2021-07-12T13:30:07,502 Created temporary directory: /tmp/pip-ephem-wheel-cache-zuah3myu 2021-07-12T13:30:07,505 Created temporary directory: /tmp/pip-req-tracker-e0xyodd2 2021-07-12T13:30:07,505 Initialized build tracking at /tmp/pip-req-tracker-e0xyodd2 2021-07-12T13:30:07,505 Created build tracker: /tmp/pip-req-tracker-e0xyodd2 2021-07-12T13:30:07,505 Entered build tracker: /tmp/pip-req-tracker-e0xyodd2 2021-07-12T13:30:07,506 Created temporary directory: /tmp/pip-wheel-reykg9gl 2021-07-12T13:30:07,536 1 location(s) to search for versions of molmod: 2021-07-12T13:30:07,536 * https://pypi.org/simple/molmod/ 2021-07-12T13:30:07,536 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-12T13:30:07,537 Getting page https://pypi.org/simple/molmod/ 2021-07-12T13:30:07,538 Found index url https://pypi.org/simple 2021-07-12T13:30:07,632 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-12T13:30:07,632 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-12T13:30:07,633 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-12T13:30:07,633 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-12T13:30:07,633 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-12T13:30:07,633 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-12T13:30:07,634 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-12T13:30:07,634 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-12T13:30:07,634 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-12T13:30:07,635 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-12T13:30:07,635 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-12T13:30:07,635 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-12T13:30:07,636 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-12T13:30:07,636 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-12T13:30:07,636 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-12T13:30:07,637 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-12T13:30:07,637 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-12T13:30:07,658 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-12T13:30:07,677 Collecting molmod==1.4.2 2021-07-12T13:30:07,678 Created temporary directory: /tmp/pip-unpack-6cbz1z40 2021-07-12T13:30:08,766 Downloading molmod-1.4.2.tar.gz (1.7 MB) 2021-07-12T13:30:09,932 Added molmod==1.4.2 from https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd to build tracker '/tmp/pip-req-tracker-e0xyodd2' 2021-07-12T13:30:09,933 Running setup.py (path:/tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/setup.py) egg_info for package molmod 2021-07-12T13:30:09,934 Created temporary directory: /tmp/pip-pip-egg-info-63pmjpqj 2021-07-12T13:30:09,934 Running command python setup.py egg_info 2021-07-12T13:30:11,377 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T13:30:11,584 Trying to get the version from git describe 2021-07-12T13:30:11,585 Trying to get the version from {} /tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/molmod/version.py 2021-07-12T13:30:11,585 Version according to /tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/molmod/version.py: 1.4.2 2021-07-12T13:30:11,585 running egg_info 2021-07-12T13:30:11,587 creating /tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info 2021-07-12T13:30:11,588 writing /tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/PKG-INFO 2021-07-12T13:30:11,591 writing dependency_links to /tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/dependency_links.txt 2021-07-12T13:30:11,592 writing requirements to /tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/requires.txt 2021-07-12T13:30:11,593 writing top-level names to /tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/top_level.txt 2021-07-12T13:30:11,595 writing manifest file '/tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/SOURCES.txt' 2021-07-12T13:30:11,777 reading manifest file '/tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/SOURCES.txt' 2021-07-12T13:30:11,779 reading manifest template 'MANIFEST.in' 2021-07-12T13:30:12,123 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T13:30:12,184 adding license file 'LICENSE.txt' 2021-07-12T13:30:12,196 writing manifest file '/tmp/pip-pip-egg-info-63pmjpqj/molmod.egg-info/SOURCES.txt' 2021-07-12T13:30:12,319 Source in /tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178 has version 1.4.2, which satisfies requirement molmod==1.4.2 from https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd 2021-07-12T13:30:12,320 Removed molmod==1.4.2 from https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd from build tracker '/tmp/pip-req-tracker-e0xyodd2' 2021-07-12T13:30:12,324 Created temporary directory: /tmp/pip-unpack-zpkvhtpc 2021-07-12T13:30:12,324 Building wheels for collected packages: molmod 2021-07-12T13:30:12,328 Created temporary directory: /tmp/pip-wheel-v6cslnso 2021-07-12T13:30:12,328 Building wheel for molmod (setup.py): started 2021-07-12T13:30:12,329 Destination directory: /tmp/pip-wheel-v6cslnso 2021-07-12T13:30:12,329 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v6cslnso 2021-07-12T13:30:13,736 Trying to get the version from git describe 2021-07-12T13:30:13,746 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T13:30:13,747 Trying to get the version from {} /tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/molmod/version.py 2021-07-12T13:30:13,748 Version according to /tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/molmod/version.py: 1.4.2 2021-07-12T13:30:13,974 running bdist_wheel 2021-07-12T13:30:13,980 running build 2021-07-12T13:30:13,980 running build_py 2021-07-12T13:30:14,115 creating build 2021-07-12T13:30:14,115 creating build/lib.linux-armv7l-3.9 2021-07-12T13:30:14,116 creating build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,117 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,120 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,122 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,126 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,127 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,130 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,132 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,134 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,137 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,140 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,142 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,144 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,146 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,151 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,154 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,156 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,158 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,162 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,164 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,167 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,170 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,173 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,175 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,178 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,181 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,184 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,187 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,188 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,190 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,193 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,195 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,197 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,200 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,203 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,205 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,207 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,209 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,211 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,213 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,216 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,218 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,220 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,222 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,224 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,226 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,228 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,230 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,233 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,235 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,237 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,239 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T13:30:14,243 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,243 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,245 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,248 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,250 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,252 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,254 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,257 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,259 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,262 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,264 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,267 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,269 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,271 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,273 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,275 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,279 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,281 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,283 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,286 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T13:30:14,289 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,290 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,292 copying molmod/io/test/test_chk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,294 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,296 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,298 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,300 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,302 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,304 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,306 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,308 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,310 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,312 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,314 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,316 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,318 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,319 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,321 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,323 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T13:30:14,325 running egg_info 2021-07-12T13:30:14,365 writing molmod.egg-info/PKG-INFO 2021-07-12T13:30:14,367 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-12T13:30:14,368 writing requirements to molmod.egg-info/requires.txt 2021-07-12T13:30:14,369 writing top-level names to molmod.egg-info/top_level.txt 2021-07-12T13:30:14,411 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T13:30:14,420 reading manifest template 'MANIFEST.in' 2021-07-12T13:30:14,763 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T13:30:14,816 adding license file 'LICENSE.txt' 2021-07-12T13:30:14,830 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T13:30:14,846 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,848 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,851 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,853 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,855 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,857 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,859 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,861 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,863 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,865 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,867 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,869 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,871 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,873 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,875 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,878 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,880 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,882 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T13:30:14,885 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,886 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,888 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,891 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,904 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,919 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,921 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,924 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T13:30:14,928 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,929 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,933 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,950 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,953 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,956 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,958 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,984 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,986 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,989 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,991 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,994 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:14,997 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,000 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,002 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,005 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,008 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,010 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,013 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,016 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,019 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,031 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,035 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,037 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,040 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,053 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,056 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,059 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,062 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,065 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,069 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,071 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,074 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,077 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,080 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,083 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,086 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,088 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,091 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,099 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,102 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,105 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,108 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,110 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,113 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,116 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,118 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,121 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,124 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,127 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,131 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,133 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,136 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,139 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,146 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,150 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,153 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,156 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,159 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,161 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,164 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,167 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T13:30:15,169 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-12T13:30:15,170 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T13:30:15,172 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T13:30:15,175 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T13:30:15,177 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T13:30:15,180 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,181 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,184 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,186 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,189 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,191 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,194 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T13:30:15,197 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,198 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,200 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,203 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,205 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,208 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,210 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T13:30:15,213 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,214 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,217 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,219 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,222 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,225 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,229 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,232 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T13:30:15,235 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T13:30:15,236 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T13:30:15,239 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T13:30:15,241 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T13:30:15,244 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T13:30:15,249 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T13:30:15,259 running build_ext 2021-07-12T13:30:15,265 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-12T13:30:15,879 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-reykg9gl/molmod_c8a907fc25f748ab8b4557e41cfc1178/molmod/ext.pyx 2021-07-12T13:30:15,880 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T13:30:23,278 building 'molmod.ext' extension 2021-07-12T13:30:23,279 creating build/temp.linux-armv7l-3.9 2021-07-12T13:30:23,279 creating build/temp.linux-armv7l-3.9/molmod 2021-07-12T13:30:23,280 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-12T13:30:23,514 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-12T13:30:23,903 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T13:30:23,903 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T13:30:23,903 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T13:30:23,903 from molmod/ext.c:612: 2021-07-12T13:30:23,903 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T13:30:23,904 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T13:30:23,904 | ^~~~~~~ 2021-07-12T13:30:23,985 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-12T13:30:23,987 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:23,987 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T13:30:23,987 | ^~ 2021-07-12T13:30:23,988 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:23,989 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T13:30:23,989 | ^~ 2021-07-12T13:30:23,991 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:23,991 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T13:30:23,991 | ^~ 2021-07-12T13:30:23,993 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:23,993 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T13:30:23,993 | ^~ 2021-07-12T13:30:24,030 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-12T13:30:24,032 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,032 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T13:30:24,033 | ^~ 2021-07-12T13:30:24,035 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,035 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T13:30:24,035 | ^~ 2021-07-12T13:30:24,037 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,038 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T13:30:24,038 | ^~ 2021-07-12T13:30:24,083 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-12T13:30:24,086 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,086 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T13:30:24,086 | ^~ 2021-07-12T13:30:24,134 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-12T13:30:24,137 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,137 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T13:30:24,137 | ^~ 2021-07-12T13:30:24,186 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-12T13:30:24,189 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,189 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-12T13:30:24,189 | ^~ 2021-07-12T13:30:24,249 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-12T13:30:24,253 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T13:30:24,253 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-12T13:30:24,253 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:30:24,254 In file included from molmod/ext.c:623: 2021-07-12T13:30:24,254 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-12T13:30:24,254 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-12T13:30:24,254 | ~~~~~~^~~~~~ 2021-07-12T13:30:24,256 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-12T13:30:24,260 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,260 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-12T13:30:24,260 | ^~ 2021-07-12T13:30:24,275 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T13:30:24,276 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-12T13:30:24,276 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:30:24,276 In file included from molmod/ext.c:623: 2021-07-12T13:30:24,276 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-12T13:30:24,276 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-12T13:30:24,276 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-12T13:30:24,284 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-12T13:30:24,288 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,288 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-12T13:30:24,288 | ^~ 2021-07-12T13:30:24,293 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T13:30:24,293 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-12T13:30:24,293 | ^~ 2021-07-12T13:30:40,390 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-12T13:30:40,759 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-12T13:30:40,899 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-12T13:30:41,070 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-12T13:30:41,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-12T13:30:41,672 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T13:30:41,882 installing to build/bdist.linux-armv7l/wheel 2021-07-12T13:30:41,883 running install 2021-07-12T13:30:41,884 running install_lib 2021-07-12T13:30:41,889 creating build/bdist.linux-armv7l 2021-07-12T13:30:41,890 creating build/bdist.linux-armv7l/wheel 2021-07-12T13:30:41,892 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:41,893 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:41,897 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:41,900 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:41,905 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:41,909 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,911 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,913 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,917 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,921 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,924 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,928 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,932 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,936 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,940 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,944 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,948 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,952 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:41,957 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,959 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,962 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_chk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,966 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,969 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,972 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,977 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,979 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,984 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,989 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,993 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:41,997 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,000 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,004 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,007 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,010 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,013 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,016 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,019 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T13:30:42,022 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,026 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,029 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,032 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,036 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,042 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,048 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T13:30:42,053 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-12T13:30:42,055 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,057 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,060 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,063 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,066 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,069 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,072 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T13:30:42,076 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,077 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,081 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,083 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,086 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,089 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,091 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,095 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T13:30:42,100 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T13:30:42,101 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T13:30:42,103 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T13:30:42,107 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T13:30:42,110 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T13:30:42,111 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T13:30:42,114 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T13:30:42,117 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T13:30:42,119 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T13:30:42,122 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T13:30:42,125 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,126 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,129 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,131 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,134 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,137 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,140 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T13:30:42,142 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,144 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,148 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,151 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,155 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,158 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,161 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,164 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,167 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,170 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,173 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,176 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,178 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,181 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,186 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,188 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,190 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,195 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,196 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,198 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,202 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,205 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,208 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,211 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,215 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,217 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,221 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,224 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,228 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,231 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,234 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,237 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,240 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,242 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,245 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,247 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,250 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,252 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,255 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,257 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,261 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,265 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T13:30:42,267 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,271 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,274 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,276 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,279 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,281 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,285 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,287 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,290 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,292 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,295 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,298 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,301 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,303 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,307 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,308 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,312 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,316 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,321 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,323 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,342 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,343 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,345 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,348 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,351 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,364 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,367 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,369 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,372 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,374 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,377 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,381 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,383 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,386 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,398 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,401 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,404 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,408 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,411 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,415 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,417 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,420 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,424 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,428 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,432 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,450 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,454 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,457 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,460 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,464 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,467 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,471 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,474 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,477 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,480 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,488 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,491 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,494 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,497 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,500 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,504 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,534 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,538 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,541 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,544 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,547 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,555 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,558 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,561 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,563 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,566 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,568 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,571 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,574 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,577 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,580 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,583 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,586 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,589 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,591 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,600 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,602 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T13:30:42,605 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,620 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T13:30:42,623 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,626 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,628 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,632 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,635 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,638 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,671 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,675 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,678 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,680 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T13:30:42,683 running install_egg_info 2021-07-12T13:30:42,689 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.2-py3.9.egg-info 2021-07-12T13:30:42,708 running install_scripts 2021-07-12T13:30:42,758 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T13:30:42,766 creating build/bdist.linux-armv7l/wheel/molmod-1.4.2.dist-info/WHEEL 2021-07-12T13:30:42,770 creating '/tmp/pip-wheel-v6cslnso/molmod-1.4.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T13:30:42,774 adding 'molmod/__init__.py' 2021-07-12T13:30:42,777 adding 'molmod/binning.py' 2021-07-12T13:30:42,779 adding 'molmod/bonds.py' 2021-07-12T13:30:42,781 adding 'molmod/clusters.py' 2021-07-12T13:30:42,783 adding 'molmod/common.c' 2021-07-12T13:30:42,785 adding 'molmod/common.h' 2021-07-12T13:30:42,787 adding 'molmod/constants.py' 2021-07-12T13:30:43,012 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T13:30:43,023 adding 'molmod/ext.pyx' 2021-07-12T13:30:43,025 adding 'molmod/ff.c' 2021-07-12T13:30:43,026 adding 'molmod/ff.h' 2021-07-12T13:30:43,028 adding 'molmod/ff.pxd' 2021-07-12T13:30:43,030 adding 'molmod/graphs.c' 2021-07-12T13:30:43,031 adding 'molmod/graphs.h' 2021-07-12T13:30:43,033 adding 'molmod/graphs.pxd' 2021-07-12T13:30:43,042 adding 'molmod/graphs.py' 2021-07-12T13:30:43,047 adding 'molmod/ic.py' 2021-07-12T13:30:43,049 adding 'molmod/isotopes.py' 2021-07-12T13:30:43,052 adding 'molmod/log.py' 2021-07-12T13:30:43,060 adding 'molmod/minimizer.py' 2021-07-12T13:30:43,065 adding 'molmod/molecular_graphs.py' 2021-07-12T13:30:43,067 adding 'molmod/molecules.c' 2021-07-12T13:30:43,068 adding 'molmod/molecules.h' 2021-07-12T13:30:43,070 adding 'molmod/molecules.pxd' 2021-07-12T13:30:43,073 adding 'molmod/molecules.py' 2021-07-12T13:30:43,075 adding 'molmod/pairff.py' 2021-07-12T13:30:43,077 adding 'molmod/periodic.py' 2021-07-12T13:30:43,079 adding 'molmod/quaternions.py' 2021-07-12T13:30:43,082 adding 'molmod/randomize.py' 2021-07-12T13:30:43,084 adding 'molmod/similarity.c' 2021-07-12T13:30:43,086 adding 'molmod/similarity.h' 2021-07-12T13:30:43,087 adding 'molmod/similarity.pxd' 2021-07-12T13:30:43,089 adding 'molmod/similarity.py' 2021-07-12T13:30:43,091 adding 'molmod/symmetry.py' 2021-07-12T13:30:43,093 adding 'molmod/toyff.py' 2021-07-12T13:30:43,096 adding 'molmod/transformations.py' 2021-07-12T13:30:43,098 adding 'molmod/unit_cells.c' 2021-07-12T13:30:43,100 adding 'molmod/unit_cells.h' 2021-07-12T13:30:43,101 adding 'molmod/unit_cells.pxd' 2021-07-12T13:30:43,104 adding 'molmod/unit_cells.py' 2021-07-12T13:30:43,106 adding 'molmod/units.py' 2021-07-12T13:30:43,109 adding 'molmod/utils.py' 2021-07-12T13:30:43,111 adding 'molmod/vectors.py' 2021-07-12T13:30:43,113 adding 'molmod/version.py' 2021-07-12T13:30:43,115 adding 'molmod/zmatrix.py' 2021-07-12T13:30:43,118 adding 'molmod/data/bonds.csv' 2021-07-12T13:30:43,121 adding 'molmod/data/bonds.ods' 2021-07-12T13:30:43,205 adding 'molmod/data/mass.mas03' 2021-07-12T13:30:43,290 adding 'molmod/data/nubtab03.asc' 2021-07-12T13:30:43,297 adding 'molmod/data/periodic.csv' 2021-07-12T13:30:43,300 adding 'molmod/data/periodic.ods' 2021-07-12T13:30:43,315 adding 'molmod/data/toyff_angles.txt' 2021-07-12T13:30:43,323 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-12T13:30:43,456 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-12T13:30:43,463 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-12T13:30:43,465 adding 'molmod/data/test/5ringOH.xyz' 2021-07-12T13:30:43,466 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-12T13:30:43,713 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-12T13:30:43,722 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-12T13:30:43,724 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-12T13:30:43,726 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-12T13:30:43,727 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-12T13:30:43,729 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-12T13:30:43,731 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-12T13:30:43,732 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-12T13:30:43,734 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-12T13:30:43,736 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-12T13:30:43,738 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-12T13:30:43,739 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-12T13:30:43,743 adding 'molmod/data/test/alanine.cube' 2021-07-12T13:30:43,745 adding 'molmod/data/test/argon.xyz' 2021-07-12T13:30:43,822 adding 'molmod/data/test/bartek.atrj' 2021-07-12T13:30:43,826 adding 'molmod/data/test/benzene.xyz' 2021-07-12T13:30:43,827 adding 'molmod/data/test/butane.xyz' 2021-07-12T13:30:43,830 adding 'molmod/data/test/caplayer.cml' 2021-07-12T13:30:43,896 adding 'molmod/data/test/crystal_api.out' 2021-07-12T13:30:43,901 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-12T13:30:43,903 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-12T13:30:43,904 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-12T13:30:43,906 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-12T13:30:43,911 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-12T13:30:43,913 adding 'molmod/data/test/dopamine.xyz' 2021-07-12T13:30:43,915 adding 'molmod/data/test/ethane.xyz' 2021-07-12T13:30:43,916 adding 'molmod/data/test/ethene.xyz' 2021-07-12T13:30:43,918 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-12T13:30:43,920 adding 'molmod/data/test/example.sdf' 2021-07-12T13:30:43,922 adding 'molmod/data/test/formol.xyz' 2021-07-12T13:30:43,923 adding 'molmod/data/test/funny.xyz' 2021-07-12T13:30:43,925 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-12T13:30:43,955 adding 'molmod/data/test/il2.pdb' 2021-07-12T13:30:43,960 adding 'molmod/data/test/lammps_dump.txt' 2021-07-12T13:30:43,962 adding 'molmod/data/test/lau.xyz' 2021-07-12T13:30:43,963 adding 'molmod/data/test/octane.xyz' 2021-07-12T13:30:43,965 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-12T13:30:43,967 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-12T13:30:43,968 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-12T13:30:43,970 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-12T13:30:43,972 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-12T13:30:43,974 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-12T13:30:43,976 adding 'molmod/data/test/pentapeptide.psf' 2021-07-12T13:30:43,978 adding 'molmod/data/test/precursor.xyz' 2021-07-12T13:30:43,980 adding 'molmod/data/test/probes.xyz' 2021-07-12T13:30:43,981 adding 'molmod/data/test/tea.xyz' 2021-07-12T13:30:43,983 adding 'molmod/data/test/tetra.xyz' 2021-07-12T13:30:44,006 adding 'molmod/data/test/thf.psf' 2021-07-12T13:30:44,014 adding 'molmod/data/test/thf.xyz' 2021-07-12T13:30:44,016 adding 'molmod/data/test/thf_64.cell' 2021-07-12T13:30:44,017 adding 'molmod/data/test/thf_single.xyz' 2021-07-12T13:30:44,019 adding 'molmod/data/test/tpa.xyz' 2021-07-12T13:30:44,020 adding 'molmod/data/test/water.xyz' 2021-07-12T13:30:44,022 adding 'molmod/data/test/water2.gro' 2021-07-12T13:30:44,023 adding 'molmod/data/test/water_md.inp' 2021-07-12T13:30:44,025 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-12T13:30:44,027 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-12T13:30:44,029 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-12T13:30:44,031 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-12T13:30:44,033 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-12T13:30:44,034 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-12T13:30:44,036 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-12T13:30:44,037 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-12T13:30:44,039 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-12T13:30:44,041 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-12T13:30:44,044 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-12T13:30:44,045 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-12T13:30:44,047 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-12T13:30:44,048 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-12T13:30:44,050 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-12T13:30:44,052 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-12T13:30:44,054 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-12T13:30:44,056 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-12T13:30:44,058 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-12T13:30:44,060 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-12T13:30:44,071 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-12T13:30:44,073 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-12T13:30:44,075 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-12T13:30:44,077 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-12T13:30:44,079 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-12T13:30:44,081 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-12T13:30:44,082 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-12T13:30:44,084 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-12T13:30:44,087 adding 'molmod/io/__init__.py' 2021-07-12T13:30:44,089 adding 'molmod/io/atrj.py' 2021-07-12T13:30:44,091 adding 'molmod/io/chk.py' 2021-07-12T13:30:44,093 adding 'molmod/io/cml.py' 2021-07-12T13:30:44,095 adding 'molmod/io/common.py' 2021-07-12T13:30:44,098 adding 'molmod/io/cp2k.py' 2021-07-12T13:30:44,100 adding 'molmod/io/cpmd.py' 2021-07-12T13:30:44,102 adding 'molmod/io/crystal.py' 2021-07-12T13:30:44,104 adding 'molmod/io/cube.py' 2021-07-12T13:30:44,107 adding 'molmod/io/dlpoly.py' 2021-07-12T13:30:44,110 adding 'molmod/io/fchk.py' 2021-07-12T13:30:44,112 adding 'molmod/io/gamess.py' 2021-07-12T13:30:44,114 adding 'molmod/io/gromacs.py' 2021-07-12T13:30:44,116 adding 'molmod/io/lammps.py' 2021-07-12T13:30:44,118 adding 'molmod/io/number_state.py' 2021-07-12T13:30:44,120 adding 'molmod/io/pdb.py' 2021-07-12T13:30:44,122 adding 'molmod/io/psf.py' 2021-07-12T13:30:44,124 adding 'molmod/io/sdf.py' 2021-07-12T13:30:44,126 adding 'molmod/io/xyz.py' 2021-07-12T13:30:44,128 adding 'molmod/io/test/__init__.py' 2021-07-12T13:30:44,130 adding 'molmod/io/test/test_atrj.py' 2021-07-12T13:30:44,131 adding 'molmod/io/test/test_chk.py' 2021-07-12T13:30:44,132 adding 'molmod/io/test/test_cml.py' 2021-07-12T13:30:44,134 adding 'molmod/io/test/test_cp2k.py' 2021-07-12T13:30:44,135 adding 'molmod/io/test/test_cpmd.py' 2021-07-12T13:30:44,137 adding 'molmod/io/test/test_crystal.py' 2021-07-12T13:30:44,138 adding 'molmod/io/test/test_cube.py' 2021-07-12T13:30:44,140 adding 'molmod/io/test/test_dlpoly.py' 2021-07-12T13:30:44,141 adding 'molmod/io/test/test_fchk.py' 2021-07-12T13:30:44,143 adding 'molmod/io/test/test_gamess.py' 2021-07-12T13:30:44,144 adding 'molmod/io/test/test_gromacs.py' 2021-07-12T13:30:44,146 adding 'molmod/io/test/test_lammps.py' 2021-07-12T13:30:44,148 adding 'molmod/io/test/test_number_state.py' 2021-07-12T13:30:44,149 adding 'molmod/io/test/test_pdb.py' 2021-07-12T13:30:44,151 adding 'molmod/io/test/test_psf.py' 2021-07-12T13:30:44,153 adding 'molmod/io/test/test_sdf.py' 2021-07-12T13:30:44,154 adding 'molmod/io/test/test_xyz.py' 2021-07-12T13:30:44,157 adding 'molmod/test/__init__.py' 2021-07-12T13:30:44,159 adding 'molmod/test/common.py' 2021-07-12T13:30:44,161 adding 'molmod/test/test_binning.py' 2021-07-12T13:30:44,162 adding 'molmod/test/test_clusters.py' 2021-07-12T13:30:44,164 adding 'molmod/test/test_data.py' 2021-07-12T13:30:44,165 adding 'molmod/test/test_examples.py' 2021-07-12T13:30:44,169 adding 'molmod/test/test_graphs.py' 2021-07-12T13:30:44,171 adding 'molmod/test/test_ic.py' 2021-07-12T13:30:44,173 adding 'molmod/test/test_log.py' 2021-07-12T13:30:44,175 adding 'molmod/test/test_minimizer.py' 2021-07-12T13:30:44,178 adding 'molmod/test/test_molecular_graphs.py' 2021-07-12T13:30:44,180 adding 'molmod/test/test_molecules.py' 2021-07-12T13:30:44,183 adding 'molmod/test/test_pairff.py' 2021-07-12T13:30:44,185 adding 'molmod/test/test_quaternions.py' 2021-07-12T13:30:44,187 adding 'molmod/test/test_randomize.py' 2021-07-12T13:30:44,189 adding 'molmod/test/test_similarity.py' 2021-07-12T13:30:44,190 adding 'molmod/test/test_symmetry.py' 2021-07-12T13:30:44,192 adding 'molmod/test/test_toyff.py' 2021-07-12T13:30:44,195 adding 'molmod/test/test_transformations.py' 2021-07-12T13:30:44,198 adding 'molmod/test/test_unit_cells.py' 2021-07-12T13:30:44,199 adding 'molmod/test/test_units.py' 2021-07-12T13:30:44,201 adding 'molmod/test/test_utils.py' 2021-07-12T13:30:44,202 adding 'molmod/test/test_vectors.py' 2021-07-12T13:30:44,204 adding 'molmod/test/test_zmatrix.py' 2021-07-12T13:30:44,211 adding 'molmod-1.4.2.dist-info/LICENSE.txt' 2021-07-12T13:30:44,213 adding 'molmod-1.4.2.dist-info/METADATA' 2021-07-12T13:30:44,214 adding 'molmod-1.4.2.dist-info/WHEEL' 2021-07-12T13:30:44,215 adding 'molmod-1.4.2.dist-info/top_level.txt' 2021-07-12T13:30:44,218 adding 'molmod-1.4.2.dist-info/RECORD' 2021-07-12T13:30:44,253 removing build/bdist.linux-armv7l/wheel 2021-07-12T13:30:44,724 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-12T13:30:44,752 Created wheel for molmod: filename=molmod-1.4.2-cp39-cp39-linux_armv7l.whl size=1955136 sha256=2a63c98cfa820171218e3e0fab5ce769a2bd26e3d4ddc9319878bd448e0f9d48 2021-07-12T13:30:44,753 Stored in directory: /tmp/pip-ephem-wheel-cache-zuah3myu/wheels/49/73/58/f340af14bd646cf489fcd9825045917ada68234c17746a7841 2021-07-12T13:30:44,770 Successfully built molmod 2021-07-12T13:30:44,840 Removed build tracker: '/tmp/pip-req-tracker-e0xyodd2'