2021-07-12T14:41:19,671 Created temporary directory: /tmp/pip-ephem-wheel-cache-scnh3na1
2021-07-12T14:41:19,674 Created temporary directory: /tmp/pip-req-tracker-zjv5vq9c
2021-07-12T14:41:19,675 Initialized build tracking at /tmp/pip-req-tracker-zjv5vq9c
2021-07-12T14:41:19,675 Created build tracker: /tmp/pip-req-tracker-zjv5vq9c
2021-07-12T14:41:19,675 Entered build tracker: /tmp/pip-req-tracker-zjv5vq9c
2021-07-12T14:41:19,676 Created temporary directory: /tmp/pip-wheel-atfgk74z
2021-07-12T14:41:19,707 1 location(s) to search for versions of biocode:
2021-07-12T14:41:19,707 * https://pypi.org/simple/biocode/
2021-07-12T14:41:19,708 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T14:41:19,708 Getting page https://pypi.org/simple/biocode/
2021-07-12T14:41:19,710 Found index url https://pypi.org/simple
2021-07-12T14:41:19,814   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T14:41:19,814   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T14:41:19,815   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T14:41:19,815   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T14:41:19,816   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T14:41:19,816   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T14:41:19,817   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T14:41:19,817   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T14:41:19,818   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T14:41:19,818   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T14:41:19,819   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T14:41:19,819   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T14:41:19,819   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T14:41:19,820   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T14:41:19,820   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T14:41:19,821   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T14:41:19,821   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T14:41:19,821   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T14:41:19,822   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T14:41:19,822   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T14:41:19,823   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T14:41:19,823   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T14:41:19,823   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T14:41:19,824   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T14:41:19,824   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T14:41:19,825 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T14:41:19,849 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T14:41:19,870 Collecting biocode==0.3.1
2021-07-12T14:41:19,872   Created temporary directory: /tmp/pip-unpack-tuh97n8t
2021-07-12T14:41:20,065   Downloading biocode-0.3.1.tar.gz (151 kB)
2021-07-12T14:41:20,347   Added biocode==0.3.1 from https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 to build tracker '/tmp/pip-req-tracker-zjv5vq9c'
2021-07-12T14:41:20,348     Running setup.py (path:/tmp/pip-wheel-atfgk74z/biocode_e427ba33dba04c78854dfff3b7d33c53/setup.py) egg_info for package biocode
2021-07-12T14:41:20,349     Created temporary directory: /tmp/pip-pip-egg-info-s2ijc_z3
2021-07-12T14:41:20,349     Running command python setup.py egg_info
2021-07-12T14:41:21,358     /tmp/pip-wheel-atfgk74z/biocode_e427ba33dba04c78854dfff3b7d33c53/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T14:41:21,359       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T14:41:22,135     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T14:41:22,135       warnings.warn(msg)
2021-07-12T14:41:22,286     running egg_info
2021-07-12T14:41:22,288     creating /tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info
2021-07-12T14:41:22,289     writing /tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/PKG-INFO
2021-07-12T14:41:22,291     writing dependency_links to /tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/dependency_links.txt
2021-07-12T14:41:22,293     writing requirements to /tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/requires.txt
2021-07-12T14:41:22,294     writing top-level names to /tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/top_level.txt
2021-07-12T14:41:22,296     writing manifest file '/tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/SOURCES.txt'
2021-07-12T14:41:22,544     reading manifest file '/tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/SOURCES.txt'
2021-07-12T14:41:22,546     reading manifest template 'MANIFEST.in'
2021-07-12T14:41:22,547     warning: no files found matching 'biocode/README.rst'
2021-07-12T14:41:22,549     adding license file 'LICENSE'
2021-07-12T14:41:22,555     writing manifest file '/tmp/pip-pip-egg-info-s2ijc_z3/biocode.egg-info/SOURCES.txt'
2021-07-12T14:41:22,645   Source in /tmp/pip-wheel-atfgk74z/biocode_e427ba33dba04c78854dfff3b7d33c53 has version 0.3.1, which satisfies requirement biocode==0.3.1 from https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20
2021-07-12T14:41:22,646   Removed biocode==0.3.1 from https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 from build tracker '/tmp/pip-req-tracker-zjv5vq9c'
2021-07-12T14:41:22,651 Created temporary directory: /tmp/pip-unpack-sf3uspq9
2021-07-12T14:41:22,651 Building wheels for collected packages: biocode
2021-07-12T14:41:22,655   Created temporary directory: /tmp/pip-wheel-3v92q4hq
2021-07-12T14:41:22,656   Building wheel for biocode (setup.py): started
2021-07-12T14:41:22,656   Destination directory: /tmp/pip-wheel-3v92q4hq
2021-07-12T14:41:22,656   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-atfgk74z/biocode_e427ba33dba04c78854dfff3b7d33c53/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-atfgk74z/biocode_e427ba33dba04c78854dfff3b7d33c53/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3v92q4hq
2021-07-12T14:41:23,665   /tmp/pip-wheel-atfgk74z/biocode_e427ba33dba04c78854dfff3b7d33c53/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T14:41:23,665     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T14:41:23,900   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T14:41:23,901     warnings.warn(msg)
2021-07-12T14:41:24,066   running bdist_wheel
2021-07-12T14:41:24,268   running build
2021-07-12T14:41:24,268   running build_py
2021-07-12T14:41:24,417   creating build
2021-07-12T14:41:24,418   creating build/lib
2021-07-12T14:41:24,419   creating build/lib/biocode
2021-07-12T14:41:24,420   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T14:41:24,422   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T14:41:24,425   copying biocode/things.py -> build/lib/biocode
2021-07-12T14:41:24,428   copying biocode/gff.py -> build/lib/biocode
2021-07-12T14:41:24,432   copying biocode/utils.py -> build/lib/biocode
2021-07-12T14:41:24,434   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T14:41:24,437   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T14:41:24,439   running egg_info
2021-07-12T14:41:24,455   writing biocode.egg-info/PKG-INFO
2021-07-12T14:41:24,457   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T14:41:24,459   writing requirements to biocode.egg-info/requires.txt
2021-07-12T14:41:24,461   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T14:41:24,513   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T14:41:24,517   reading manifest template 'MANIFEST.in'
2021-07-12T14:41:24,519   warning: no files found matching 'biocode/README.rst'
2021-07-12T14:41:24,520   adding license file 'LICENSE'
2021-07-12T14:41:24,528   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T14:41:24,533   creating build/lib/biocode/data
2021-07-12T14:41:24,534   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T14:41:24,539   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T14:41:24,541   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T14:41:24,543   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T14:41:24,548   running build_scripts
2021-07-12T14:41:24,548   creating build/scripts-3.9
2021-07-12T14:41:24,550   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T14:41:24,552   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T14:41:24,554   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T14:41:24,557   copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.9
2021-07-12T14:41:24,559   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T14:41:24,562   copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.9
2021-07-12T14:41:24,564   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T14:41:24,566   copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.9
2021-07-12T14:41:24,569   copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.9
2021-07-12T14:41:24,571   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,574   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T14:41:24,576   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.9
2021-07-12T14:41:24,578   copying and adjusting bin/remove_duplicate_sequences.py -> build/scripts-3.9
2021-07-12T14:41:24,580   copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.9
2021-07-12T14:41:24,583   copying and adjusting bin/report_or_replace_nonstandard_residues.py -> build/scripts-3.9
2021-07-12T14:41:24,585   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,588   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T14:41:24,590   copying and adjusting bin/report_basic_gff_model_agreement.py -> build/scripts-3.9
2021-07-12T14:41:24,592   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
2021-07-12T14:41:24,594   copying and adjusting bin/split_fasta_into_even_files.py -> build/scripts-3.9
2021-07-12T14:41:24,596   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T14:41:24,598   copying and adjusting bin/filter_gff3_by_id_list.py -> build/scripts-3.9
2021-07-12T14:41:24,600   copying and adjusting bin/randomly_subsample_fastq.py -> build/scripts-3.9
2021-07-12T14:41:24,603   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,606   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T14:41:24,608   copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.9
2021-07-12T14:41:24,610   copying and adjusting bin/convert_genbank_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,613   copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.9
2021-07-12T14:41:24,615   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.9
2021-07-12T14:41:24,617   copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.9
2021-07-12T14:41:24,620   copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.9
2021-07-12T14:41:24,622   copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.9
2021-07-12T14:41:24,625   copying and adjusting bin/compare_gene_structures.py -> build/scripts-3.9
2021-07-12T14:41:24,629   copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,631   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T14:41:24,633   copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.9
2021-07-12T14:41:24,636   copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.9
2021-07-12T14:41:24,638   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,640   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T14:41:24,642   copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.9
2021-07-12T14:41:24,644   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T14:41:24,647   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T14:41:24,649   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.9
2021-07-12T14:41:24,651   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T14:41:24,653   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,656   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.9
2021-07-12T14:41:24,658   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.9
2021-07-12T14:41:24,660   copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.9
2021-07-12T14:41:24,663   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,665   copying and adjusting bin/check_gff_for_internal_stops.py -> build/scripts-3.9
2021-07-12T14:41:24,667   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T14:41:24,670   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
2021-07-12T14:41:24,672   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
2021-07-12T14:41:24,674   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,676   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T14:41:24,679   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,681   copying and adjusting bin/fasta_size_distribution_plot.py -> build/scripts-3.9
2021-07-12T14:41:24,683   copying and adjusting bin/merge_bam_files.py -> build/scripts-3.9
2021-07-12T14:41:24,685   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T14:41:24,688   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T14:41:24,690   copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.9
2021-07-12T14:41:24,692   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T14:41:24,694   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
2021-07-12T14:41:24,696   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T14:41:24,699   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T14:41:24,701   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T14:41:24,703   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T14:41:24,705   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T14:41:24,708   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T14:41:24,710   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T14:41:24,712   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
2021-07-12T14:41:24,714   copying and adjusting bin/calculate_query_coverage_by_blast.py -> build/scripts-3.9
2021-07-12T14:41:24,717   copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.9
2021-07-12T14:41:24,719   copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.9
2021-07-12T14:41:24,721   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.9
2021-07-12T14:41:24,723   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T14:41:24,725   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T14:41:24,728   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T14:41:24,730   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T14:41:24,731   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T14:41:24,734   copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.9
2021-07-12T14:41:24,736   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.9
2021-07-12T14:41:24,737   changing mode of build/scripts-3.9/filter_fastq_by_N_content.py from 644 to 755
2021-07-12T14:41:24,738   changing mode of build/scripts-3.9/convert_fastq_to_fasta.py from 644 to 755
2021-07-12T14:41:24,738   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
2021-07-12T14:41:24,739   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T14:41:24,740   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T14:41:24,740   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T14:41:24,741   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T14:41:24,741   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T14:41:24,742   changing mode of build/scripts-3.9/hmmlib_to_sqlite3.py from 644 to 755
2021-07-12T14:41:24,743   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T14:41:24,743   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T14:41:24,744   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T14:41:24,744   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T14:41:24,745   changing mode of build/scripts-3.9/create_taxonomy_db.py from 644 to 755
2021-07-12T14:41:24,746   changing mode of build/scripts-3.9/report_or_replace_nonstandard_residues.py from 644 to 755
2021-07-12T14:41:24,746   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T14:41:24,747   changing mode of build/scripts-3.9/validate_feature_boundaries_on_molecules.py from 644 to 755
2021-07-12T14:41:24,747   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
2021-07-12T14:41:24,748   changing mode of build/scripts-3.9/make_cufflinks_ids_unique.py from 644 to 755
2021-07-12T14:41:24,749   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T14:41:24,749   changing mode of build/scripts-3.9/remove_duplicate_features.py from 644 to 755
2021-07-12T14:41:24,750   changing mode of build/scripts-3.9/filter_gff3_by_id_list.py from 644 to 755
2021-07-12T14:41:24,750   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T14:41:24,751   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T14:41:24,752   changing mode of build/scripts-3.9/write_fasta_from_gff.py from 644 to 755
2021-07-12T14:41:24,752   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T14:41:24,753   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T14:41:24,753   changing mode of build/scripts-3.9/get_mpilup_from_id_list.py from 644 to 755
2021-07-12T14:41:24,754   changing mode of build/scripts-3.9/uniprot_sprot_to_sqlite3.py from 644 to 755
2021-07-12T14:41:24,755   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T14:41:24,755   changing mode of build/scripts-3.9/split_interleaved_sequence_file.py from 644 to 755
2021-07-12T14:41:24,756   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T14:41:24,756   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T14:41:24,757   changing mode of build/scripts-3.9/convert_augustus_to_gff3.py from 644 to 755
2021-07-12T14:41:24,758   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
2021-07-12T14:41:24,758   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
2021-07-12T14:41:24,759   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T14:41:24,760   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T14:41:24,760   changing mode of build/scripts-3.9/interleave_fastq.py from 644 to 755
2021-07-12T14:41:24,761   changing mode of build/scripts-3.9/tigrfam_info_to_sqlite3.py from 644 to 755
2021-07-12T14:41:24,761   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T14:41:24,762   changing mode of build/scripts-3.9/convert_pasa_gff_to_models.py from 644 to 755
2021-07-12T14:41:24,762   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
2021-07-12T14:41:24,763   changing mode of build/scripts-3.9/merge_masked_fasta_files.py from 644 to 755
2021-07-12T14:41:24,763   changing mode of build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py from 644 to 755
2021-07-12T14:41:24,764   changing mode of build/scripts-3.9/update_selected_column9_values.py from 644 to 755
2021-07-12T14:41:24,765   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
2021-07-12T14:41:24,765   changing mode of build/scripts-3.9/make_go_slim_index.py from 644 to 755
2021-07-12T14:41:24,766   changing mode of build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py from 644 to 755
2021-07-12T14:41:24,766   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T14:41:24,767   changing mode of build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py from 644 to 755
2021-07-12T14:41:24,767   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T14:41:24,768   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T14:41:24,769   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T14:41:24,769   changing mode of build/scripts-3.9/report_gff3_statistics.py from 644 to 755
2021-07-12T14:41:24,770   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T14:41:24,770   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T14:41:24,771   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T14:41:24,771   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
2021-07-12T14:41:24,772   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T14:41:24,772   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T14:41:24,773   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
2021-07-12T14:41:24,773   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T14:41:24,773   changing mode of build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py from 644 to 755
2021-07-12T14:41:24,774   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
2021-07-12T14:41:24,774   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T14:41:24,775   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T14:41:24,775   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T14:41:24,776   changing mode of build/scripts-3.9/reformat_fasta_residue_lengths.py from 644 to 755
2021-07-12T14:41:24,776   changing mode of build/scripts-3.9/select_training_and_evaluation_transcripts.py from 644 to 755
2021-07-12T14:41:24,776   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
2021-07-12T14:41:24,777   changing mode of build/scripts-3.9/calculate_query_coverage_by_blast.py from 644 to 755
2021-07-12T14:41:24,777   changing mode of build/scripts-3.9/convert_gff3_to_ncbi_tbl.py from 644 to 755
2021-07-12T14:41:24,778   changing mode of build/scripts-3.9/filter_fasta_by_type.py from 644 to 755
2021-07-12T14:41:24,778   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T14:41:24,779   changing mode of build/scripts-3.9/create_rsem_html_table.py from 644 to 755
2021-07-12T14:41:24,779   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
2021-07-12T14:41:24,780   changing mode of build/scripts-3.9/set_source_column.py from 644 to 755
2021-07-12T14:41:24,780   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T14:41:24,781   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T14:41:24,781   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
2021-07-12T14:41:24,782   changing mode of build/scripts-3.9/append_to_column_9_value.py from 644 to 755
2021-07-12T14:41:24,790   installing to build/bdist.linux-armv7l/wheel
2021-07-12T14:41:24,790   running install
2021-07-12T14:41:24,792   running install_lib
2021-07-12T14:41:24,798   creating build/bdist.linux-armv7l
2021-07-12T14:41:24,798   creating build/bdist.linux-armv7l/wheel
2021-07-12T14:41:24,800   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,802   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,804   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T14:41:24,805   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T14:41:24,810   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T14:41:24,812   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T14:41:24,814   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T14:41:24,817   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,820   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,824   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,828   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,831   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,834   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T14:41:24,836   running install_egg_info
2021-07-12T14:41:24,843   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.3.1-py3.9.egg-info
2021-07-12T14:41:24,859   running install_scripts
2021-07-12T14:41:24,897   creating build/bdist.linux-armv7l/wheel/biocode-0.3.1.data
2021-07-12T14:41:24,898   creating build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,899   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,902   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,905   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,907   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,909   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,912   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,914   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,916   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,919   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,922   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,925   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,927   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,929   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,931   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,934   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,936   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,940   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,942   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,944   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,946   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,949   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,952   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,955   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,957   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,960   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,962   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,964   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,966   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,969   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,972   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,975   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,978   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,981   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,983   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,985   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,989   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,991   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,994   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,996   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:24,999   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,001   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,004   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,006   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,009   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,012   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,015   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,018   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,020   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,023   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,025   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,027   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,030   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,033   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,035   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,037   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,040   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,042   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,045   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,047   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,050   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,052   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,054   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,056   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,058   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,061   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,063   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,065   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,068   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,070   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,072   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,075   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,078   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,080   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,083   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,085   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,087   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,089   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,091   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,094   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,097   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,100   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,102   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts
2021-07-12T14:41:25,104   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
2021-07-12T14:41:25,104   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/create_taxonomic_profile_from_blast.py to 755
2021-07-12T14:41:25,105   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/report_coverage_gaps.py to 755
2021-07-12T14:41:25,105   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/report_basic_gff_model_agreement.py to 755
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2021-07-12T14:41:25,107   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/reorient_sequences_by_id.py to 755
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2021-07-12T14:41:25,109   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/subsample_fasta.py to 755
2021-07-12T14:41:25,109   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T14:41:25,109   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755
2021-07-12T14:41:25,109   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/mark_partial_genes.py to 755
2021-07-12T14:41:25,110   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/remove_duplicate_features.py to 755
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2021-07-12T14:41:25,111   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/fastq_simple_stats.py to 755
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2021-07-12T14:41:25,112   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/filter_fastq_by_N_content.py to 755
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2021-07-12T14:41:25,115   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/remove_orphaned_features.py to 755
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2021-07-12T14:41:25,119   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T14:41:25,119   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/remove_masked_gene_models.py to 755
2021-07-12T14:41:25,120   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_prodigal_to_gff3.py to 755
2021-07-12T14:41:25,120   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/prepend_to_fasta_header.py to 755
2021-07-12T14:41:25,120   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_augustus_to_gff3.py to 755
2021-07-12T14:41:25,121   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/merge_bam_files.py to 755
2021-07-12T14:41:25,121   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_scipio_gff_to_gff3.py to 755
2021-07-12T14:41:25,121   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/replace_gff_type_column_value.py to 755
2021-07-12T14:41:25,122   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_fasta_contigs_to_gff3.py to 755
2021-07-12T14:41:25,122   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/get_mpilup_from_id_list.py to 755
2021-07-12T14:41:25,122   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/filter_fasta_by_header_regex.py to 755
2021-07-12T14:41:25,123   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T14:41:25,123   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/report_or_replace_nonstandard_residues.py to 755
2021-07-12T14:41:25,123   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/interleave_fastq.py to 755
2021-07-12T14:41:25,124   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/make_cufflinks_ids_unique.py to 755
2021-07-12T14:41:25,124   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T14:41:25,124   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/split_isoforms_into_individual_genes.py to 755
2021-07-12T14:41:25,125   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/append_to_fasta_header.py to 755
2021-07-12T14:41:25,125   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T14:41:25,125   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/detect_inverted_repeats.py to 755
2021-07-12T14:41:25,126   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T14:41:25,126   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T14:41:25,126   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T14:41:25,127   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/create_rsem_html_table.py to 755
2021-07-12T14:41:25,127   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755
2021-07-12T14:41:25,128   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/reformat_fasta_residue_lengths.py to 755
2021-07-12T14:41:25,128   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/calculate_query_coverage_by_blast.py to 755
2021-07-12T14:41:25,128   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/uniref_to_sqlite3.py to 755
2021-07-12T14:41:25,128   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/split_interleaved_sequence_file.py to 755
2021-07-12T14:41:25,129   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T14:41:25,129   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.3.1.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T14:41:25,154   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T14:41:25,160   creating build/bdist.linux-armv7l/wheel/biocode-0.3.1.dist-info/WHEEL
2021-07-12T14:41:25,163   creating '/tmp/pip-wheel-3v92q4hq/biocode-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T14:41:25,166   adding 'biocode/__init__.py'
2021-07-12T14:41:25,168   adding 'biocode/annotation.py'
2021-07-12T14:41:25,171   adding 'biocode/genbank.py'
2021-07-12T14:41:25,176   adding 'biocode/gff.py'
2021-07-12T14:41:25,179   adding 'biocode/tbl.py'
2021-07-12T14:41:25,188   adding 'biocode/things.py'
2021-07-12T14:41:25,190   adding 'biocode/utils.py'
2021-07-12T14:41:25,197   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T14:41:25,199   adding 'biocode/data/__init__.py'
2021-07-12T14:41:25,201   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T14:41:25,203   adding 'biocode/data/rsem_html_table.template'
2021-07-12T14:41:25,208   adding 'biocode-0.3.1.data/scripts/add_gff3_locus_tags.py'
2021-07-12T14:41:25,210   adding 'biocode-0.3.1.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T14:41:25,212   adding 'biocode-0.3.1.data/scripts/append_to_column_9_value.py'
2021-07-12T14:41:25,213   adding 'biocode-0.3.1.data/scripts/append_to_fasta_header.py'
2021-07-12T14:41:25,215   adding 'biocode-0.3.1.data/scripts/append_to_fastq_read_header.py'
2021-07-12T14:41:25,217   adding 'biocode-0.3.1.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T14:41:25,218   adding 'biocode-0.3.1.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T14:41:25,220   adding 'biocode-0.3.1.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T14:41:25,222   adding 'biocode-0.3.1.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T14:41:25,226   adding 'biocode-0.3.1.data/scripts/compare_gene_structures.py'
2021-07-12T14:41:25,229   adding 'biocode-0.3.1.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T14:41:25,231   adding 'biocode-0.3.1.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T14:41:25,234   adding 'biocode-0.3.1.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T14:41:25,236   adding 'biocode-0.3.1.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T14:41:25,238   adding 'biocode-0.3.1.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T14:41:25,239   adding 'biocode-0.3.1.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T14:41:25,241   adding 'biocode-0.3.1.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T14:41:25,243   adding 'biocode-0.3.1.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T14:41:25,245   adding 'biocode-0.3.1.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T14:41:25,247   adding 'biocode-0.3.1.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T14:41:25,249   adding 'biocode-0.3.1.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T14:41:25,251   adding 'biocode-0.3.1.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T14:41:25,253   adding 'biocode-0.3.1.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T14:41:25,255   adding 'biocode-0.3.1.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T14:41:25,257   adding 'biocode-0.3.1.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T14:41:25,259   adding 'biocode-0.3.1.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T14:41:25,261   adding 'biocode-0.3.1.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T14:41:25,262   adding 'biocode-0.3.1.data/scripts/create_rsem_html_table.py'
2021-07-12T14:41:25,264   adding 'biocode-0.3.1.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T14:41:25,267   adding 'biocode-0.3.1.data/scripts/create_taxonomy_db.py'
2021-07-12T14:41:25,269   adding 'biocode-0.3.1.data/scripts/detect_inverted_repeats.py'
2021-07-12T14:41:25,271   adding 'biocode-0.3.1.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T14:41:25,273   adding 'biocode-0.3.1.data/scripts/extend_genes_to_stops.py'
2021-07-12T14:41:25,274   adding 'biocode-0.3.1.data/scripts/extract_fasta_regions.py'
2021-07-12T14:41:25,276   adding 'biocode-0.3.1.data/scripts/fasta_base_content.py'
2021-07-12T14:41:25,278   adding 'biocode-0.3.1.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T14:41:25,279   adding 'biocode-0.3.1.data/scripts/fastq_simple_stats.py'
2021-07-12T14:41:25,281   adding 'biocode-0.3.1.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T14:41:25,283   adding 'biocode-0.3.1.data/scripts/filter_fasta_by_type.py'
2021-07-12T14:41:25,285   adding 'biocode-0.3.1.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T14:41:25,287   adding 'biocode-0.3.1.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T14:41:25,288   adding 'biocode-0.3.1.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T14:41:25,290   adding 'biocode-0.3.1.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T14:41:25,293   adding 'biocode-0.3.1.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T14:41:25,294   adding 'biocode-0.3.1.data/scripts/interleave_fasta.py'
2021-07-12T14:41:25,296   adding 'biocode-0.3.1.data/scripts/interleave_fastq.py'
2021-07-12T14:41:25,298   adding 'biocode-0.3.1.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T14:41:25,300   adding 'biocode-0.3.1.data/scripts/make_go_slim_index.py'
2021-07-12T14:41:25,302   adding 'biocode-0.3.1.data/scripts/mark_partial_genes.py'
2021-07-12T14:41:25,304   adding 'biocode-0.3.1.data/scripts/merge_bam_files.py'
2021-07-12T14:41:25,305   adding 'biocode-0.3.1.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T14:41:25,307   adding 'biocode-0.3.1.data/scripts/merge_masked_fasta_files.py'
2021-07-12T14:41:25,308   adding 'biocode-0.3.1.data/scripts/prepend_to_fasta_header.py'
2021-07-12T14:41:25,311   adding 'biocode-0.3.1.data/scripts/randomly_subsample_fastq.py'
2021-07-12T14:41:25,312   adding 'biocode-0.3.1.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T14:41:25,314   adding 'biocode-0.3.1.data/scripts/remove_duplicate_features.py'
2021-07-12T14:41:25,315   adding 'biocode-0.3.1.data/scripts/remove_duplicate_sequences.py'
2021-07-12T14:41:25,317   adding 'biocode-0.3.1.data/scripts/remove_masked_gene_models.py'
2021-07-12T14:41:25,319   adding 'biocode-0.3.1.data/scripts/remove_orphaned_features.py'
2021-07-12T14:41:25,321   adding 'biocode-0.3.1.data/scripts/reorient_sequences_by_id.py'
2021-07-12T14:41:25,322   adding 'biocode-0.3.1.data/scripts/replace_gff_type_column_value.py'
2021-07-12T14:41:25,324   adding 'biocode-0.3.1.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T14:41:25,326   adding 'biocode-0.3.1.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T14:41:25,328   adding 'biocode-0.3.1.data/scripts/report_coverage_gaps.py'
2021-07-12T14:41:25,330   adding 'biocode-0.3.1.data/scripts/report_gff3_statistics.py'
2021-07-12T14:41:25,332   adding 'biocode-0.3.1.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T14:41:25,334   adding 'biocode-0.3.1.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T14:41:25,336   adding 'biocode-0.3.1.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T14:41:25,338   adding 'biocode-0.3.1.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T14:41:25,339   adding 'biocode-0.3.1.data/scripts/set_source_column.py'
2021-07-12T14:41:25,341   adding 'biocode-0.3.1.data/scripts/split_fasta_into_even_files.py'
2021-07-12T14:41:25,343   adding 'biocode-0.3.1.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T14:41:25,345   adding 'biocode-0.3.1.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T14:41:25,346   adding 'biocode-0.3.1.data/scripts/split_molecules_on_gaps.py'
2021-07-12T14:41:25,348   adding 'biocode-0.3.1.data/scripts/subsample_fasta.py'
2021-07-12T14:41:25,350   adding 'biocode-0.3.1.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T14:41:25,352   adding 'biocode-0.3.1.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T14:41:25,354   adding 'biocode-0.3.1.data/scripts/uniref_to_sqlite3.py'
2021-07-12T14:41:25,356   adding 'biocode-0.3.1.data/scripts/update_selected_column9_values.py'
2021-07-12T14:41:25,359   adding 'biocode-0.3.1.data/scripts/validate_fasta.py'
2021-07-12T14:41:25,360   adding 'biocode-0.3.1.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T14:41:25,362   adding 'biocode-0.3.1.data/scripts/write_fasta_from_gff.py'
2021-07-12T14:41:25,365   adding 'biocode-0.3.1.dist-info/LICENSE'
2021-07-12T14:41:25,366   adding 'biocode-0.3.1.dist-info/METADATA'
2021-07-12T14:41:25,367   adding 'biocode-0.3.1.dist-info/WHEEL'
2021-07-12T14:41:25,369   adding 'biocode-0.3.1.dist-info/top_level.txt'
2021-07-12T14:41:25,371   adding 'biocode-0.3.1.dist-info/RECORD'
2021-07-12T14:41:25,380   removing build/bdist.linux-armv7l/wheel
2021-07-12T14:41:25,528   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T14:41:25,533   Created wheel for biocode: filename=biocode-0.3.1-py3-none-any.whl size=206004 sha256=da177825df75c57e89f9af93b45c99d0d43e1bd1c9b98b20396d1f80ac764f09
2021-07-12T14:41:25,533   Stored in directory: /tmp/pip-ephem-wheel-cache-scnh3na1/wheels/41/00/7a/26dff1f250a7735f5355fbdd2285a0b26cb546c870cd599cf4
2021-07-12T14:41:25,548 Successfully built biocode
2021-07-12T14:41:25,560 Removed build tracker: '/tmp/pip-req-tracker-zjv5vq9c'