.py egg_info 2021-07-12T12:51:14,738 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:51:14,986 Trying to get the version from git describe 2021-07-12T12:51:14,986 Trying to get the version from {} /tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/molmod/version.py 2021-07-12T12:51:14,986 Version according to /tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/molmod/version.py: 1.4.1 2021-07-12T12:51:14,987 running egg_info 2021-07-12T12:51:14,988 creating /tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info 2021-07-12T12:51:14,990 writing /tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/PKG-INFO 2021-07-12T12:51:14,992 writing dependency_links to /tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/dependency_links.txt 2021-07-12T12:51:14,994 writing requirements to /tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/requires.txt 2021-07-12T12:51:14,995 writing top-level names to /tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/top_level.txt 2021-07-12T12:51:14,997 writing manifest file '/tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/SOURCES.txt' 2021-07-12T12:51:15,154 reading manifest file '/tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/SOURCES.txt' 2021-07-12T12:51:15,155 reading manifest template 'MANIFEST.in' 2021-07-12T12:51:15,564 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:51:15,630 adding license file 'LICENSE.txt' 2021-07-12T12:51:15,641 writing manifest file '/tmp/pip-pip-egg-info-guyrdzdf/molmod.egg-info/SOURCES.txt' 2021-07-12T12:51:15,754 Source in /tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69 has version 1.4.1, which satisfies requirement molmod==1.4.1 from https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 2021-07-12T12:51:15,755 Removed molmod==1.4.1 from https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 from build tracker '/tmp/pip-req-tracker-3h885d7q' 2021-07-12T12:51:15,759 Created temporary directory: /tmp/pip-unpack-6r7rr2uk 2021-07-12T12:51:15,760 Building wheels for collected packages: molmod 2021-07-12T12:51:15,764 Created temporary directory: /tmp/pip-wheel-_icimdez 2021-07-12T12:51:15,764 Building wheel for molmod (setup.py): started 2021-07-12T12:51:15,764 Destination directory: /tmp/pip-wheel-_icimdez 2021-07-12T12:51:15,765 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_icimdez 2021-07-12T12:51:17,384 Trying to get the version from git describe 2021-07-12T12:51:17,395 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:51:17,396 Trying to get the version from {} /tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/molmod/version.py 2021-07-12T12:51:17,397 Version according to /tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/molmod/version.py: 1.4.1 2021-07-12T12:51:17,591 running bdist_wheel 2021-07-12T12:51:17,596 running build 2021-07-12T12:51:17,597 running build_py 2021-07-12T12:51:17,730 creating build 2021-07-12T12:51:17,730 creating build/lib.linux-armv7l-3.9 2021-07-12T12:51:17,731 creating build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,732 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,734 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,737 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,739 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,742 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,743 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,746 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,748 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,750 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,754 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,756 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,758 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,760 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,762 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,764 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,766 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,768 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,771 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,773 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,777 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,778 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,781 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,783 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,785 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,787 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,789 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:17,792 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,793 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,796 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,798 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,800 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,802 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,804 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,805 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,807 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,810 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,811 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,814 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,815 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,818 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,820 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,822 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,824 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,827 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,829 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,831 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,833 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,834 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,837 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,839 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,841 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:51:17,844 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,845 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,847 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,849 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,851 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,853 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,855 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,857 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,859 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,861 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,864 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,866 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,868 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,870 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,872 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,874 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,877 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,879 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,881 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,883 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:51:17,887 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,887 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,889 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,891 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,893 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,895 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,896 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,898 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,900 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,902 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,904 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,905 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,907 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,909 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,911 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,913 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,915 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,917 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:51:17,918 running egg_info 2021-07-12T12:51:17,932 writing molmod.egg-info/PKG-INFO 2021-07-12T12:51:17,934 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-12T12:51:17,935 writing requirements to molmod.egg-info/requires.txt 2021-07-12T12:51:17,936 writing top-level names to molmod.egg-info/top_level.txt 2021-07-12T12:51:17,948 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:51:17,955 reading manifest template 'MANIFEST.in' 2021-07-12T12:51:18,283 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:51:18,338 adding license file 'LICENSE.txt' 2021-07-12T12:51:18,351 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:51:18,367 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,369 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,371 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,373 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,376 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,378 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,380 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,382 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,384 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,386 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,388 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,390 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,392 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,395 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,397 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,399 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,402 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,404 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:51:18,406 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,407 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,409 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,412 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,422 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,436 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,439 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,442 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:51:18,447 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,447 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,451 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,473 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,475 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,478 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,480 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,516 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,519 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,521 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,524 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,526 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,529 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,532 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,535 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,537 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,541 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,545 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,548 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,552 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,556 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,568 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,571 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,574 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,577 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,594 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,596 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,598 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,601 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,603 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,608 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,610 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,613 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,616 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,619 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,622 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,625 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,628 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,630 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,638 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,642 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,644 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,647 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,650 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,652 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,655 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,658 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,661 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,663 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,667 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,670 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,672 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,675 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,677 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,684 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,688 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,691 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,694 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,697 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,699 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,702 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,705 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:51:18,707 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-12T12:51:18,708 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:51:18,710 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:51:18,712 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:51:18,715 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:51:18,718 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,719 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,722 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,724 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,727 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,730 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,732 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:51:18,735 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,736 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,739 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,742 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,745 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,747 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,750 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:51:18,752 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,753 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,756 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,758 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,761 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,765 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,769 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,772 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:51:18,774 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:51:18,776 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:51:18,778 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:51:18,781 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:51:18,783 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:51:18,786 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:51:18,797 running build_ext 2021-07-12T12:51:18,802 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-12T12:51:19,423 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2po0x7af/molmod_ea5c310f20bd48959543ac7e3dd4ad69/molmod/ext.pyx 2021-07-12T12:51:19,424 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:51:26,750 building 'molmod.ext' extension 2021-07-12T12:51:26,751 creating build/temp.linux-armv7l-3.9 2021-07-12T12:51:26,751 creating build/temp.linux-armv7l-3.9/molmod 2021-07-12T12:51:26,753 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-12T12:51:26,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-12T12:51:27,373 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:51:27,373 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:51:27,373 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:51:27,373 from molmod/ext.c:612: 2021-07-12T12:51:27,374 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:51:27,374 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:51:27,374 | ^~~~~~~ 2021-07-12T12:51:27,453 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-12T12:51:27,454 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,454 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,454 | ^~ 2021-07-12T12:51:27,456 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,456 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,456 | ^~ 2021-07-12T12:51:27,457 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,458 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,458 | ^~ 2021-07-12T12:51:27,459 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,459 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,459 | ^~ 2021-07-12T12:51:27,497 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-12T12:51:27,498 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,498 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,499 | ^~ 2021-07-12T12:51:27,500 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,501 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,501 | ^~ 2021-07-12T12:51:27,502 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,502 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:51:27,503 | ^~ 2021-07-12T12:51:27,548 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-12T12:51:27,550 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,550 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:51:27,550 | ^~ 2021-07-12T12:51:27,597 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-12T12:51:27,600 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,600 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:51:27,600 | ^~ 2021-07-12T12:51:27,649 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-12T12:51:27,652 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,652 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-12T12:51:27,652 | ^~ 2021-07-12T12:51:27,711 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-12T12:51:27,714 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:51:27,715 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-12T12:51:27,715 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:51:27,715 In file included from molmod/ext.c:623: 2021-07-12T12:51:27,715 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-12T12:51:27,715 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-12T12:51:27,716 | ~~~~~~^~~~~~ 2021-07-12T12:51:27,717 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-12T12:51:27,720 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,720 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-12T12:51:27,720 | ^~ 2021-07-12T12:51:27,735 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:51:27,735 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-12T12:51:27,735 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:51:27,736 In file included from molmod/ext.c:623: 2021-07-12T12:51:27,736 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-12T12:51:27,736 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-12T12:51:27,736 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-12T12:51:27,742 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-12T12:51:27,746 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,746 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-12T12:51:27,746 | ^~ 2021-07-12T12:51:27,750 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:51:27,750 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-12T12:51:27,750 | ^~ 2021-07-12T12:51:43,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-12T12:51:44,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-12T12:51:44,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-12T12:51:44,486 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-12T12:51:44,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-12T12:51:45,072 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:51:45,265 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:51:45,265 running install 2021-07-12T12:51:45,267 running install_lib 2021-07-12T12:51:45,272 creating build/bdist.linux-armv7l 2021-07-12T12:51:45,272 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:51:45,275 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,276 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,278 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,282 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,282 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,285 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,287 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,289 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,291 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,293 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,295 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,297 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,299 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,301 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,304 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,306 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,309 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,311 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,314 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,317 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,319 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,322 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,324 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,326 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,328 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,331 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,333 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,336 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:51:45,338 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,340 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,342 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,345 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,347 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,350 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,353 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,355 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,359 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,360 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,364 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,365 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,367 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,369 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,371 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,373 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,375 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,377 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,379 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,381 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,384 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,386 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,388 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,390 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,392 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,394 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,396 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,398 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:51:45,400 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,403 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,405 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,408 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,409 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,412 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,414 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,417 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,419 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,422 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,424 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,427 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,429 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,431 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,434 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,437 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,439 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,442 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:51:45,444 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,446 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,449 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,451 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,454 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,456 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,458 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,460 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,465 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,467 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,504 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,506 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,508 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,511 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-12T12:51:45,513 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,513 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,515 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,517 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,520 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,521 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,524 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,527 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:51:45,531 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,532 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,535 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,538 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,541 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,543 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,546 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:51:45,548 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:51:45,549 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:51:45,551 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:51:45,554 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:51:45,556 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:51:45,559 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:51:45,563 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,564 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,567 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,570 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,573 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,576 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,579 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:51:45,582 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:51:45,583 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:51:45,585 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:51:45,588 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:51:45,590 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,593 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,596 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,599 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,601 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,605 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,607 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,609 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,612 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,615 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,619 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,622 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,624 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,627 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,629 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,631 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,633 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,635 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,637 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,639 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,642 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,644 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,647 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,649 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,651 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,652 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,659 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,661 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,663 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,665 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,667 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,669 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,670 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,673 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,675 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,676 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,678 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,680 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,682 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,684 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,687 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,689 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,691 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,697 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,699 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,701 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,703 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,705 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,707 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,708 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,710 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,712 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,735 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,737 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,739 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,740 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,743 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,761 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,763 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,766 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,768 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,771 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,774 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,776 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,790 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,793 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,795 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,797 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,799 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,809 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,811 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,813 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,816 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:51:45,819 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,822 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,825 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,827 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,838 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,852 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,855 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:51:45,857 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,860 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,862 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,866 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,868 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,870 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,873 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,875 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,877 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,879 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,881 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,884 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:51:45,885 running install_egg_info 2021-07-12T12:51:45,896 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.1-py3.9.egg-info 2021-07-12T12:51:45,910 running install_scripts 2021-07-12T12:51:45,965 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T12:51:45,971 creating build/bdist.linux-armv7l/wheel/molmod-1.4.1.dist-info/WHEEL 2021-07-12T12:51:45,974 creating '/tmp/pip-wheel-_icimdez/molmod-1.4.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:51:45,977 adding 'molmod/__init__.py' 2021-07-12T12:51:45,979 adding 'molmod/binning.py' 2021-07-12T12:51:45,981 adding 'molmod/bonds.py' 2021-07-12T12:51:45,982 adding 'molmod/clusters.py' 2021-07-12T12:51:45,984 adding 'molmod/common.c' 2021-07-12T12:51:45,985 adding 'molmod/common.h' 2021-07-12T12:51:45,986 adding 'molmod/constants.py' 2021-07-12T12:51:46,213 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:51:46,224 adding 'molmod/ext.pyx' 2021-07-12T12:51:46,225 adding 'molmod/ff.c' 2021-07-12T12:51:46,226 adding 'molmod/ff.h' 2021-07-12T12:51:46,227 adding 'molmod/ff.pxd' 2021-07-12T12:51:46,229 adding 'molmod/graphs.c' 2021-07-12T12:51:46,230 adding 'molmod/graphs.h' 2021-07-12T12:51:46,231 adding 'molmod/graphs.pxd' 2021-07-12T12:51:46,240 adding 'molmod/graphs.py' 2021-07-12T12:51:46,244 adding 'molmod/ic.py' 2021-07-12T12:51:46,245 adding 'molmod/isotopes.py' 2021-07-12T12:51:46,248 adding 'molmod/log.py' 2021-07-12T12:51:46,256 adding 'molmod/minimizer.py' 2021-07-12T12:51:46,260 adding 'molmod/molecular_graphs.py' 2021-07-12T12:51:46,262 adding 'molmod/molecules.c' 2021-07-12T12:51:46,263 adding 'molmod/molecules.h' 2021-07-12T12:51:46,264 adding 'molmod/molecules.pxd' 2021-07-12T12:51:46,266 adding 'molmod/molecules.py' 2021-07-12T12:51:46,268 adding 'molmod/pairff.py' 2021-07-12T12:51:46,270 adding 'molmod/periodic.py' 2021-07-12T12:51:46,271 adding 'molmod/quaternions.py' 2021-07-12T12:51:46,274 adding 'molmod/randomize.py' 2021-07-12T12:51:46,276 adding 'molmod/similarity.c' 2021-07-12T12:51:46,277 adding 'molmod/similarity.h' 2021-07-12T12:51:46,278 adding 'molmod/similarity.pxd' 2021-07-12T12:51:46,279 adding 'molmod/similarity.py' 2021-07-12T12:51:46,281 adding 'molmod/symmetry.py' 2021-07-12T12:51:46,283 adding 'molmod/toyff.py' 2021-07-12T12:51:46,285 adding 'molmod/transformations.py' 2021-07-12T12:51:46,287 adding 'molmod/unit_cells.c' 2021-07-12T12:51:46,288 adding 'molmod/unit_cells.h' 2021-07-12T12:51:46,290 adding 'molmod/unit_cells.pxd' 2021-07-12T12:51:46,292 adding 'molmod/unit_cells.py' 2021-07-12T12:51:46,294 adding 'molmod/units.py' 2021-07-12T12:51:46,296 adding 'molmod/utils.py' 2021-07-12T12:51:46,298 adding 'molmod/vectors.py' 2021-07-12T12:51:46,299 adding 'molmod/version.py' 2021-07-12T12:51:46,300 adding 'molmod/zmatrix.py' 2021-07-12T12:51:46,303 adding 'molmod/data/bonds.csv' 2021-07-12T12:51:46,305 adding 'molmod/data/bonds.ods' 2021-07-12T12:51:46,388 adding 'molmod/data/mass.mas03' 2021-07-12T12:51:46,471 adding 'molmod/data/nubtab03.asc' 2021-07-12T12:51:46,477 adding 'molmod/data/periodic.csv' 2021-07-12T12:51:46,480 adding 'molmod/data/periodic.ods' 2021-07-12T12:51:46,496 adding 'molmod/data/toyff_angles.txt' 2021-07-12T12:51:46,503 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-12T12:51:46,637 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-12T12:51:46,642 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-12T12:51:46,644 adding 'molmod/data/test/5ringOH.xyz' 2021-07-12T12:51:46,645 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-12T12:51:46,889 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-12T12:51:46,898 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-12T12:51:46,899 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-12T12:51:46,901 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-12T12:51:46,902 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-12T12:51:46,903 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-12T12:51:46,905 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-12T12:51:46,907 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-12T12:51:46,907 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-12T12:51:46,909 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-12T12:51:46,910 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-12T12:51:46,911 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-12T12:51:46,914 adding 'molmod/data/test/alanine.cube' 2021-07-12T12:51:46,916 adding 'molmod/data/test/argon.xyz' 2021-07-12T12:51:46,992 adding 'molmod/data/test/bartek.atrj' 2021-07-12T12:51:46,996 adding 'molmod/data/test/benzene.xyz' 2021-07-12T12:51:46,997 adding 'molmod/data/test/butane.xyz' 2021-07-12T12:51:46,999 adding 'molmod/data/test/caplayer.cml' 2021-07-12T12:51:47,065 adding 'molmod/data/test/crystal_api.out' 2021-07-12T12:51:47,070 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-12T12:51:47,071 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-12T12:51:47,072 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-12T12:51:47,074 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-12T12:51:47,079 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-12T12:51:47,080 adding 'molmod/data/test/dopamine.xyz' 2021-07-12T12:51:47,081 adding 'molmod/data/test/ethane.xyz' 2021-07-12T12:51:47,082 adding 'molmod/data/test/ethene.xyz' 2021-07-12T12:51:47,083 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-12T12:51:47,085 adding 'molmod/data/test/example.sdf' 2021-07-12T12:51:47,086 adding 'molmod/data/test/formol.xyz' 2021-07-12T12:51:47,087 adding 'molmod/data/test/funny.xyz' 2021-07-12T12:51:47,088 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-12T12:51:47,119 adding 'molmod/data/test/il2.pdb' 2021-07-12T12:51:47,123 adding 'molmod/data/test/lammps_dump.txt' 2021-07-12T12:51:47,124 adding 'molmod/data/test/lau.xyz' 2021-07-12T12:51:47,125 adding 'molmod/data/test/octane.xyz' 2021-07-12T12:51:47,126 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-12T12:51:47,128 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-12T12:51:47,129 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-12T12:51:47,131 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-12T12:51:47,132 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-12T12:51:47,133 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-12T12:51:47,135 adding 'molmod/data/test/pentapeptide.psf' 2021-07-12T12:51:47,137 adding 'molmod/data/test/precursor.xyz' 2021-07-12T12:51:47,138 adding 'molmod/data/test/probes.xyz' 2021-07-12T12:51:47,140 adding 'molmod/data/test/tea.xyz' 2021-07-12T12:51:47,141 adding 'molmod/data/test/tetra.xyz' 2021-07-12T12:51:47,162 adding 'molmod/data/test/thf.psf' 2021-07-12T12:51:47,170 adding 'molmod/data/test/thf.xyz' 2021-07-12T12:51:47,172 adding 'molmod/data/test/thf_64.cell' 2021-07-12T12:51:47,173 adding 'molmod/data/test/thf_single.xyz' 2021-07-12T12:51:47,174 adding 'molmod/data/test/tpa.xyz' 2021-07-12T12:51:47,175 adding 'molmod/data/test/water.xyz' 2021-07-12T12:51:47,176 adding 'molmod/data/test/water2.gro' 2021-07-12T12:51:47,177 adding 'molmod/data/test/water_md.inp' 2021-07-12T12:51:47,179 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-12T12:51:47,181 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-12T12:51:47,182 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-12T12:51:47,183 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-12T12:51:47,185 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-12T12:51:47,186 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-12T12:51:47,187 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-12T12:51:47,188 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-12T12:51:47,189 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-12T12:51:47,191 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-12T12:51:47,193 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-12T12:51:47,194 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-12T12:51:47,195 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-12T12:51:47,197 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-12T12:51:47,198 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-12T12:51:47,199 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-12T12:51:47,201 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-12T12:51:47,202 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-12T12:51:47,204 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-12T12:51:47,205 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-12T12:51:47,215 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-12T12:51:47,217 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-12T12:51:47,218 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-12T12:51:47,220 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-12T12:51:47,221 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-12T12:51:47,222 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-12T12:51:47,224 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-12T12:51:47,225 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-12T12:51:47,227 adding 'molmod/io/__init__.py' 2021-07-12T12:51:47,229 adding 'molmod/io/atrj.py' 2021-07-12T12:51:47,230 adding 'molmod/io/chk.py' 2021-07-12T12:51:47,232 adding 'molmod/io/cml.py' 2021-07-12T12:51:47,234 adding 'molmod/io/common.py' 2021-07-12T12:51:47,236 adding 'molmod/io/cp2k.py' 2021-07-12T12:51:47,237 adding 'molmod/io/cpmd.py' 2021-07-12T12:51:47,239 adding 'molmod/io/crystal.py' 2021-07-12T12:51:47,240 adding 'molmod/io/cube.py' 2021-07-12T12:51:47,243 adding 'molmod/io/dlpoly.py' 2021-07-12T12:51:47,244 adding 'molmod/io/fchk.py' 2021-07-12T12:51:47,246 adding 'molmod/io/gamess.py' 2021-07-12T12:51:47,247 adding 'molmod/io/gromacs.py' 2021-07-12T12:51:47,249 adding 'molmod/io/lammps.py' 2021-07-12T12:51:47,251 adding 'molmod/io/number_state.py' 2021-07-12T12:51:47,253 adding 'molmod/io/pdb.py' 2021-07-12T12:51:47,255 adding 'molmod/io/psf.py' 2021-07-12T12:51:47,256 adding 'molmod/io/sdf.py' 2021-07-12T12:51:47,258 adding 'molmod/io/xyz.py' 2021-07-12T12:51:47,260 adding 'molmod/io/test/__init__.py' 2021-07-12T12:51:47,262 adding 'molmod/io/test/test_atrj.py' 2021-07-12T12:51:47,263 adding 'molmod/io/test/test_cml.py' 2021-07-12T12:51:47,264 adding 'molmod/io/test/test_cp2k.py' 2021-07-12T12:51:47,266 adding 'molmod/io/test/test_cpmd.py' 2021-07-12T12:51:47,267 adding 'molmod/io/test/test_crystal.py' 2021-07-12T12:51:47,268 adding 'molmod/io/test/test_cube.py' 2021-07-12T12:51:47,270 adding 'molmod/io/test/test_dlpoly.py' 2021-07-12T12:51:47,271 adding 'molmod/io/test/test_fchk.py' 2021-07-12T12:51:47,272 adding 'molmod/io/test/test_gamess.py' 2021-07-12T12:51:47,274 adding 'molmod/io/test/test_gromacs.py' 2021-07-12T12:51:47,275 adding 'molmod/io/test/test_lammps.py' 2021-07-12T12:51:47,276 adding 'molmod/io/test/test_number_state.py' 2021-07-12T12:51:47,278 adding 'molmod/io/test/test_pdb.py' 2021-07-12T12:51:47,279 adding 'molmod/io/test/test_psf.py' 2021-07-12T12:51:47,280 adding 'molmod/io/test/test_sdf.py' 2021-07-12T12:51:47,282 adding 'molmod/io/test/test_xyz.py' 2021-07-12T12:51:47,284 adding 'molmod/test/__init__.py' 2021-07-12T12:51:47,285 adding 'molmod/test/common.py' 2021-07-12T12:51:47,287 adding 'molmod/test/test_binning.py' 2021-07-12T12:51:47,288 adding 'molmod/test/test_clusters.py' 2021-07-12T12:51:47,290 adding 'molmod/test/test_data.py' 2021-07-12T12:51:47,291 adding 'molmod/test/test_examples.py' 2021-07-12T12:51:47,294 adding 'molmod/test/test_graphs.py' 2021-07-12T12:51:47,296 adding 'molmod/test/test_ic.py' 2021-07-12T12:51:47,297 adding 'molmod/test/test_log.py' 2021-07-12T12:51:47,299 adding 'molmod/test/test_minimizer.py' 2021-07-12T12:51:47,302 adding 'molmod/test/test_molecular_graphs.py' 2021-07-12T12:51:47,304 adding 'molmod/test/test_molecules.py' 2021-07-12T12:51:47,306 adding 'molmod/test/test_pairff.py' 2021-07-12T12:51:47,308 adding 'molmod/test/test_quaternions.py' 2021-07-12T12:51:47,309 adding 'molmod/test/test_randomize.py' 2021-07-12T12:51:47,311 adding 'molmod/test/test_similarity.py' 2021-07-12T12:51:47,312 adding 'molmod/test/test_symmetry.py' 2021-07-12T12:51:47,314 adding 'molmod/test/test_toyff.py' 2021-07-12T12:51:47,316 adding 'molmod/test/test_transformations.py' 2021-07-12T12:51:47,319 adding 'molmod/test/test_unit_cells.py' 2021-07-12T12:51:47,320 adding 'molmod/test/test_units.py' 2021-07-12T12:51:47,321 adding 'molmod/test/test_utils.py' 2021-07-12T12:51:47,323 adding 'molmod/test/test_vectors.py' 2021-07-12T12:51:47,324 adding 'molmod/test/test_zmatrix.py' 2021-07-12T12:51:47,332 adding 'molmod-1.4.1.dist-info/LICENSE.txt' 2021-07-12T12:51:47,333 adding 'molmod-1.4.1.dist-info/METADATA' 2021-07-12T12:51:47,334 adding 'molmod-1.4.1.dist-info/WHEEL' 2021-07-12T12:51:47,335 adding 'molmod-1.4.1.dist-info/top_level.txt' 2021-07-12T12:51:47,338 adding 'molmod-1.4.1.dist-info/RECORD' 2021-07-12T12:51:47,375 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:51:47,804 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-12T12:51:47,831 Created wheel for molmod: filename=molmod-1.4.1-cp39-cp39-linux_armv7l.whl size=1953739 sha256=bbd8feed144952e1cd8b1b94792b77ad2b9811a4ea61531fb89024ef9f6c9516 2021-07-12T12:51:47,831 Stored in directory: /tmp/pip-ephem-wheel-cache-1r68jb6o/wheels/28/73/60/b25d06ea143c8d0daa7f59bee34a9c0c2e0bfe46923a6cc22c 2021-07-12T12:51:47,849 Successfully built molmod 2021-07-12T12:51:47,916 Removed build tracker: '/tmp/pip-req-tracker-3h885d7q'