2021-07-12T15:27:33,781 Created temporary directory: /tmp/pip-ephem-wheel-cache-3co8rn3l
2021-07-12T15:27:33,784 Created temporary directory: /tmp/pip-req-tracker-7_xvm_yb
2021-07-12T15:27:33,784 Initialized build tracking at /tmp/pip-req-tracker-7_xvm_yb
2021-07-12T15:27:33,785 Created build tracker: /tmp/pip-req-tracker-7_xvm_yb
2021-07-12T15:27:33,785 Entered build tracker: /tmp/pip-req-tracker-7_xvm_yb
2021-07-12T15:27:33,786 Created temporary directory: /tmp/pip-wheel-y8_xrs84
2021-07-12T15:27:33,816 1 location(s) to search for versions of tredparse:
2021-07-12T15:27:33,816 * https://pypi.org/simple/tredparse/
2021-07-12T15:27:33,816 Fetching project page and analyzing links: https://pypi.org/simple/tredparse/
2021-07-12T15:27:33,817 Getting page https://pypi.org/simple/tredparse/
2021-07-12T15:27:33,818 Found index url https://pypi.org/simple
2021-07-12T15:27:33,910   Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 (from https://pypi.org/simple/tredparse/), version: 0.7.5
2021-07-12T15:27:33,910   Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 (from https://pypi.org/simple/tredparse/), version: 0.7.6
2021-07-12T15:27:33,910   Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz#sha256=1aa435d1679ccc2d821e33c2a38fc626bba88178961dd2c8ab8ef761cd3846fc (from https://pypi.org/simple/tredparse/), version: 0.7.7
2021-07-12T15:27:33,911   Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/), version: 0.7.8
2021-07-12T15:27:33,911 Skipping link: not a file: https://pypi.org/simple/tredparse/
2021-07-12T15:27:33,929 Given no hashes to check 1 links for project 'tredparse': discarding no candidates
2021-07-12T15:27:33,948 Collecting tredparse==0.7.6
2021-07-12T15:27:33,950   Created temporary directory: /tmp/pip-unpack-i6yvlugh
2021-07-12T15:27:34,199   Downloading tredparse-0.7.6.tar.gz (245 kB)
2021-07-12T15:27:34,340   Added tredparse==0.7.6 from https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 to build tracker '/tmp/pip-req-tracker-7_xvm_yb'
2021-07-12T15:27:34,341     Running setup.py (path:/tmp/pip-wheel-y8_xrs84/tredparse_4d5b358a7f554d3f8a15535b0d6ef172/setup.py) egg_info for package tredparse
2021-07-12T15:27:34,342     Created temporary directory: /tmp/pip-pip-egg-info-ngmf9_bf
2021-07-12T15:27:34,342     Running command python setup.py egg_info
2021-07-12T15:27:35,500     running egg_info
2021-07-12T15:27:35,502     creating /tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info
2021-07-12T15:27:35,503     writing /tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/PKG-INFO
2021-07-12T15:27:35,506     writing dependency_links to /tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/dependency_links.txt
2021-07-12T15:27:35,508     writing requirements to /tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/requires.txt
2021-07-12T15:27:35,509     writing top-level names to /tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/top_level.txt
2021-07-12T15:27:35,511     writing manifest file '/tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/SOURCES.txt'
2021-07-12T15:27:35,883     reading manifest file '/tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/SOURCES.txt'
2021-07-12T15:27:35,885     reading manifest template 'MANIFEST.in'
2021-07-12T15:27:35,891     adding license file 'LICENSE'
2021-07-12T15:27:35,895     writing manifest file '/tmp/pip-pip-egg-info-ngmf9_bf/tredparse.egg-info/SOURCES.txt'
2021-07-12T15:27:35,982   Source in /tmp/pip-wheel-y8_xrs84/tredparse_4d5b358a7f554d3f8a15535b0d6ef172 has version 0.7.6, which satisfies requirement tredparse==0.7.6 from https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514
2021-07-12T15:27:35,983   Removed tredparse==0.7.6 from https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 from build tracker '/tmp/pip-req-tracker-7_xvm_yb'
2021-07-12T15:27:35,991 Created temporary directory: /tmp/pip-unpack-4qquseho
2021-07-12T15:27:35,992 Building wheels for collected packages: tredparse
2021-07-12T15:27:35,996   Created temporary directory: /tmp/pip-wheel-s559hrlh
2021-07-12T15:27:35,997   Building wheel for tredparse (setup.py): started
2021-07-12T15:27:35,997   Destination directory: /tmp/pip-wheel-s559hrlh
2021-07-12T15:27:35,997   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-y8_xrs84/tredparse_4d5b358a7f554d3f8a15535b0d6ef172/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-y8_xrs84/tredparse_4d5b358a7f554d3f8a15535b0d6ef172/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-s559hrlh
2021-07-12T15:27:37,178   running bdist_wheel
2021-07-12T15:27:37,342   running build
2021-07-12T15:27:37,342   running build_py
2021-07-12T15:27:37,483   creating build
2021-07-12T15:27:37,483   creating build/lib.linux-armv7l-3.9
2021-07-12T15:27:37,484   creating build/lib.linux-armv7l-3.9/ssw
2021-07-12T15:27:37,485   copying src/__init__.py -> build/lib.linux-armv7l-3.9/ssw
2021-07-12T15:27:37,487   copying src/ssw_wrap.py -> build/lib.linux-armv7l-3.9/ssw
2021-07-12T15:27:37,491   creating build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,492   copying tredparse/jcvi.py -> build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,495   copying tredparse/utils.py -> build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,497   copying tredparse/meta.py -> build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,499   copying tredparse/__init__.py -> build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,500   copying tredparse/bam_parser.py -> build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,503   copying tredparse/models.py -> build/lib.linux-armv7l-3.9/tredparse
2021-07-12T15:27:37,506   running egg_info
2021-07-12T15:27:37,523   writing tredparse.egg-info/PKG-INFO
2021-07-12T15:27:37,525   writing dependency_links to tredparse.egg-info/dependency_links.txt
2021-07-12T15:27:37,527   writing requirements to tredparse.egg-info/requires.txt
2021-07-12T15:27:37,528   writing top-level names to tredparse.egg-info/top_level.txt
2021-07-12T15:27:37,564   reading manifest file 'tredparse.egg-info/SOURCES.txt'
2021-07-12T15:27:37,567   reading manifest template 'MANIFEST.in'
2021-07-12T15:27:37,572   adding license file 'LICENSE'
2021-07-12T15:27:37,576   writing manifest file 'tredparse.egg-info/SOURCES.txt'
2021-07-12T15:27:37,581   creating build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,582   copying tredparse/data/HLI_bams.csv.gz -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,589   copying tredparse/data/TREDs.alts.csv -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,594   copying tredparse/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,597   copying tredparse/data/chrY.hg19.unique_ccn.gc -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,600   copying tredparse/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,603   copying tredparse/data/illumina_v3.pcrfree.stepmodel -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,605   copying tredparse/data/illumina_v3.pcrfree.stuttermodel -> build/lib.linux-armv7l-3.9/tredparse/data
2021-07-12T15:27:37,607   copying src/ssw.c -> build/lib.linux-armv7l-3.9/ssw
2021-07-12T15:27:37,611   copying src/ssw.h -> build/lib.linux-armv7l-3.9/ssw
2021-07-12T15:27:37,616   running build_ext
2021-07-12T15:27:37,622   building 'libssw' extension
2021-07-12T15:27:37,623   creating build/temp.linux-armv7l-3.9
2021-07-12T15:27:37,623   creating build/temp.linux-armv7l-3.9/src
2021-07-12T15:27:37,624   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/ssw.c -o build/temp.linux-armv7l-3.9/src/ssw.o
2021-07-12T15:27:37,684   src/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2021-07-12T15:27:37,684      38 | #include <emmintrin.h>
2021-07-12T15:27:37,684         |          ^~~~~~~~~~~~~
2021-07-12T15:27:37,684   compilation terminated.
2021-07-12T15:27:37,688   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-12T15:27:37,775   Building wheel for tredparse (setup.py): finished with status 'error'
2021-07-12T15:27:37,775   ERROR: Failed building wheel for tredparse
2021-07-12T15:27:37,776   Running setup.py clean for tredparse
2021-07-12T15:27:37,776   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-y8_xrs84/tredparse_4d5b358a7f554d3f8a15535b0d6ef172/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-y8_xrs84/tredparse_4d5b358a7f554d3f8a15535b0d6ef172/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-12T15:27:38,907   running clean
2021-07-12T15:27:38,910   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-12T15:27:38,912   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-12T15:27:38,920   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-12T15:27:38,920   'build/scripts-3.9' does not exist -- can't clean it
2021-07-12T15:27:38,920   removing 'build'
2021-07-12T15:27:38,980 Failed to build tredparse
2021-07-12T15:27:38,980 ERROR: Failed to build one or more wheels
2021-07-12T15:27:38,981 Exception information:
2021-07-12T15:27:38,981 Traceback (most recent call last):
2021-07-12T15:27:38,981   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-12T15:27:38,981     status = self.run(options, args)
2021-07-12T15:27:38,981   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-12T15:27:38,981     return func(self, options, args)
2021-07-12T15:27:38,981   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-12T15:27:38,981     raise CommandError(
2021-07-12T15:27:38,981 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-12T15:27:38,984 Removed build tracker: '/tmp/pip-req-tracker-7_xvm_yb'