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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-12T14:14:20,667 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-12T14:14:20,668 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-12T14:14:20,668 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-12T14:14:20,668 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-12T14:14:20,668 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-12T14:14:20,669 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-12T14:14:20,669 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-12T14:14:20,669 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-12T14:14:20,670 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-12T14:14:20,670 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-12T14:14:20,695 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-12T14:14:20,713 Collecting jcvi==0.7.5 2021-07-12T14:14:20,715 Created temporary directory: /tmp/pip-unpack-gszzx7h9 2021-07-12T14:14:21,033 Downloading jcvi-0.7.5.tar.gz (758 kB) 2021-07-12T14:14:21,777 Added jcvi==0.7.5 from https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 to build tracker '/tmp/pip-req-tracker-gp9vhk4t' 2021-07-12T14:14:21,778 Running setup.py (path:/tmp/pip-wheel-epmz6mz0/jcvi_83b9ae5385564492a98507007ead2c24/setup.py) egg_info for package jcvi 2021-07-12T14:14:21,779 Created temporary directory: /tmp/pip-pip-egg-info-ocp1skwp 2021-07-12T14:14:21,779 Running command python setup.py egg_info 2021-07-12T14:14:22,978 running egg_info 2021-07-12T14:14:22,980 creating /tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info 2021-07-12T14:14:22,982 writing /tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/PKG-INFO 2021-07-12T14:14:22,986 writing dependency_links to /tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/dependency_links.txt 2021-07-12T14:14:22,989 writing requirements to /tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/requires.txt 2021-07-12T14:14:22,990 writing top-level names to /tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/top_level.txt 2021-07-12T14:14:22,991 writing manifest file '/tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/SOURCES.txt' 2021-07-12T14:14:23,210 reading manifest file '/tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/SOURCES.txt' 2021-07-12T14:14:23,212 reading manifest template 'MANIFEST.in' 2021-07-12T14:14:23,216 adding license file 'LICENSE' 2021-07-12T14:14:23,224 writing manifest file '/tmp/pip-pip-egg-info-ocp1skwp/jcvi.egg-info/SOURCES.txt' 2021-07-12T14:14:23,323 Source in /tmp/pip-wheel-epmz6mz0/jcvi_83b9ae5385564492a98507007ead2c24 has version 0.7.5, which satisfies requirement jcvi==0.7.5 from https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 2021-07-12T14:14:23,324 Removed jcvi==0.7.5 from https://files.pythonhosted.org/packages/e9/dd/64edf8d5ff645b2b186030df11516cd90daef149b5a3b8658fbe52d3c804/jcvi-0.7.5.tar.gz#sha256=469186839a55f6ccb0930a812fb4166833d4977f80faf646934d8042321674b2 from build tracker '/tmp/pip-req-tracker-gp9vhk4t' 2021-07-12T14:14:23,329 Created temporary directory: /tmp/pip-unpack-_h2fdapn 2021-07-12T14:14:23,329 Building wheels for collected packages: jcvi 2021-07-12T14:14:23,333 Created temporary directory: /tmp/pip-wheel-8byvn60j 2021-07-12T14:14:23,333 Building wheel for jcvi (setup.py): started 2021-07-12T14:14:23,333 Destination directory: /tmp/pip-wheel-8byvn60j 2021-07-12T14:14:23,334 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-epmz6mz0/jcvi_83b9ae5385564492a98507007ead2c24/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-epmz6mz0/jcvi_83b9ae5385564492a98507007ead2c24/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8byvn60j 2021-07-12T14:14:24,495 running bdist_wheel 2021-07-12T14:14:24,499 running build 2021-07-12T14:14:24,499 running build_py 2021-07-12T14:14:24,635 creating build 2021-07-12T14:14:24,635 creating build/lib.linux-armv7l-3.9 2021-07-12T14:14:24,636 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-12T14:14:24,637 copying ./__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-12T14:14:24,640 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,640 copying ./utils/progressbar.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,643 copying ./utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,646 copying ./utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,648 copying ./utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,651 copying ./utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,653 copying ./utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,656 copying ./utils/natsort.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,658 copying ./utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,660 copying ./utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,663 copying ./utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,666 copying ./utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,668 copying ./utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,670 copying ./utils/counter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,673 copying ./utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,675 copying ./utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,678 copying ./utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,680 copying ./utils/brewer2mpl.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T14:14:24,689 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,690 copying ./graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,693 copying ./graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,697 copying ./graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,700 copying ./graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,704 copying ./graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,709 copying ./graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,712 copying ./graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,714 copying ./graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,717 copying ./graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,722 copying ./graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,725 copying ./graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,730 copying ./graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,735 copying ./graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,737 copying ./graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,742 copying ./graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,745 copying ./graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,748 copying ./graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,751 copying ./graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,754 copying ./graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,757 copying ./graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,761 copying ./graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,763 copying ./graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T14:14:24,768 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,769 copying ./projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,772 copying ./projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,775 copying ./projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,778 copying ./projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,781 copying ./projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,784 copying ./projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,787 copying ./projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,792 copying ./projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,795 copying ./projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,796 copying ./projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,799 copying ./projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,801 copying ./projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,804 copying ./projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T14:14:24,807 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,808 copying ./algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,811 copying ./algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,813 copying ./algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,816 copying ./algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,818 copying ./algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,821 copying ./algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,823 copying ./algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,826 copying ./algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,828 copying ./algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,830 copying ./algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,833 copying ./algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,836 copying ./algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T14:14:24,840 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,841 copying ./assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,844 copying ./assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,846 copying ./assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,850 copying ./assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,854 copying ./assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,858 copying ./assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,861 copying ./assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,864 copying ./assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,867 copying ./assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,869 copying ./assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,872 copying ./assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,876 copying ./assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,880 copying ./assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,882 copying ./assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,884 copying ./assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,887 copying ./assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,890 copying ./assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,893 copying ./assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,896 copying ./assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,898 copying ./assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,901 copying ./assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,904 copying ./assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,908 copying ./assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,910 copying ./assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,912 copying ./assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,915 copying ./assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,917 copying ./assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T14:14:24,922 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,923 copying ./variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,925 copying ./variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,928 copying ./variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,932 copying ./variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,935 copying ./variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,936 copying ./variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,939 copying ./variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,941 copying ./variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,944 copying ./variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,946 copying ./variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T14:14:24,950 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,951 copying ./annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,954 copying ./annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,957 copying ./annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,960 copying ./annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,963 copying ./annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,966 copying ./annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,969 copying ./annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,972 copying ./annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,974 copying ./annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,977 copying ./annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,979 copying ./annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,982 copying ./annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T14:14:24,987 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:24,988 copying ./apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:24,990 copying ./apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:24,993 copying ./apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:24,996 copying ./apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:24,999 copying ./apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,002 copying ./apps/console.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,005 copying ./apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,007 copying ./apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,013 copying ./apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,021 copying ./apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,027 copying ./apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,033 copying ./apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,036 copying ./apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,039 copying ./apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,044 copying ./apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,047 copying ./apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,050 copying ./apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,052 copying ./apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,056 copying ./apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,060 copying ./apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,064 copying ./apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,066 copying ./apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,068 copying ./apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,070 copying ./apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,077 copying ./apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,089 copying ./apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,100 copying ./apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,112 copying ./apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T14:14:25,131 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,134 copying ./formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,139 copying ./formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,146 copying ./formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,159 copying ./formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,176 copying ./formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,185 copying ./formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,194 copying ./formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,203 copying ./formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,212 copying ./formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,220 copying ./formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,228 copying ./formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,232 copying ./formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,235 copying ./formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,239 copying ./formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,242 copying ./formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,246 copying ./formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,251 copying ./formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,253 copying ./formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,257 copying ./formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,259 copying ./formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,262 copying ./formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,265 copying ./formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,268 copying ./formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,270 copying ./formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,274 copying ./formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,276 copying ./formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,278 copying ./formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,281 copying ./formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T14:14:25,284 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,285 copying ./compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,288 copying ./compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,291 copying ./compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,294 copying ./compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,296 copying ./compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,299 copying ./compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,301 copying ./compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,305 copying ./compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,307 copying ./compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,311 copying ./compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T14:14:25,313 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,315 copying ./utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,316 running egg_info 2021-07-12T14:14:25,332 writing jcvi.egg-info/PKG-INFO 2021-07-12T14:14:25,335 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-12T14:14:25,338 writing requirements to jcvi.egg-info/requires.txt 2021-07-12T14:14:25,340 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-12T14:14:25,366 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-12T14:14:25,374 reading manifest template 'MANIFEST.in' 2021-07-12T14:14:25,378 adding license file 'LICENSE' 2021-07-12T14:14:25,388 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-12T14:14:25,395 copying ./utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,399 copying ./utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,401 copying ./utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,404 copying ./utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,407 copying ./utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,412 copying ./utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,415 copying ./utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,418 copying ./utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,422 copying ./utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,424 copying ./utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,427 copying ./utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,433 copying ./utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,436 copying ./utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T14:14:25,454 running build_ext 2021-07-12T14:14:25,526 cythoning assembly/chic.pyx to assembly/chic.c 2021-07-12T14:14:26,192 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-epmz6mz0/jcvi_83b9ae5385564492a98507007ead2c24/assembly/chic.pyx 2021-07-12T14:14:26,192 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T14:14:29,230 building 'jcvi.assembly.chic' extension 2021-07-12T14:14:29,231 creating build/temp.linux-armv7l-3.9 2021-07-12T14:14:29,231 creating build/temp.linux-armv7l-3.9/assembly 2021-07-12T14:14:29,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c assembly/chic.c -o build/temp.linux-armv7l-3.9/assembly/chic.o -O3 2021-07-12T14:14:29,639 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T14:14:29,640 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T14:14:29,640 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T14:14:29,640 from assembly/chic.c:612: 2021-07-12T14:14:29,640 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T14:14:29,640 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T14:14:29,641 | ^~~~~~~ 2021-07-12T14:14:33,378 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/assembly/chic.o -o build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so 2021-07-12T14:14:33,520 installing to build/bdist.linux-armv7l/wheel 2021-07-12T14:14:33,520 running install 2021-07-12T14:14:33,522 running install_lib 2021-07-12T14:14:33,526 creating build/bdist.linux-armv7l 2021-07-12T14:14:33,527 creating build/bdist.linux-armv7l/wheel 2021-07-12T14:14:33,529 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-12T14:14:33,531 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,532 copying build/lib.linux-armv7l-3.9/jcvi/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,535 copying build/lib.linux-armv7l-3.9/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,538 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,539 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,542 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,544 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,546 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,548 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,554 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,557 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,560 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,564 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,566 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,568 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,570 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/colorbrewer_all_schemes.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,576 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,579 copying build/lib.linux-armv7l-3.9/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-12T14:14:33,581 copying build/lib.linux-armv7l-3.9/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,583 copying build/lib.linux-armv7l-3.9/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,586 copying build/lib.linux-armv7l-3.9/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,589 copying build/lib.linux-armv7l-3.9/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,592 copying build/lib.linux-armv7l-3.9/jcvi/utils/natsort.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,594 copying build/lib.linux-armv7l-3.9/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,596 copying build/lib.linux-armv7l-3.9/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,599 copying build/lib.linux-armv7l-3.9/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,602 copying build/lib.linux-armv7l-3.9/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,603 copying build/lib.linux-armv7l-3.9/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,605 copying build/lib.linux-armv7l-3.9/jcvi/utils/counter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,608 copying build/lib.linux-armv7l-3.9/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,610 copying build/lib.linux-armv7l-3.9/jcvi/utils/iter.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,613 copying build/lib.linux-armv7l-3.9/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,615 copying build/lib.linux-armv7l-3.9/jcvi/utils/brewer2mpl.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-12T14:14:33,619 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,620 copying build/lib.linux-armv7l-3.9/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,623 copying build/lib.linux-armv7l-3.9/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,626 copying build/lib.linux-armv7l-3.9/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,629 copying build/lib.linux-armv7l-3.9/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,632 copying build/lib.linux-armv7l-3.9/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,635 copying build/lib.linux-armv7l-3.9/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,637 copying build/lib.linux-armv7l-3.9/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,639 copying build/lib.linux-armv7l-3.9/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,642 copying build/lib.linux-armv7l-3.9/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,644 copying build/lib.linux-armv7l-3.9/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,646 copying build/lib.linux-armv7l-3.9/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,649 copying build/lib.linux-armv7l-3.9/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,652 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,653 copying build/lib.linux-armv7l-3.9/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,656 copying build/lib.linux-armv7l-3.9/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,659 copying build/lib.linux-armv7l-3.9/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,662 copying build/lib.linux-armv7l-3.9/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,664 copying build/lib.linux-armv7l-3.9/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,666 copying build/lib.linux-armv7l-3.9/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,669 copying build/lib.linux-armv7l-3.9/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,672 copying build/lib.linux-armv7l-3.9/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,674 copying build/lib.linux-armv7l-3.9/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-12T14:14:33,677 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,678 copying build/lib.linux-armv7l-3.9/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,680 copying build/lib.linux-armv7l-3.9/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,683 copying build/lib.linux-armv7l-3.9/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,685 copying build/lib.linux-armv7l-3.9/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,688 copying build/lib.linux-armv7l-3.9/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,691 copying build/lib.linux-armv7l-3.9/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,693 copying build/lib.linux-armv7l-3.9/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,698 copying build/lib.linux-armv7l-3.9/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,701 copying build/lib.linux-armv7l-3.9/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,702 copying build/lib.linux-armv7l-3.9/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,704 copying build/lib.linux-armv7l-3.9/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,706 copying build/lib.linux-armv7l-3.9/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,709 copying build/lib.linux-armv7l-3.9/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-12T14:14:33,712 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,712 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,715 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,716 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,720 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,722 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,724 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,726 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,729 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,731 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,732 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,734 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,737 copying build/lib.linux-armv7l-3.9/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-12T14:14:33,740 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,740 copying build/lib.linux-armv7l-3.9/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,744 copying build/lib.linux-armv7l-3.9/jcvi/assembly/bambus.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,745 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,750 copying build/lib.linux-armv7l-3.9/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,753 copying build/lib.linux-armv7l-3.9/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,756 copying build/lib.linux-armv7l-3.9/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,759 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,761 copying build/lib.linux-armv7l-3.9/jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,769 copying build/lib.linux-armv7l-3.9/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,772 copying build/lib.linux-armv7l-3.9/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,774 copying build/lib.linux-armv7l-3.9/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,776 copying build/lib.linux-armv7l-3.9/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,780 copying build/lib.linux-armv7l-3.9/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,783 copying build/lib.linux-armv7l-3.9/jcvi/assembly/amos.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,785 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,786 copying build/lib.linux-armv7l-3.9/jcvi/assembly/sspace.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,789 copying build/lib.linux-armv7l-3.9/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,792 copying build/lib.linux-armv7l-3.9/jcvi/assembly/unitig.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,794 copying build/lib.linux-armv7l-3.9/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,797 copying build/lib.linux-armv7l-3.9/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,800 copying build/lib.linux-armv7l-3.9/jcvi/assembly/meraculous.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,801 copying build/lib.linux-armv7l-3.9/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,805 copying build/lib.linux-armv7l-3.9/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,808 copying build/lib.linux-armv7l-3.9/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,811 copying build/lib.linux-armv7l-3.9/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,813 copying build/lib.linux-armv7l-3.9/jcvi/assembly/pbjelly.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,815 copying build/lib.linux-armv7l-3.9/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,817 copying build/lib.linux-armv7l-3.9/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-12T14:14:33,820 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,821 copying build/lib.linux-armv7l-3.9/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,823 copying build/lib.linux-armv7l-3.9/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,826 copying build/lib.linux-armv7l-3.9/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,829 copying build/lib.linux-armv7l-3.9/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,832 copying build/lib.linux-armv7l-3.9/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,833 copying build/lib.linux-armv7l-3.9/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,835 copying build/lib.linux-armv7l-3.9/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,838 copying build/lib.linux-armv7l-3.9/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,841 copying build/lib.linux-armv7l-3.9/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,843 copying build/lib.linux-armv7l-3.9/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-12T14:14:33,845 copying build/lib.linux-armv7l-3.9/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-12T14:14:33,848 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,849 copying build/lib.linux-armv7l-3.9/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,852 copying build/lib.linux-armv7l-3.9/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,855 copying build/lib.linux-armv7l-3.9/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,857 copying build/lib.linux-armv7l-3.9/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,860 copying build/lib.linux-armv7l-3.9/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,862 copying build/lib.linux-armv7l-3.9/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,865 copying build/lib.linux-armv7l-3.9/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,868 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,870 copying build/lib.linux-armv7l-3.9/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,873 copying build/lib.linux-armv7l-3.9/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,874 copying build/lib.linux-armv7l-3.9/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,877 copying build/lib.linux-armv7l-3.9/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-12T14:14:33,880 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,881 copying build/lib.linux-armv7l-3.9/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,883 copying build/lib.linux-armv7l-3.9/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,886 copying build/lib.linux-armv7l-3.9/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,889 copying build/lib.linux-armv7l-3.9/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,891 copying build/lib.linux-armv7l-3.9/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,894 copying build/lib.linux-armv7l-3.9/jcvi/apps/console.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,896 copying build/lib.linux-armv7l-3.9/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,898 copying build/lib.linux-armv7l-3.9/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,901 copying build/lib.linux-armv7l-3.9/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,905 copying build/lib.linux-armv7l-3.9/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,908 copying build/lib.linux-armv7l-3.9/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,912 copying build/lib.linux-armv7l-3.9/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,914 copying build/lib.linux-armv7l-3.9/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,917 copying build/lib.linux-armv7l-3.9/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,920 copying build/lib.linux-armv7l-3.9/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,922 copying build/lib.linux-armv7l-3.9/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,924 copying build/lib.linux-armv7l-3.9/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,926 copying build/lib.linux-armv7l-3.9/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,929 copying build/lib.linux-armv7l-3.9/jcvi/apps/tesseract.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,931 copying build/lib.linux-armv7l-3.9/jcvi/apps/cap3.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,933 copying build/lib.linux-armv7l-3.9/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,935 copying build/lib.linux-armv7l-3.9/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,937 copying build/lib.linux-armv7l-3.9/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,939 copying build/lib.linux-armv7l-3.9/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,941 copying build/lib.linux-armv7l-3.9/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,943 copying build/lib.linux-armv7l-3.9/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,945 copying build/lib.linux-armv7l-3.9/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,947 copying build/lib.linux-armv7l-3.9/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-12T14:14:33,951 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,952 copying build/lib.linux-armv7l-3.9/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,954 copying build/lib.linux-armv7l-3.9/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,957 copying build/lib.linux-armv7l-3.9/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,960 copying build/lib.linux-armv7l-3.9/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,964 copying build/lib.linux-armv7l-3.9/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,967 copying build/lib.linux-armv7l-3.9/jcvi/formats/sbt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,969 copying build/lib.linux-armv7l-3.9/jcvi/formats/btab.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,972 copying build/lib.linux-armv7l-3.9/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,974 copying build/lib.linux-armv7l-3.9/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,979 copying build/lib.linux-armv7l-3.9/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,985 copying build/lib.linux-armv7l-3.9/jcvi/formats/ace.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,987 copying build/lib.linux-armv7l-3.9/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,990 copying build/lib.linux-armv7l-3.9/jcvi/formats/posmap.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,993 copying build/lib.linux-armv7l-3.9/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,994 copying build/lib.linux-armv7l-3.9/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:33,998 copying build/lib.linux-armv7l-3.9/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,001 copying build/lib.linux-armv7l-3.9/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,003 copying build/lib.linux-armv7l-3.9/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,006 copying build/lib.linux-armv7l-3.9/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,008 copying build/lib.linux-armv7l-3.9/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,011 copying build/lib.linux-armv7l-3.9/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,014 copying build/lib.linux-armv7l-3.9/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,016 copying build/lib.linux-armv7l-3.9/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,017 copying build/lib.linux-armv7l-3.9/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,022 copying build/lib.linux-armv7l-3.9/jcvi/formats/fpc.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,024 copying build/lib.linux-armv7l-3.9/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,026 copying build/lib.linux-armv7l-3.9/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,028 copying build/lib.linux-armv7l-3.9/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-12T14:14:34,031 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,032 copying build/lib.linux-armv7l-3.9/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,035 copying build/lib.linux-armv7l-3.9/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,037 copying build/lib.linux-armv7l-3.9/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,040 copying build/lib.linux-armv7l-3.9/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,043 copying build/lib.linux-armv7l-3.9/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,046 copying build/lib.linux-armv7l-3.9/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,048 copying build/lib.linux-armv7l-3.9/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,052 copying build/lib.linux-armv7l-3.9/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,055 copying build/lib.linux-armv7l-3.9/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,059 copying build/lib.linux-armv7l-3.9/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-12T14:14:34,061 running install_egg_info 2021-07-12T14:14:34,072 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-0.7.5-py3.9.egg-info 2021-07-12T14:14:34,088 running install_scripts 2021-07-12T14:14:34,132 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-12T14:14:34,137 creating build/bdist.linux-armv7l/wheel/jcvi-0.7.5.dist-info/WHEEL 2021-07-12T14:14:34,139 creating '/tmp/pip-wheel-8byvn60j/jcvi-0.7.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T14:14:34,141 adding 'jcvi/__init__.py' 2021-07-12T14:14:34,143 adding 'jcvi/algorithms/__init__.py' 2021-07-12T14:14:34,144 adding 'jcvi/algorithms/__main__.py' 2021-07-12T14:14:34,146 adding 'jcvi/algorithms/ec.py' 2021-07-12T14:14:34,148 adding 'jcvi/algorithms/formula.py' 2021-07-12T14:14:34,151 adding 'jcvi/algorithms/graph.py' 2021-07-12T14:14:34,152 adding 'jcvi/algorithms/lis.py' 2021-07-12T14:14:34,156 adding 'jcvi/algorithms/lpsolve.py' 2021-07-12T14:14:34,158 adding 'jcvi/algorithms/matrix.py' 2021-07-12T14:14:34,159 adding 'jcvi/algorithms/maxsum.py' 2021-07-12T14:14:34,160 adding 'jcvi/algorithms/ml.py' 2021-07-12T14:14:34,162 adding 'jcvi/algorithms/supermap.py' 2021-07-12T14:14:34,164 adding 'jcvi/algorithms/tsp.py' 2021-07-12T14:14:34,166 adding 'jcvi/annotation/__init__.py' 2021-07-12T14:14:34,167 adding 'jcvi/annotation/__main__.py' 2021-07-12T14:14:34,170 adding 'jcvi/annotation/ahrd.py' 2021-07-12T14:14:34,172 adding 'jcvi/annotation/automaton.py' 2021-07-12T14:14:34,173 adding 'jcvi/annotation/depth.py' 2021-07-12T14:14:34,175 adding 'jcvi/annotation/evm.py' 2021-07-12T14:14:34,177 adding 'jcvi/annotation/maker.py' 2021-07-12T14:14:34,180 adding 'jcvi/annotation/pasa.py' 2021-07-12T14:14:34,182 adding 'jcvi/annotation/qc.py' 2021-07-12T14:14:34,188 adding 'jcvi/annotation/reformat.py' 2021-07-12T14:14:34,190 adding 'jcvi/annotation/stats.py' 2021-07-12T14:14:34,192 adding 'jcvi/annotation/train.py' 2021-07-12T14:14:34,194 adding 'jcvi/apps/__init__.py' 2021-07-12T14:14:34,195 adding 'jcvi/apps/__main__.py' 2021-07-12T14:14:34,197 adding 'jcvi/apps/align.py' 2021-07-12T14:14:34,205 adding 'jcvi/apps/base.py' 2021-07-12T14:14:34,207 adding 'jcvi/apps/biomart.py' 2021-07-12T14:14:34,209 adding 'jcvi/apps/blastplus.py' 2021-07-12T14:14:34,210 adding 'jcvi/apps/bowtie.py' 2021-07-12T14:14:34,211 adding 'jcvi/apps/bwa.py' 2021-07-12T14:14:34,213 adding 'jcvi/apps/cap3.py' 2021-07-12T14:14:34,215 adding 'jcvi/apps/cdhit.py' 2021-07-12T14:14:34,216 adding 'jcvi/apps/console.py' 2021-07-12T14:14:34,217 adding 'jcvi/apps/emboss.py' 2021-07-12T14:14:34,220 adding 'jcvi/apps/fetch.py' 2021-07-12T14:14:34,222 adding 'jcvi/apps/gbsubmit.py' 2021-07-12T14:14:34,224 adding 'jcvi/apps/gmap.py' 2021-07-12T14:14:34,227 adding 'jcvi/apps/grid.py' 2021-07-12T14:14:34,231 adding 'jcvi/apps/ks.py' 2021-07-12T14:14:34,233 adding 'jcvi/apps/lastz.py' 2021-07-12T14:14:34,234 adding 'jcvi/apps/mask.py' 2021-07-12T14:14:34,239 adding 'jcvi/apps/phylo.py' 2021-07-12T14:14:34,240 adding 'jcvi/apps/r.py' 2021-07-12T14:14:34,242 adding 'jcvi/apps/restriction.py' 2021-07-12T14:14:34,243 adding 'jcvi/apps/script.py' 2021-07-12T14:14:34,244 adding 'jcvi/apps/softlink.py' 2021-07-12T14:14:34,246 adding 'jcvi/apps/tesseract.py' 2021-07-12T14:14:34,251 adding 'jcvi/apps/uclust.py' 2021-07-12T14:14:34,252 adding 'jcvi/apps/uniprot.py' 2021-07-12T14:14:34,254 adding 'jcvi/apps/vecscreen.py' 2021-07-12T14:14:34,256 adding 'jcvi/assembly/__init__.py' 2021-07-12T14:14:34,257 adding 'jcvi/assembly/__main__.py' 2021-07-12T14:14:34,266 adding 'jcvi/assembly/allmaps.py' 2021-07-12T14:14:34,269 adding 'jcvi/assembly/allpaths.py' 2021-07-12T14:14:34,271 adding 'jcvi/assembly/amos.py' 2021-07-12T14:14:34,273 adding 'jcvi/assembly/automaton.py' 2021-07-12T14:14:34,274 adding 'jcvi/assembly/bambus.py' 2021-07-12T14:14:34,276 adding 'jcvi/assembly/base.py' 2021-07-12T14:14:34,281 adding 'jcvi/assembly/ca.py' 2021-07-12T14:14:34,328 adding 'jcvi/assembly/chic.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T14:14:34,331 adding 'jcvi/assembly/coverage.py' 2021-07-12T14:14:34,333 adding 'jcvi/assembly/gaps.py' 2021-07-12T14:14:34,336 adding 'jcvi/assembly/geneticmap.py' 2021-07-12T14:14:34,340 adding 'jcvi/assembly/goldenpath.py' 2021-07-12T14:14:34,346 adding 'jcvi/assembly/hic.py' 2021-07-12T14:14:34,350 adding 'jcvi/assembly/kmer.py' 2021-07-12T14:14:34,351 adding 'jcvi/assembly/meraculous.py' 2021-07-12T14:14:34,353 adding 'jcvi/assembly/opticalmap.py' 2021-07-12T14:14:34,357 adding 'jcvi/assembly/patch.py' 2021-07-12T14:14:34,359 adding 'jcvi/assembly/pbjelly.py' 2021-07-12T14:14:34,362 adding 'jcvi/assembly/postprocess.py' 2021-07-12T14:14:34,365 adding 'jcvi/assembly/preprocess.py' 2021-07-12T14:14:34,367 adding 'jcvi/assembly/sim.py' 2021-07-12T14:14:34,368 adding 'jcvi/assembly/soap.py' 2021-07-12T14:14:34,370 adding 'jcvi/assembly/sspace.py' 2021-07-12T14:14:34,373 adding 'jcvi/assembly/syntenypath.py' 2021-07-12T14:14:34,374 adding 'jcvi/assembly/trinity.py' 2021-07-12T14:14:34,376 adding 'jcvi/assembly/unitig.py' 2021-07-12T14:14:34,378 adding 'jcvi/compara/__init__.py' 2021-07-12T14:14:34,379 adding 'jcvi/compara/__main__.py' 2021-07-12T14:14:34,381 adding 'jcvi/compara/blastfilter.py' 2021-07-12T14:14:34,384 adding 'jcvi/compara/catalog.py' 2021-07-12T14:14:34,388 adding 'jcvi/compara/fractionation.py' 2021-07-12T14:14:34,390 adding 'jcvi/compara/pad.py' 2021-07-12T14:14:34,392 adding 'jcvi/compara/quota.py' 2021-07-12T14:14:34,394 adding 'jcvi/compara/reconstruct.py' 2021-07-12T14:14:34,396 adding 'jcvi/compara/synfind.py' 2021-07-12T14:14:34,402 adding 'jcvi/compara/synteny.py' 2021-07-12T14:14:34,405 adding 'jcvi/formats/__init__.py' 2021-07-12T14:14:34,406 adding 'jcvi/formats/__main__.py' 2021-07-12T14:14:34,408 adding 'jcvi/formats/ace.py' 2021-07-12T14:14:34,415 adding 'jcvi/formats/agp.py' 2021-07-12T14:14:34,420 adding 'jcvi/formats/base.py' 2021-07-12T14:14:34,429 adding 'jcvi/formats/bed.py' 2021-07-12T14:14:34,434 adding 'jcvi/formats/blast.py' 2021-07-12T14:14:34,436 adding 'jcvi/formats/btab.py' 2021-07-12T14:14:34,437 adding 'jcvi/formats/cdt.py' 2021-07-12T14:14:34,439 adding 'jcvi/formats/chain.py' 2021-07-12T14:14:34,441 adding 'jcvi/formats/contig.py' 2021-07-12T14:14:34,443 adding 'jcvi/formats/coords.py' 2021-07-12T14:14:34,445 adding 'jcvi/formats/excel.py' 2021-07-12T14:14:34,454 adding 'jcvi/formats/fasta.py' 2021-07-12T14:14:34,458 adding 'jcvi/formats/fastq.py' 2021-07-12T14:14:34,460 adding 'jcvi/formats/fpc.py' 2021-07-12T14:14:34,462 adding 'jcvi/formats/genbank.py' 2021-07-12T14:14:34,476 adding 'jcvi/formats/gff.py' 2021-07-12T14:14:34,478 adding 'jcvi/formats/html.py' 2021-07-12T14:14:34,480 adding 'jcvi/formats/maf.py' 2021-07-12T14:14:34,482 adding 'jcvi/formats/obo.py' 2021-07-12T14:14:34,483 adding 'jcvi/formats/pdf.py' 2021-07-12T14:14:34,485 adding 'jcvi/formats/posmap.py' 2021-07-12T14:14:34,487 adding 'jcvi/formats/psl.py' 2021-07-12T14:14:34,490 adding 'jcvi/formats/sam.py' 2021-07-12T14:14:34,493 adding 'jcvi/formats/sbt.py' 2021-07-12T14:14:34,495 adding 'jcvi/formats/sizes.py' 2021-07-12T14:14:34,498 adding 'jcvi/formats/vcf.py' 2021-07-12T14:14:34,501 adding 'jcvi/graphics/__init__.py' 2021-07-12T14:14:34,503 adding 'jcvi/graphics/__main__.py' 2021-07-12T14:14:34,505 adding 'jcvi/graphics/align.py' 2021-07-12T14:14:34,508 adding 'jcvi/graphics/assembly.py' 2021-07-12T14:14:34,511 adding 'jcvi/graphics/base.py' 2021-07-12T14:14:34,513 adding 'jcvi/graphics/blastplot.py' 2021-07-12T14:14:34,516 adding 'jcvi/graphics/chromosome.py' 2021-07-12T14:14:34,518 adding 'jcvi/graphics/coverage.py' 2021-07-12T14:14:34,520 adding 'jcvi/graphics/dotplot.py' 2021-07-12T14:14:34,523 adding 'jcvi/graphics/glyph.py' 2021-07-12T14:14:34,527 adding 'jcvi/graphics/grabseeds.py' 2021-07-12T14:14:34,529 adding 'jcvi/graphics/graph.py' 2021-07-12T14:14:34,531 adding 'jcvi/graphics/heatmap.py' 2021-07-12T14:14:34,533 adding 'jcvi/graphics/histogram.py' 2021-07-12T14:14:34,535 adding 'jcvi/graphics/karyotype.py' 2021-07-12T14:14:34,539 adding 'jcvi/graphics/landscape.py' 2021-07-12T14:14:34,542 adding 'jcvi/graphics/logo.py' 2021-07-12T14:14:34,544 adding 'jcvi/graphics/mummerplot.py' 2021-07-12T14:14:34,548 adding 'jcvi/graphics/synteny.py' 2021-07-12T14:14:34,551 adding 'jcvi/graphics/tree.py' 2021-07-12T14:14:34,554 adding 'jcvi/graphics/wheel.py' 2021-07-12T14:14:34,557 adding 'jcvi/graphics/whisker.py' 2021-07-12T14:14:34,559 adding 'jcvi/projects/__init__.py' 2021-07-12T14:14:34,561 adding 'jcvi/projects/__main__.py' 2021-07-12T14:14:34,562 adding 'jcvi/projects/alfalfa.py' 2021-07-12T14:14:34,565 adding 'jcvi/projects/allmaps.py' 2021-07-12T14:14:34,567 adding 'jcvi/projects/bites.py' 2021-07-12T14:14:34,569 adding 'jcvi/projects/heterosis.py' 2021-07-12T14:14:34,572 adding 'jcvi/projects/ies.py' 2021-07-12T14:14:34,575 adding 'jcvi/projects/misc.py' 2021-07-12T14:14:34,579 adding 'jcvi/projects/napus.py' 2021-07-12T14:14:34,582 adding 'jcvi/projects/pineapple.py' 2021-07-12T14:14:34,591 adding 'jcvi/projects/str.py' 2021-07-12T14:14:34,595 adding 'jcvi/projects/synfind.py' 2021-07-12T14:14:34,599 adding 'jcvi/projects/tgbs.py' 2021-07-12T14:14:34,603 adding 'jcvi/utils/__init__.py' 2021-07-12T14:14:34,606 adding 'jcvi/utils/__main__.py' 2021-07-12T14:14:34,609 adding 'jcvi/utils/aws.py' 2021-07-12T14:14:34,611 adding 'jcvi/utils/brewer2mpl.py' 2021-07-12T14:14:34,613 adding 'jcvi/utils/cbook.py' 2021-07-12T14:14:34,615 adding 'jcvi/utils/counter.py' 2021-07-12T14:14:34,617 adding 'jcvi/utils/db.py' 2021-07-12T14:14:34,620 adding 'jcvi/utils/ez_setup.py' 2021-07-12T14:14:34,622 adding 'jcvi/utils/grouper.py' 2021-07-12T14:14:34,624 adding 'jcvi/utils/iter.py' 2021-07-12T14:14:34,626 adding 'jcvi/utils/natsort.py' 2021-07-12T14:14:34,629 adding 'jcvi/utils/orderedcollections.py' 2021-07-12T14:14:34,632 adding 'jcvi/utils/progressbar.py' 2021-07-12T14:14:34,635 adding 'jcvi/utils/range.py' 2021-07-12T14:14:34,637 adding 'jcvi/utils/table.py' 2021-07-12T14:14:34,639 adding 'jcvi/utils/taxonomy.py' 2021-07-12T14:14:34,642 adding 'jcvi/utils/webcolors.py' 2021-07-12T14:14:34,646 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-12T14:14:34,665 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-12T14:14:34,669 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-12T14:14:34,676 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-12T14:14:34,681 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-12T14:14:34,683 adding 'jcvi/utils/data/__init__.py' 2021-07-12T14:14:34,684 adding 'jcvi/utils/data/adapters.fasta' 2021-07-12T14:14:34,686 adding 'jcvi/utils/data/blosum80.mat' 2021-07-12T14:14:34,688 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-12T14:14:34,694 adding 'jcvi/utils/data/colorbrewer_all_schemes.json' 2021-07-12T14:14:34,696 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-12T14:14:34,702 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-12T14:14:34,705 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-12T14:14:34,706 adding 'jcvi/utils/data/instance.json' 2021-07-12T14:14:34,708 adding 'jcvi/variation/__init__.py' 2021-07-12T14:14:34,709 adding 'jcvi/variation/__main__.py' 2021-07-12T14:14:34,713 adding 'jcvi/variation/cnv.py' 2021-07-12T14:14:34,715 adding 'jcvi/variation/deconvolute.py' 2021-07-12T14:14:34,716 adding 'jcvi/variation/delly.py' 2021-07-12T14:14:34,718 adding 'jcvi/variation/impute.py' 2021-07-12T14:14:34,720 adding 'jcvi/variation/phase.py' 2021-07-12T14:14:34,722 adding 'jcvi/variation/snp.py' 2021-07-12T14:14:34,728 adding 'jcvi/variation/str.py' 2021-07-12T14:14:34,730 adding 'jcvi/variation/tassel.py' 2021-07-12T14:14:34,732 adding 'jcvi-0.7.5.dist-info/LICENSE' 2021-07-12T14:14:34,734 adding 'jcvi-0.7.5.dist-info/METADATA' 2021-07-12T14:14:34,735 adding 'jcvi-0.7.5.dist-info/WHEEL' 2021-07-12T14:14:34,736 adding 'jcvi-0.7.5.dist-info/top_level.txt' 2021-07-12T14:14:34,739 adding 'jcvi-0.7.5.dist-info/RECORD' 2021-07-12T14:14:34,760 removing build/bdist.linux-armv7l/wheel 2021-07-12T14:14:35,055 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-12T14:14:35,069 Created wheel for jcvi: filename=jcvi-0.7.5-cp39-cp39-linux_armv7l.whl size=952872 sha256=258daecc5138c6860e0345eb7f241d8f97747caa7a432abc0706a3a391496e72 2021-07-12T14:14:35,069 Stored in directory: /tmp/pip-ephem-wheel-cache-a7swudzd/wheels/70/4f/4b/764b841bc085731389e5cb15b3e3c04b9f993d7524c7206502 2021-07-12T14:14:35,088 Successfully built jcvi 2021-07-12T14:14:35,125 Removed build tracker: '/tmp/pip-req-tracker-gp9vhk4t'