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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-12T13:48:13,932 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-12T13:48:13,932 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-12T13:48:13,933 Found link 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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-12T13:48:13,934 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-12T13:48:13,934 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-12T13:48:13,934 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-12T13:48:13,935 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-12T13:48:13,935 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-12T13:48:13,935 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-12T13:48:13,935 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-12T13:48:13,936 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-12T13:48:13,936 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-12T13:48:13,936 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-12T13:48:13,962 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-12T13:48:13,982 Collecting jcvi==0.7.4 2021-07-12T13:48:13,983 Created temporary directory: /tmp/pip-unpack-52wmde8m 2021-07-12T13:48:14,738 Downloading jcvi-0.7.4.tar.gz (811 kB) 2021-07-12T13:48:15,452 Added jcvi==0.7.4 from https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 to build tracker '/tmp/pip-req-tracker-6ry0ufr7' 2021-07-12T13:48:15,453 Running setup.py (path:/tmp/pip-wheel-05a97kzf/jcvi_cc526a8835ed40ad80043ab17ed239f9/setup.py) egg_info for package jcvi 2021-07-12T13:48:15,454 Created temporary directory: /tmp/pip-pip-egg-info-shy90ilu 2021-07-12T13:48:15,454 Running command python setup.py egg_info 2021-07-12T13:48:16,765 running egg_info 2021-07-12T13:48:16,767 creating /tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info 2021-07-12T13:48:16,768 writing /tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/PKG-INFO 2021-07-12T13:48:16,771 writing dependency_links to /tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/dependency_links.txt 2021-07-12T13:48:16,773 writing requirements to /tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/requires.txt 2021-07-12T13:48:16,774 writing top-level names to /tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/top_level.txt 2021-07-12T13:48:16,776 writing manifest file '/tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/SOURCES.txt' 2021-07-12T13:48:17,145 reading manifest file '/tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/SOURCES.txt' 2021-07-12T13:48:17,147 reading manifest template 'MANIFEST.in' 2021-07-12T13:48:17,150 adding license file 'LICENSE' 2021-07-12T13:48:17,158 writing manifest file '/tmp/pip-pip-egg-info-shy90ilu/jcvi.egg-info/SOURCES.txt' 2021-07-12T13:48:17,260 Source in /tmp/pip-wheel-05a97kzf/jcvi_cc526a8835ed40ad80043ab17ed239f9 has version 0.7.4, which satisfies requirement jcvi==0.7.4 from https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 2021-07-12T13:48:17,261 Removed jcvi==0.7.4 from https://files.pythonhosted.org/packages/c4/f9/1bc024ccde1dec0e052c3c66496533aa2e12b271be82c605fa0ee50c1611/jcvi-0.7.4.tar.gz#sha256=4dfbc5bd46bbeef4a6b0da2198b522f8350aeb5fd2a368d16f7f8ba1226347b8 from build tracker '/tmp/pip-req-tracker-6ry0ufr7' 2021-07-12T13:48:17,266 Created temporary directory: /tmp/pip-unpack-kvj86nh8 2021-07-12T13:48:17,266 Building wheels for collected packages: jcvi 2021-07-12T13:48:17,270 Created temporary directory: /tmp/pip-wheel-rlkth2ri 2021-07-12T13:48:17,271 Building wheel for jcvi (setup.py): started 2021-07-12T13:48:17,271 Destination directory: /tmp/pip-wheel-rlkth2ri 2021-07-12T13:48:17,271 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-05a97kzf/jcvi_cc526a8835ed40ad80043ab17ed239f9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-05a97kzf/jcvi_cc526a8835ed40ad80043ab17ed239f9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rlkth2ri 2021-07-12T13:48:18,564 running bdist_wheel 2021-07-12T13:48:18,758 running build 2021-07-12T13:48:18,758 running build_py 2021-07-12T13:48:18,893 creating build 2021-07-12T13:48:18,893 creating build/lib.linux-armv7l-3.9 2021-07-12T13:48:18,894 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-12T13:48:18,895 copying ./__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-12T13:48:18,898 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,899 copying ./projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,902 copying ./projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,904 copying ./projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,906 copying ./projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,909 copying ./projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,912 copying ./projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,915 copying ./projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,917 copying ./projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,920 copying ./projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,922 copying ./projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,925 copying ./projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,928 copying ./projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,930 copying ./projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T13:48:18,934 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,935 copying ./variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,938 copying ./variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,940 copying ./variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,943 copying ./variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,946 copying ./variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,948 copying ./variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,952 copying ./variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,954 copying ./variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,957 copying ./variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,960 copying ./variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T13:48:18,964 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,965 copying ./assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,968 copying ./assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,971 copying ./assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,974 copying ./assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,976 copying ./assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,979 copying ./assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,982 copying ./assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,985 copying ./assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,988 copying ./assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,991 copying ./assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,994 copying ./assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,997 copying ./assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:18,999 copying ./assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,002 copying ./assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,006 copying ./assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,008 copying ./assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,009 copying ./assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,013 copying ./assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,016 copying ./assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,018 copying ./assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,020 copying ./assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,024 copying ./assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,027 copying ./assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,029 copying ./assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,032 copying ./assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,036 copying ./assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,038 copying ./assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T13:48:19,043 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,044 copying ./apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,046 copying ./apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,049 copying ./apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,051 copying ./apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,054 copying ./apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,057 copying ./apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,059 copying ./apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,062 copying ./apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,065 copying ./apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,068 copying ./apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,071 copying ./apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,074 copying ./apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,077 copying ./apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,079 copying ./apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,081 copying ./apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,083 copying ./apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,085 copying ./apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,088 copying ./apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,089 copying ./apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,091 copying ./apps/console.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,094 copying ./apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,095 copying ./apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,098 copying ./apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,100 copying ./apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,103 copying ./apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,105 copying ./apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,108 copying ./apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,110 copying ./apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T13:48:19,113 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,114 copying ./algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,117 copying ./algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,119 copying ./algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,121 copying ./algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,123 copying ./algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,125 copying ./algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,128 copying ./algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,130 copying ./algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,132 copying ./algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,134 copying ./algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,137 copying ./algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,139 copying ./algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T13:48:19,144 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,144 copying ./graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,147 copying ./graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,150 copying ./graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,153 copying ./graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,156 copying ./graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,159 copying ./graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,160 copying ./graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,162 copying ./graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,164 copying ./graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,167 copying ./graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,170 copying ./graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,173 copying ./graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,174 copying ./graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,177 copying ./graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,179 copying ./graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,182 copying ./graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,185 copying ./graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,187 copying ./graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,189 copying ./graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,192 copying ./graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,195 copying ./graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,197 copying ./graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T13:48:19,201 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,202 copying ./annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,206 copying ./annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,208 copying ./annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,211 copying ./annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,214 copying ./annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,217 copying ./annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,220 copying ./annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,223 copying ./annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,225 copying ./annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,227 copying ./annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,233 copying ./annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,235 copying ./annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T13:48:19,239 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,240 copying ./utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,242 copying ./utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,245 copying ./utils/natsort.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,247 copying ./utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,250 copying ./utils/counter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,252 copying ./utils/brewer2mpl.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,255 copying ./utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,258 copying ./utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,259 copying ./utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,262 copying ./utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,264 copying ./utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,266 copying ./utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,269 copying ./utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,271 copying ./utils/progressbar.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,274 copying ./utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,277 copying ./utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,279 copying ./utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T13:48:19,283 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,284 copying ./formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,288 copying ./formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,290 copying ./formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,292 copying ./formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,294 copying ./formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,297 copying ./formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,300 copying ./formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,305 copying ./formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,307 copying ./formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,309 copying ./formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,312 copying ./formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,314 copying ./formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,317 copying ./formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,324 copying ./formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,326 copying ./formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,328 copying ./formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,331 copying ./formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,333 copying ./formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,334 copying ./formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,336 copying ./formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,340 copying ./formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,343 copying ./formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,345 copying ./formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,347 copying ./formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,350 copying ./formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,355 copying ./formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,358 copying ./formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,360 copying ./formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T13:48:19,364 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,365 copying ./compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,368 copying ./compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,370 copying ./compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,373 copying ./compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,376 copying ./compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,378 copying ./compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,381 copying ./compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,383 copying ./compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,385 copying ./compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,389 copying ./compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T13:48:19,393 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,394 copying ./utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,396 running egg_info 2021-07-12T13:48:19,412 writing jcvi.egg-info/PKG-INFO 2021-07-12T13:48:19,415 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-12T13:48:19,416 writing requirements to jcvi.egg-info/requires.txt 2021-07-12T13:48:19,418 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-12T13:48:19,440 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-12T13:48:19,446 reading manifest template 'MANIFEST.in' 2021-07-12T13:48:19,449 adding license file 'LICENSE' 2021-07-12T13:48:19,460 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-12T13:48:19,467 copying ./utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,469 copying ./utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,472 copying ./utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,474 copying ./utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,478 copying ./utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,481 copying ./utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,486 copying ./utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,489 copying ./utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,493 copying ./utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,496 copying ./utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,498 copying ./utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,501 copying ./utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,505 copying ./utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T13:48:19,523 running build_ext 2021-07-12T13:48:19,528 building 'jcvi.assembly.chic' extension 2021-07-12T13:48:19,528 creating build/temp.linux-armv7l-3.9 2021-07-12T13:48:19,529 creating build/temp.linux-armv7l-3.9/assembly 2021-07-12T13:48:19,529 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c assembly/chic.c -o build/temp.linux-armv7l-3.9/assembly/chic.o -O3 2021-07-12T13:48:19,924 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T13:48:19,924 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T13:48:19,925 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T13:48:19,925 from assembly/chic.c:475: 2021-07-12T13:48:19,925 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T13:48:19,925 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T13:48:19,925 | ^~~~~~~ 2021-07-12T13:48:20,057 assembly/chic.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T13:48:20,060 assembly/chic.c:7276:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,061 7276 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,061 | ^ 2021-07-12T13:48:20,061 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,061 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,061 from assembly/chic.c:4: 2021-07-12T13:48:20,062 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,062 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,062 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,065 assembly/chic.c:7276:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,065 7276 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,066 | ^ 2021-07-12T13:48:20,066 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,066 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,066 from assembly/chic.c:4: 2021-07-12T13:48:20,066 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T13:48:20,066 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T13:48:20,066 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,069 assembly/chic.c:7276:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,069 7276 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,069 | ^ 2021-07-12T13:48:20,070 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,070 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,070 from assembly/chic.c:4: 2021-07-12T13:48:20,070 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,070 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,070 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,073 assembly/chic.c:7276:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,073 7276 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,074 | ^ 2021-07-12T13:48:20,074 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,074 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,074 from assembly/chic.c:4: 2021-07-12T13:48:20,074 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,074 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,074 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,077 assembly/chic.c:7276:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,077 7276 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,078 | ^ 2021-07-12T13:48:20,078 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,078 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,078 from assembly/chic.c:4: 2021-07-12T13:48:20,078 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T13:48:20,078 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T13:48:20,078 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,082 assembly/chic.c:7276:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,083 7276 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,083 | ^ 2021-07-12T13:48:20,083 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,083 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,083 from assembly/chic.c:4: 2021-07-12T13:48:20,083 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,083 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,084 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,088 assembly/chic.c:7292:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,088 7292 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,088 | ^ 2021-07-12T13:48:20,088 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,088 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,088 from assembly/chic.c:4: 2021-07-12T13:48:20,088 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,089 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,089 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,092 assembly/chic.c:7292:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,092 7292 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,092 | ^ 2021-07-12T13:48:20,092 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,092 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,092 from assembly/chic.c:4: 2021-07-12T13:48:20,092 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T13:48:20,092 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T13:48:20,093 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,096 assembly/chic.c:7292:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,096 7292 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,096 | ^ 2021-07-12T13:48:20,096 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,096 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,096 from assembly/chic.c:4: 2021-07-12T13:48:20,096 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,096 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,097 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,100 assembly/chic.c:7292:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,100 7292 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,100 | ^ 2021-07-12T13:48:20,100 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,100 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,100 from assembly/chic.c:4: 2021-07-12T13:48:20,100 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,100 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,104 assembly/chic.c:7292:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,104 7292 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,104 | ^ 2021-07-12T13:48:20,104 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,104 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,104 from assembly/chic.c:4: 2021-07-12T13:48:20,104 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T13:48:20,105 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T13:48:20,105 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,108 assembly/chic.c:7292:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T13:48:20,108 7292 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T13:48:20,108 | ^ 2021-07-12T13:48:20,108 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T13:48:20,108 from /usr/include/python3.9/Python.h:97, 2021-07-12T13:48:20,108 from assembly/chic.c:4: 2021-07-12T13:48:20,108 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T13:48:20,109 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T13:48:20,109 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T13:48:20,190 assembly/chic.c: In function ‘__Pyx__ExceptionSave’: 2021-07-12T13:48:20,197 assembly/chic.c:8481:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T13:48:20,197 8481 | *type = tstate->exc_type; 2021-07-12T13:48:20,197 | ^~~~~~~~ 2021-07-12T13:48:20,198 | curexc_type 2021-07-12T13:48:20,204 assembly/chic.c:8482:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T13:48:20,204 8482 | *value = tstate->exc_value; 2021-07-12T13:48:20,204 | ^~~~~~~~~ 2021-07-12T13:48:20,205 | curexc_value 2021-07-12T13:48:20,211 assembly/chic.c:8483:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T13:48:20,211 8483 | *tb = tstate->exc_traceback; 2021-07-12T13:48:20,211 | ^~~~~~~~~~~~~ 2021-07-12T13:48:20,212 | curexc_traceback 2021-07-12T13:48:20,212 assembly/chic.c: In function ‘__Pyx__ExceptionReset’: 2021-07-12T13:48:20,218 assembly/chic.c:8490:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T13:48:20,218 8490 | tmp_type = tstate->exc_type; 2021-07-12T13:48:20,219 | ^~~~~~~~ 2021-07-12T13:48:20,219 | curexc_type 2021-07-12T13:48:20,225 assembly/chic.c:8491:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T13:48:20,225 8491 | tmp_value = tstate->exc_value; 2021-07-12T13:48:20,226 | ^~~~~~~~~ 2021-07-12T13:48:20,226 | curexc_value 2021-07-12T13:48:20,232 assembly/chic.c:8492:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T13:48:20,233 8492 | tmp_tb = tstate->exc_traceback; 2021-07-12T13:48:20,233 | ^~~~~~~~~~~~~ 2021-07-12T13:48:20,233 | curexc_traceback 2021-07-12T13:48:20,239 assembly/chic.c:8493:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T13:48:20,239 8493 | tstate->exc_type = type; 2021-07-12T13:48:20,240 | ^~~~~~~~ 2021-07-12T13:48:20,240 | curexc_type 2021-07-12T13:48:20,246 assembly/chic.c:8494:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T13:48:20,246 8494 | tstate->exc_value = value; 2021-07-12T13:48:20,247 | ^~~~~~~~~ 2021-07-12T13:48:20,247 | curexc_value 2021-07-12T13:48:20,253 assembly/chic.c:8495:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T13:48:20,253 8495 | tstate->exc_traceback = tb; 2021-07-12T13:48:20,254 | ^~~~~~~~~~~~~ 2021-07-12T13:48:20,254 | curexc_traceback 2021-07-12T13:48:20,259 assembly/chic.c: In function ‘__Pyx__GetException’: 2021-07-12T13:48:20,266 assembly/chic.c:8550:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T13:48:20,266 8550 | tmp_type = tstate->exc_type; 2021-07-12T13:48:20,266 | ^~~~~~~~ 2021-07-12T13:48:20,266 | curexc_type 2021-07-12T13:48:20,273 assembly/chic.c:8551:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T13:48:20,273 8551 | tmp_value = tstate->exc_value; 2021-07-12T13:48:20,274 | ^~~~~~~~~ 2021-07-12T13:48:20,274 | curexc_value 2021-07-12T13:48:20,280 assembly/chic.c:8552:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T13:48:20,280 8552 | tmp_tb = tstate->exc_traceback; 2021-07-12T13:48:20,280 | ^~~~~~~~~~~~~ 2021-07-12T13:48:20,280 | curexc_traceback 2021-07-12T13:48:20,287 assembly/chic.c:8553:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T13:48:20,287 8553 | tstate->exc_type = local_type; 2021-07-12T13:48:20,288 | ^~~~~~~~ 2021-07-12T13:48:20,288 | curexc_type 2021-07-12T13:48:20,294 assembly/chic.c:8554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T13:48:20,295 8554 | tstate->exc_value = local_value; 2021-07-12T13:48:20,295 | ^~~~~~~~~ 2021-07-12T13:48:20,295 | curexc_value 2021-07-12T13:48:20,302 assembly/chic.c:8555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T13:48:20,302 8555 | tstate->exc_traceback = local_tb; 2021-07-12T13:48:20,302 | ^~~~~~~~~~~~~ 2021-07-12T13:48:20,302 | curexc_traceback 2021-07-12T13:48:20,424 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T13:48:20,539 Building wheel for jcvi (setup.py): finished with status 'error' 2021-07-12T13:48:20,539 ERROR: Failed building wheel for jcvi 2021-07-12T13:48:20,540 Running setup.py clean for jcvi 2021-07-12T13:48:20,540 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-05a97kzf/jcvi_cc526a8835ed40ad80043ab17ed239f9/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-05a97kzf/jcvi_cc526a8835ed40ad80043ab17ed239f9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T13:48:21,811 running clean 2021-07-12T13:48:21,813 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-12T13:48:21,815 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-12T13:48:21,885 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-12T13:48:21,886 'build/scripts-3.9' does not exist -- can't clean it 2021-07-12T13:48:21,886 removing 'build' 2021-07-12T13:48:21,975 Failed to build jcvi 2021-07-12T13:48:21,975 ERROR: Failed to build one or more wheels 2021-07-12T13:48:21,976 Exception information: 2021-07-12T13:48:21,976 Traceback (most recent call last): 2021-07-12T13:48:21,976 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T13:48:21,976 status = self.run(options, args) 2021-07-12T13:48:21,976 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T13:48:21,976 return func(self, options, args) 2021-07-12T13:48:21,976 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T13:48:21,976 raise CommandError( 2021-07-12T13:48:21,976 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T13:48:21,980 Removed build tracker: '/tmp/pip-req-tracker-6ry0ufr7'