2021-07-12T13:48:15,400 Created temporary directory: /tmp/pip-ephem-wheel-cache-lb0zwd28 2021-07-12T13:48:15,403 Created temporary directory: /tmp/pip-req-tracker-txmso_7f 2021-07-12T13:48:15,403 Initialized build tracking at /tmp/pip-req-tracker-txmso_7f 2021-07-12T13:48:15,403 Created build tracker: /tmp/pip-req-tracker-txmso_7f 2021-07-12T13:48:15,404 Entered build tracker: /tmp/pip-req-tracker-txmso_7f 2021-07-12T13:48:15,404 Created temporary directory: /tmp/pip-wheel-opgic2c5 2021-07-12T13:48:15,433 1 location(s) to search for versions of tredparse: 2021-07-12T13:48:15,433 * https://pypi.org/simple/tredparse/ 2021-07-12T13:48:15,434 Fetching project page and analyzing links: https://pypi.org/simple/tredparse/ 2021-07-12T13:48:15,434 Getting page https://pypi.org/simple/tredparse/ 2021-07-12T13:48:15,436 Found index url https://pypi.org/simple 2021-07-12T13:48:15,524 Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 (from https://pypi.org/simple/tredparse/), version: 0.7.5 2021-07-12T13:48:15,525 Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 (from https://pypi.org/simple/tredparse/), version: 0.7.6 2021-07-12T13:48:15,525 Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz#sha256=1aa435d1679ccc2d821e33c2a38fc626bba88178961dd2c8ab8ef761cd3846fc (from https://pypi.org/simple/tredparse/), version: 0.7.7 2021-07-12T13:48:15,525 Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/), version: 0.7.8 2021-07-12T13:48:15,526 Skipping link: not a file: https://pypi.org/simple/tredparse/ 2021-07-12T13:48:15,544 Given no hashes to check 1 links for project 'tredparse': discarding no candidates 2021-07-12T13:48:15,562 Collecting tredparse==0.7.5 2021-07-12T13:48:15,564 Created temporary directory: /tmp/pip-unpack-628f4j_z 2021-07-12T13:48:15,774 Downloading tredparse-0.7.5.tar.gz (58 kB) 2021-07-12T13:48:15,860 Added tredparse==0.7.5 from https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 to build tracker '/tmp/pip-req-tracker-txmso_7f' 2021-07-12T13:48:15,861 Running setup.py (path:/tmp/pip-wheel-opgic2c5/tredparse_802083d9425645b1ac2eb0d2b03df526/setup.py) egg_info for package tredparse 2021-07-12T13:48:15,862 Created temporary directory: /tmp/pip-pip-egg-info-trvffxar 2021-07-12T13:48:15,862 Running command python setup.py egg_info 2021-07-12T13:48:16,971 running egg_info 2021-07-12T13:48:16,973 creating /tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info 2021-07-12T13:48:16,974 writing /tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/PKG-INFO 2021-07-12T13:48:16,977 writing dependency_links to /tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/dependency_links.txt 2021-07-12T13:48:16,979 writing requirements to /tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/requires.txt 2021-07-12T13:48:16,980 writing top-level names to /tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/top_level.txt 2021-07-12T13:48:16,982 writing manifest file '/tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/SOURCES.txt' 2021-07-12T13:48:17,338 reading manifest file '/tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/SOURCES.txt' 2021-07-12T13:48:17,340 reading manifest template 'MANIFEST.in' 2021-07-12T13:48:17,343 adding license file 'LICENSE' 2021-07-12T13:48:17,347 writing manifest file '/tmp/pip-pip-egg-info-trvffxar/tredparse.egg-info/SOURCES.txt' 2021-07-12T13:48:17,435 Source in /tmp/pip-wheel-opgic2c5/tredparse_802083d9425645b1ac2eb0d2b03df526 has version 0.7.5, which satisfies requirement tredparse==0.7.5 from https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 2021-07-12T13:48:17,436 Removed tredparse==0.7.5 from https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 from build tracker '/tmp/pip-req-tracker-txmso_7f' 2021-07-12T13:48:17,444 Created temporary directory: /tmp/pip-unpack-iwq8l3e7 2021-07-12T13:48:17,444 Building wheels for collected packages: tredparse 2021-07-12T13:48:17,448 Created temporary directory: /tmp/pip-wheel-biqgnjxb 2021-07-12T13:48:17,449 Building wheel for tredparse (setup.py): started 2021-07-12T13:48:17,449 Destination directory: /tmp/pip-wheel-biqgnjxb 2021-07-12T13:48:17,449 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-opgic2c5/tredparse_802083d9425645b1ac2eb0d2b03df526/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-opgic2c5/tredparse_802083d9425645b1ac2eb0d2b03df526/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-biqgnjxb 2021-07-12T13:48:18,587 running bdist_wheel 2021-07-12T13:48:18,750 running build 2021-07-12T13:48:18,750 running build_py 2021-07-12T13:48:18,887 creating build 2021-07-12T13:48:18,888 creating build/lib.linux-armv7l-3.9 2021-07-12T13:48:18,889 creating build/lib.linux-armv7l-3.9/ssw 2021-07-12T13:48:18,890 copying src/__init__.py -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T13:48:18,893 copying src/ssw_wrap.py -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T13:48:18,897 creating build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,898 copying tredparse/jcvi.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,902 copying tredparse/utils.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,905 copying tredparse/meta.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,907 copying tredparse/__init__.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,909 copying tredparse/bam_parser.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,912 copying tredparse/models.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T13:48:18,916 running egg_info 2021-07-12T13:48:18,932 writing tredparse.egg-info/PKG-INFO 2021-07-12T13:48:18,935 writing dependency_links to tredparse.egg-info/dependency_links.txt 2021-07-12T13:48:18,937 writing requirements to tredparse.egg-info/requires.txt 2021-07-12T13:48:18,938 writing top-level names to tredparse.egg-info/top_level.txt 2021-07-12T13:48:18,974 reading manifest file 'tredparse.egg-info/SOURCES.txt' 2021-07-12T13:48:18,978 reading manifest template 'MANIFEST.in' 2021-07-12T13:48:18,982 adding license file 'LICENSE' 2021-07-12T13:48:18,986 writing manifest file 'tredparse.egg-info/SOURCES.txt' 2021-07-12T13:48:18,990 copying src/ssw.c -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T13:48:18,995 copying src/ssw.h -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T13:48:18,999 running build_ext 2021-07-12T13:48:19,005 building 'libssw' extension 2021-07-12T13:48:19,006 creating build/temp.linux-armv7l-3.9 2021-07-12T13:48:19,007 creating build/temp.linux-armv7l-3.9/src 2021-07-12T13:48:19,008 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/ssw.c -o build/temp.linux-armv7l-3.9/src/ssw.o 2021-07-12T13:48:19,065 src/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory 2021-07-12T13:48:19,065 38 | #include 2021-07-12T13:48:19,065 | ^~~~~~~~~~~~~ 2021-07-12T13:48:19,065 compilation terminated. 2021-07-12T13:48:19,069 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T13:48:19,155 Building wheel for tredparse (setup.py): finished with status 'error' 2021-07-12T13:48:19,155 ERROR: Failed building wheel for tredparse 2021-07-12T13:48:19,156 Running setup.py clean for tredparse 2021-07-12T13:48:19,156 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-opgic2c5/tredparse_802083d9425645b1ac2eb0d2b03df526/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-opgic2c5/tredparse_802083d9425645b1ac2eb0d2b03df526/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T13:48:20,254 running clean 2021-07-12T13:48:20,256 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-12T13:48:20,258 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-12T13:48:20,264 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-12T13:48:20,265 'build/scripts-3.9' does not exist -- can't clean it 2021-07-12T13:48:20,265 removing 'build' 2021-07-12T13:48:20,323 Failed to build tredparse 2021-07-12T13:48:20,324 ERROR: Failed to build one or more wheels 2021-07-12T13:48:20,324 Exception information: 2021-07-12T13:48:20,324 Traceback (most recent call last): 2021-07-12T13:48:20,324 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T13:48:20,324 status = self.run(options, args) 2021-07-12T13:48:20,324 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T13:48:20,324 return func(self, options, args) 2021-07-12T13:48:20,324 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T13:48:20,324 raise CommandError( 2021-07-12T13:48:20,324 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T13:48:20,327 Removed build tracker: '/tmp/pip-req-tracker-txmso_7f'