2021-07-12T15:39:38,240 Created temporary directory: /tmp/pip-ephem-wheel-cache-8bl8tk1d
2021-07-12T15:39:38,243 Created temporary directory: /tmp/pip-req-tracker-i24vid9o
2021-07-12T15:39:38,244 Initialized build tracking at /tmp/pip-req-tracker-i24vid9o
2021-07-12T15:39:38,244 Created build tracker: /tmp/pip-req-tracker-i24vid9o
2021-07-12T15:39:38,244 Entered build tracker: /tmp/pip-req-tracker-i24vid9o
2021-07-12T15:39:38,245 Created temporary directory: /tmp/pip-wheel-fez4lza4
2021-07-12T15:39:38,274 1 location(s) to search for versions of biocode:
2021-07-12T15:39:38,274 * https://pypi.org/simple/biocode/
2021-07-12T15:39:38,274 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T15:39:38,275 Getting page https://pypi.org/simple/biocode/
2021-07-12T15:39:38,276 Found index url https://pypi.org/simple
2021-07-12T15:39:38,374   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T15:39:38,374   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T15:39:38,374   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T15:39:38,375   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T15:39:38,375   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T15:39:38,375   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T15:39:38,376   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T15:39:38,376   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T15:39:38,376   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T15:39:38,376   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T15:39:38,377   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T15:39:38,377   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T15:39:38,377   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T15:39:38,378   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T15:39:38,378   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T15:39:38,378   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T15:39:38,378   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T15:39:38,379   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T15:39:38,379   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T15:39:38,379   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T15:39:38,379   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T15:39:38,380   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T15:39:38,380   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T15:39:38,380   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T15:39:38,381   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T15:39:38,381 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T15:39:38,402 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T15:39:38,421 Collecting biocode==0.4.0
2021-07-12T15:39:38,422   Created temporary directory: /tmp/pip-unpack-96ryr09v
2021-07-12T15:39:38,641   Downloading biocode-0.4.0.tar.gz (154 kB)
2021-07-12T15:39:38,925   Added biocode==0.4.0 from https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 to build tracker '/tmp/pip-req-tracker-i24vid9o'
2021-07-12T15:39:38,926     Running setup.py (path:/tmp/pip-wheel-fez4lza4/biocode_f40f1629f1c14b0ea2bca5daacbcb48c/setup.py) egg_info for package biocode
2021-07-12T15:39:38,927     Created temporary directory: /tmp/pip-pip-egg-info-xkeco1w9
2021-07-12T15:39:38,927     Running command python setup.py egg_info
2021-07-12T15:39:39,811     /tmp/pip-wheel-fez4lza4/biocode_f40f1629f1c14b0ea2bca5daacbcb48c/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T15:39:39,812       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T15:39:40,035     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T15:39:40,035       warnings.warn(msg)
2021-07-12T15:39:40,142     running egg_info
2021-07-12T15:39:40,144     creating /tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info
2021-07-12T15:39:40,145     writing /tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/PKG-INFO
2021-07-12T15:39:40,148     writing dependency_links to /tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/dependency_links.txt
2021-07-12T15:39:40,150     writing requirements to /tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/requires.txt
2021-07-12T15:39:40,151     writing top-level names to /tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/top_level.txt
2021-07-12T15:39:40,152     writing manifest file '/tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/SOURCES.txt'
2021-07-12T15:39:40,303     reading manifest file '/tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/SOURCES.txt'
2021-07-12T15:39:40,305     reading manifest template 'MANIFEST.in'
2021-07-12T15:39:40,306     warning: no files found matching 'biocode/README.rst'
2021-07-12T15:39:40,307     adding license file 'LICENSE'
2021-07-12T15:39:40,312     writing manifest file '/tmp/pip-pip-egg-info-xkeco1w9/biocode.egg-info/SOURCES.txt'
2021-07-12T15:39:40,387   Source in /tmp/pip-wheel-fez4lza4/biocode_f40f1629f1c14b0ea2bca5daacbcb48c has version 0.4.0, which satisfies requirement biocode==0.4.0 from https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8
2021-07-12T15:39:40,388   Removed biocode==0.4.0 from https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 from build tracker '/tmp/pip-req-tracker-i24vid9o'
2021-07-12T15:39:40,392 Created temporary directory: /tmp/pip-unpack-dgl6oevv
2021-07-12T15:39:40,392 Building wheels for collected packages: biocode
2021-07-12T15:39:40,396   Created temporary directory: /tmp/pip-wheel-oa3mxnim
2021-07-12T15:39:40,397   Building wheel for biocode (setup.py): started
2021-07-12T15:39:40,397   Destination directory: /tmp/pip-wheel-oa3mxnim
2021-07-12T15:39:40,397   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-fez4lza4/biocode_f40f1629f1c14b0ea2bca5daacbcb48c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-fez4lza4/biocode_f40f1629f1c14b0ea2bca5daacbcb48c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oa3mxnim
2021-07-12T15:39:41,243   /tmp/pip-wheel-fez4lza4/biocode_f40f1629f1c14b0ea2bca5daacbcb48c/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T15:39:41,244     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T15:39:41,471   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T15:39:41,471     warnings.warn(msg)
2021-07-12T15:39:41,597   running bdist_wheel
2021-07-12T15:39:41,772   running build
2021-07-12T15:39:41,772   running build_py
2021-07-12T15:39:41,912   creating build
2021-07-12T15:39:41,913   creating build/lib
2021-07-12T15:39:41,913   creating build/lib/biocode
2021-07-12T15:39:41,914   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T15:39:41,916   copying biocode/gff.py -> build/lib/biocode
2021-07-12T15:39:41,919   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T15:39:41,921   copying biocode/things.py -> build/lib/biocode
2021-07-12T15:39:41,925   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T15:39:41,927   copying biocode/utils.py -> build/lib/biocode
2021-07-12T15:39:41,929   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T15:39:41,930   running egg_info
2021-07-12T15:39:41,944   writing biocode.egg-info/PKG-INFO
2021-07-12T15:39:41,946   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T15:39:41,947   writing requirements to biocode.egg-info/requires.txt
2021-07-12T15:39:41,949   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T15:39:41,969   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T15:39:41,974   reading manifest template 'MANIFEST.in'
2021-07-12T15:39:41,974   warning: no files found matching 'biocode/README.rst'
2021-07-12T15:39:41,975   adding license file 'LICENSE'
2021-07-12T15:39:41,982   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T15:39:41,986   creating build/lib/biocode/data
2021-07-12T15:39:41,987   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T15:39:41,991   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T15:39:41,993   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T15:39:41,995   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T15:39:41,999   running build_scripts
2021-07-12T15:39:42,000   creating build/scripts-3.9
2021-07-12T15:39:42,000   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T15:39:42,003   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T15:39:42,004   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T15:39:42,007   copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.9
2021-07-12T15:39:42,008   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T15:39:42,010   copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.9
2021-07-12T15:39:42,012   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T15:39:42,014   copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.9
2021-07-12T15:39:42,016   copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.9
2021-07-12T15:39:42,018   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,020   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T15:39:42,022   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.9
2021-07-12T15:39:42,024   copying and adjusting bin/remove_duplicate_sequences.py -> build/scripts-3.9
2021-07-12T15:39:42,025   copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.9
2021-07-12T15:39:42,028   copying and adjusting bin/report_or_replace_nonstandard_residues.py -> build/scripts-3.9
2021-07-12T15:39:42,030   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,033   copying and adjusting bin/make_go_slim.py -> build/scripts-3.9
2021-07-12T15:39:42,036   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T15:39:42,037   copying and adjusting bin/report_basic_gff_model_agreement.py -> build/scripts-3.9
2021-07-12T15:39:42,039   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
2021-07-12T15:39:42,041   copying and adjusting bin/split_fasta_into_even_files.py -> build/scripts-3.9
2021-07-12T15:39:42,042   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T15:39:42,044   copying and adjusting bin/filter_gff3_by_id_list.py -> build/scripts-3.9
2021-07-12T15:39:42,046   copying and adjusting bin/randomly_subsample_fastq.py -> build/scripts-3.9
2021-07-12T15:39:42,048   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,051   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T15:39:42,053   copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.9
2021-07-12T15:39:42,054   copying and adjusting bin/convert_genbank_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,057   copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.9
2021-07-12T15:39:42,058   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.9
2021-07-12T15:39:42,060   copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.9
2021-07-12T15:39:42,063   copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.9
2021-07-12T15:39:42,065   copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.9
2021-07-12T15:39:42,067   copying and adjusting bin/compare_gene_structures.py -> build/scripts-3.9
2021-07-12T15:39:42,070   copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,072   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T15:39:42,074   copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.9
2021-07-12T15:39:42,076   copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.9
2021-07-12T15:39:42,078   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,080   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T15:39:42,081   copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.9
2021-07-12T15:39:42,083   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T15:39:42,085   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T15:39:42,087   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.9
2021-07-12T15:39:42,090   copying and adjusting bin/filter_uniref_by_repid.py -> build/scripts-3.9
2021-07-12T15:39:42,091   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T15:39:42,093   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,095   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.9
2021-07-12T15:39:42,097   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.9
2021-07-12T15:39:42,098   copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.9
2021-07-12T15:39:42,100   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,103   copying and adjusting bin/check_gff_for_internal_stops.py -> build/scripts-3.9
2021-07-12T15:39:42,104   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T15:39:42,106   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
2021-07-12T15:39:42,109   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
2021-07-12T15:39:42,111   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,113   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T15:39:42,115   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,117   copying and adjusting bin/fasta_size_distribution_plot.py -> build/scripts-3.9
2021-07-12T15:39:42,119   copying and adjusting bin/merge_bam_files.py -> build/scripts-3.9
2021-07-12T15:39:42,120   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T15:39:42,123   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T15:39:42,124   copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.9
2021-07-12T15:39:42,126   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T15:39:42,128   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
2021-07-12T15:39:42,130   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T15:39:42,132   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T15:39:42,133   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T15:39:42,136   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T15:39:42,138   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T15:39:42,140   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T15:39:42,142   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T15:39:42,144   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
2021-07-12T15:39:42,145   copying and adjusting bin/calculate_query_coverage_by_blast.py -> build/scripts-3.9
2021-07-12T15:39:42,147   copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.9
2021-07-12T15:39:42,149   copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.9
2021-07-12T15:39:42,151   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.9
2021-07-12T15:39:42,152   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T15:39:42,154   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T15:39:42,156   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T15:39:42,158   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T15:39:42,159   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T15:39:42,161   copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.9
2021-07-12T15:39:42,163   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.9
2021-07-12T15:39:42,164   changing mode of build/scripts-3.9/filter_fastq_by_N_content.py from 644 to 755
2021-07-12T15:39:42,164   changing mode of build/scripts-3.9/convert_fastq_to_fasta.py from 644 to 755
2021-07-12T15:39:42,165   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
2021-07-12T15:39:42,165   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T15:39:42,165   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T15:39:42,166   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T15:39:42,166   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T15:39:42,166   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T15:39:42,166   changing mode of build/scripts-3.9/hmmlib_to_sqlite3.py from 644 to 755
2021-07-12T15:39:42,167   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T15:39:42,167   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T15:39:42,167   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T15:39:42,168   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T15:39:42,168   changing mode of build/scripts-3.9/create_taxonomy_db.py from 644 to 755
2021-07-12T15:39:42,168   changing mode of build/scripts-3.9/report_or_replace_nonstandard_residues.py from 644 to 755
2021-07-12T15:39:42,169   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T15:39:42,169   changing mode of build/scripts-3.9/make_go_slim.py from 644 to 755
2021-07-12T15:39:42,169   changing mode of build/scripts-3.9/validate_feature_boundaries_on_molecules.py from 644 to 755
2021-07-12T15:39:42,169   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
2021-07-12T15:39:42,170   changing mode of build/scripts-3.9/make_cufflinks_ids_unique.py from 644 to 755
2021-07-12T15:39:42,170   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T15:39:42,170   changing mode of build/scripts-3.9/remove_duplicate_features.py from 644 to 755
2021-07-12T15:39:42,170   changing mode of build/scripts-3.9/filter_gff3_by_id_list.py from 644 to 755
2021-07-12T15:39:42,171   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T15:39:42,171   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T15:39:42,171   changing mode of build/scripts-3.9/write_fasta_from_gff.py from 644 to 755
2021-07-12T15:39:42,171   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T15:39:42,172   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T15:39:42,172   changing mode of build/scripts-3.9/get_mpilup_from_id_list.py from 644 to 755
2021-07-12T15:39:42,172   changing mode of build/scripts-3.9/uniprot_sprot_to_sqlite3.py from 644 to 755
2021-07-12T15:39:42,172   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T15:39:42,173   changing mode of build/scripts-3.9/split_interleaved_sequence_file.py from 644 to 755
2021-07-12T15:39:42,173   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T15:39:42,173   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T15:39:42,173   changing mode of build/scripts-3.9/convert_augustus_to_gff3.py from 644 to 755
2021-07-12T15:39:42,174   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
2021-07-12T15:39:42,174   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
2021-07-12T15:39:42,174   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T15:39:42,175   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T15:39:42,175   changing mode of build/scripts-3.9/interleave_fastq.py from 644 to 755
2021-07-12T15:39:42,175   changing mode of build/scripts-3.9/tigrfam_info_to_sqlite3.py from 644 to 755
2021-07-12T15:39:42,175   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T15:39:42,176   changing mode of build/scripts-3.9/convert_pasa_gff_to_models.py from 644 to 755
2021-07-12T15:39:42,176   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
2021-07-12T15:39:42,176   changing mode of build/scripts-3.9/filter_uniref_by_repid.py from 644 to 755
2021-07-12T15:39:42,176   changing mode of build/scripts-3.9/merge_masked_fasta_files.py from 644 to 755
2021-07-12T15:39:42,177   changing mode of build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py from 644 to 755
2021-07-12T15:39:42,177   changing mode of build/scripts-3.9/update_selected_column9_values.py from 644 to 755
2021-07-12T15:39:42,177   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
2021-07-12T15:39:42,178   changing mode of build/scripts-3.9/make_go_slim_index.py from 644 to 755
2021-07-12T15:39:42,178   changing mode of build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py from 644 to 755
2021-07-12T15:39:42,178   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T15:39:42,178   changing mode of build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py from 644 to 755
2021-07-12T15:39:42,179   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T15:39:42,179   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T15:39:42,179   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T15:39:42,180   changing mode of build/scripts-3.9/report_gff3_statistics.py from 644 to 755
2021-07-12T15:39:42,180   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T15:39:42,180   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T15:39:42,180   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T15:39:42,181   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
2021-07-12T15:39:42,181   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T15:39:42,181   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T15:39:42,181   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
2021-07-12T15:39:42,182   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T15:39:42,182   changing mode of build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py from 644 to 755
2021-07-12T15:39:42,182   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
2021-07-12T15:39:42,182   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T15:39:42,183   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T15:39:42,183   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T15:39:42,183   changing mode of build/scripts-3.9/reformat_fasta_residue_lengths.py from 644 to 755
2021-07-12T15:39:42,184   changing mode of build/scripts-3.9/select_training_and_evaluation_transcripts.py from 644 to 755
2021-07-12T15:39:42,184   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
2021-07-12T15:39:42,184   changing mode of build/scripts-3.9/calculate_query_coverage_by_blast.py from 644 to 755
2021-07-12T15:39:42,184   changing mode of build/scripts-3.9/convert_gff3_to_ncbi_tbl.py from 644 to 755
2021-07-12T15:39:42,185   changing mode of build/scripts-3.9/filter_fasta_by_type.py from 644 to 755
2021-07-12T15:39:42,185   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T15:39:42,185   changing mode of build/scripts-3.9/create_rsem_html_table.py from 644 to 755
2021-07-12T15:39:42,186   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
2021-07-12T15:39:42,186   changing mode of build/scripts-3.9/set_source_column.py from 644 to 755
2021-07-12T15:39:42,187   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T15:39:42,187   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T15:39:42,187   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
2021-07-12T15:39:42,187   changing mode of build/scripts-3.9/append_to_column_9_value.py from 644 to 755
2021-07-12T15:39:42,193   installing to build/bdist.linux-armv7l/wheel
2021-07-12T15:39:42,193   running install
2021-07-12T15:39:42,194   running install_lib
2021-07-12T15:39:42,197   creating build/bdist.linux-armv7l
2021-07-12T15:39:42,197   creating build/bdist.linux-armv7l/wheel
2021-07-12T15:39:42,199   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,200   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,202   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,205   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,208   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,211   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,214   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,217   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T15:39:42,218   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T15:39:42,221   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T15:39:42,225   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T15:39:42,227   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T15:39:42,229   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T15:39:42,230   running install_egg_info
2021-07-12T15:39:42,240   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.4.0-py3.9.egg-info
2021-07-12T15:39:42,254   running install_scripts
2021-07-12T15:39:42,285   creating build/bdist.linux-armv7l/wheel/biocode-0.4.0.data
2021-07-12T15:39:42,285   creating build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,286   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,289   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,291   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,293   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,295   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,298   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,300   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,302   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,304   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,306   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,308   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,310   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,313   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,315   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,317   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,320   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,322   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,324   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,327   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,329   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,331   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,334   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,336   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,338   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,341   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,343   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,345   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,348   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,350   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,352   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,355   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,357   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,360   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,362   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,364   copying build/scripts-3.9/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,367   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,369   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,371   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,373   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,375   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,377   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,380   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,383   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,385   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,387   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,390   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,393   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,395   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,398   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,401   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,408   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,411   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,413   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,415   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,417   copying build/scripts-3.9/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,419   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,422   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,425   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,427   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,429   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,431   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,434   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,436   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,438   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,440   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,443   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,445   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,447   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,450   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,452   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,454   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,456   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,459   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,461   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,463   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,465   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,467   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,469   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,471   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,473   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,476   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,479   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,482   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,484   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts
2021-07-12T15:39:42,486   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/validate_fasta.py to 755
2021-07-12T15:39:42,486   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/write_fasta_from_gff.py to 755
2021-07-12T15:39:42,487   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/uniref_to_sqlite3.py to 755
2021-07-12T15:39:42,487   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/make_cufflinks_ids_unique.py to 755
2021-07-12T15:39:42,488   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/filter_fastq_by_N_content.py to 755
2021-07-12T15:39:42,488   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/replace_homopolymeric_repeats_with_Ns.py to 755
2021-07-12T15:39:42,489   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/filter_uniref_by_taxonomy.py to 755
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2021-07-12T15:39:42,489   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/split_isoforms_into_individual_genes.py to 755
2021-07-12T15:39:42,489   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/create_rsem_html_table.py to 755
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2021-07-12T15:39:42,491   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/update_selected_column9_values.py to 755
2021-07-12T15:39:42,491   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T15:39:42,491   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/check_gff_for_internal_stops.py to 755
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2021-07-12T15:39:42,492   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/prepend_to_fasta_header.py to 755
2021-07-12T15:39:42,492   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/remove_duplicate_features.py to 755
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2021-07-12T15:39:42,493   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T15:39:42,493   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/detect_inverted_repeats.py to 755
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2021-07-12T15:39:42,495   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/extend_genes_to_stops.py to 755
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2021-07-12T15:39:42,500   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_augustus_to_gff3.py to 755
2021-07-12T15:39:42,500   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_scipio_gff_to_gff3.py to 755
2021-07-12T15:39:42,501   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/fastq_simple_stats.py to 755
2021-07-12T15:39:42,501   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/fasta_base_content.py to 755
2021-07-12T15:39:42,501   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/append_to_fastq_read_header.py to 755
2021-07-12T15:39:42,501   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/replace_gff_type_column_value.py to 755
2021-07-12T15:39:42,502   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/filter_uniref_by_repid.py to 755
2021-07-12T15:39:42,502   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/add_gff3_locus_tags.py to 755
2021-07-12T15:39:42,502   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/biothings_coordinate_comparisons.py to 755
2021-07-12T15:39:42,502   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/remove_orphaned_features.py to 755
2021-07-12T15:39:42,503   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/randomly_subsample_fastq.py to 755
2021-07-12T15:39:42,503   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/interleave_fasta.py to 755
2021-07-12T15:39:42,503   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755
2021-07-12T15:39:42,503   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/remove_masked_gene_models.py to 755
2021-07-12T15:39:42,504   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T15:39:42,504   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_pasa_gff_to_models.py to 755
2021-07-12T15:39:42,504   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_cufflinks_gtf_to_gff3.py to 755
2021-07-12T15:39:42,504   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/calculate_query_coverage_by_blast.py to 755
2021-07-12T15:39:42,505   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/merge_bam_files.py to 755
2021-07-12T15:39:42,505   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T15:39:42,505   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/report_basic_gff_model_agreement.py to 755
2021-07-12T15:39:42,506   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T15:39:42,506   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/get_mpilup_from_id_list.py to 755
2021-07-12T15:39:42,506   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T15:39:42,506   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
2021-07-12T15:39:42,507   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/make_go_slim_index.py to 755
2021-07-12T15:39:42,507   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/convert_gff3_to_ncbi_tbl.py to 755
2021-07-12T15:39:42,507   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T15:39:42,507   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T15:39:42,508   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T15:39:42,508   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755
2021-07-12T15:39:42,508   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T15:39:42,508   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/tigrfam_info_to_sqlite3.py to 755
2021-07-12T15:39:42,509   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/report_coverage_gaps.py to 755
2021-07-12T15:39:42,509   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/filter_fasta_by_header_regex.py to 755
2021-07-12T15:39:42,509   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.0.data/scripts/report_gff3_statistics.py to 755
2021-07-12T15:39:42,529   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T15:39:42,534   creating build/bdist.linux-armv7l/wheel/biocode-0.4.0.dist-info/WHEEL
2021-07-12T15:39:42,536   creating '/tmp/pip-wheel-oa3mxnim/biocode-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T15:39:42,539   adding 'biocode/__init__.py'
2021-07-12T15:39:42,541   adding 'biocode/annotation.py'
2021-07-12T15:39:42,543   adding 'biocode/genbank.py'
2021-07-12T15:39:42,548   adding 'biocode/gff.py'
2021-07-12T15:39:42,550   adding 'biocode/tbl.py'
2021-07-12T15:39:42,557   adding 'biocode/things.py'
2021-07-12T15:39:42,560   adding 'biocode/utils.py'
2021-07-12T15:39:42,565   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T15:39:42,567   adding 'biocode/data/__init__.py'
2021-07-12T15:39:42,568   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T15:39:42,570   adding 'biocode/data/rsem_html_table.template'
2021-07-12T15:39:42,575   adding 'biocode-0.4.0.data/scripts/add_gff3_locus_tags.py'
2021-07-12T15:39:42,576   adding 'biocode-0.4.0.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T15:39:42,578   adding 'biocode-0.4.0.data/scripts/append_to_column_9_value.py'
2021-07-12T15:39:42,579   adding 'biocode-0.4.0.data/scripts/append_to_fasta_header.py'
2021-07-12T15:39:42,580   adding 'biocode-0.4.0.data/scripts/append_to_fastq_read_header.py'
2021-07-12T15:39:42,582   adding 'biocode-0.4.0.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T15:39:42,583   adding 'biocode-0.4.0.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T15:39:42,584   adding 'biocode-0.4.0.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T15:39:42,586   adding 'biocode-0.4.0.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T15:39:42,589   adding 'biocode-0.4.0.data/scripts/compare_gene_structures.py'
2021-07-12T15:39:42,591   adding 'biocode-0.4.0.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T15:39:42,593   adding 'biocode-0.4.0.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T15:39:42,595   adding 'biocode-0.4.0.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T15:39:42,597   adding 'biocode-0.4.0.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T15:39:42,598   adding 'biocode-0.4.0.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T15:39:42,600   adding 'biocode-0.4.0.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T15:39:42,601   adding 'biocode-0.4.0.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T15:39:42,603   adding 'biocode-0.4.0.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T15:39:42,605   adding 'biocode-0.4.0.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T15:39:42,606   adding 'biocode-0.4.0.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T15:39:42,608   adding 'biocode-0.4.0.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T15:39:42,609   adding 'biocode-0.4.0.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T15:39:42,611   adding 'biocode-0.4.0.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T15:39:42,612   adding 'biocode-0.4.0.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T15:39:42,614   adding 'biocode-0.4.0.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T15:39:42,615   adding 'biocode-0.4.0.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T15:39:42,617   adding 'biocode-0.4.0.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T15:39:42,618   adding 'biocode-0.4.0.data/scripts/create_rsem_html_table.py'
2021-07-12T15:39:42,620   adding 'biocode-0.4.0.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T15:39:42,622   adding 'biocode-0.4.0.data/scripts/create_taxonomy_db.py'
2021-07-12T15:39:42,624   adding 'biocode-0.4.0.data/scripts/detect_inverted_repeats.py'
2021-07-12T15:39:42,625   adding 'biocode-0.4.0.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T15:39:42,627   adding 'biocode-0.4.0.data/scripts/extend_genes_to_stops.py'
2021-07-12T15:39:42,628   adding 'biocode-0.4.0.data/scripts/extract_fasta_regions.py'
2021-07-12T15:39:42,630   adding 'biocode-0.4.0.data/scripts/fasta_base_content.py'
2021-07-12T15:39:42,631   adding 'biocode-0.4.0.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T15:39:42,632   adding 'biocode-0.4.0.data/scripts/fastq_simple_stats.py'
2021-07-12T15:39:42,634   adding 'biocode-0.4.0.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T15:39:42,635   adding 'biocode-0.4.0.data/scripts/filter_fasta_by_type.py'
2021-07-12T15:39:42,637   adding 'biocode-0.4.0.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T15:39:42,638   adding 'biocode-0.4.0.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T15:39:42,639   adding 'biocode-0.4.0.data/scripts/filter_uniref_by_repid.py'
2021-07-12T15:39:42,641   adding 'biocode-0.4.0.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T15:39:42,642   adding 'biocode-0.4.0.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T15:39:42,644   adding 'biocode-0.4.0.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T15:39:42,645   adding 'biocode-0.4.0.data/scripts/interleave_fasta.py'
2021-07-12T15:39:42,646   adding 'biocode-0.4.0.data/scripts/interleave_fastq.py'
2021-07-12T15:39:42,648   adding 'biocode-0.4.0.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T15:39:42,649   adding 'biocode-0.4.0.data/scripts/make_go_slim.py'
2021-07-12T15:39:42,651   adding 'biocode-0.4.0.data/scripts/make_go_slim_index.py'
2021-07-12T15:39:42,653   adding 'biocode-0.4.0.data/scripts/mark_partial_genes.py'
2021-07-12T15:39:42,654   adding 'biocode-0.4.0.data/scripts/merge_bam_files.py'
2021-07-12T15:39:42,656   adding 'biocode-0.4.0.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T15:39:42,657   adding 'biocode-0.4.0.data/scripts/merge_masked_fasta_files.py'
2021-07-12T15:39:42,658   adding 'biocode-0.4.0.data/scripts/prepend_to_fasta_header.py'
2021-07-12T15:39:42,660   adding 'biocode-0.4.0.data/scripts/randomly_subsample_fastq.py'
2021-07-12T15:39:42,661   adding 'biocode-0.4.0.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T15:39:42,663   adding 'biocode-0.4.0.data/scripts/remove_duplicate_features.py'
2021-07-12T15:39:42,664   adding 'biocode-0.4.0.data/scripts/remove_duplicate_sequences.py'
2021-07-12T15:39:42,665   adding 'biocode-0.4.0.data/scripts/remove_masked_gene_models.py'
2021-07-12T15:39:42,666   adding 'biocode-0.4.0.data/scripts/remove_orphaned_features.py'
2021-07-12T15:39:42,668   adding 'biocode-0.4.0.data/scripts/reorient_sequences_by_id.py'
2021-07-12T15:39:42,669   adding 'biocode-0.4.0.data/scripts/replace_gff_type_column_value.py'
2021-07-12T15:39:42,670   adding 'biocode-0.4.0.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T15:39:42,672   adding 'biocode-0.4.0.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T15:39:42,673   adding 'biocode-0.4.0.data/scripts/report_coverage_gaps.py'
2021-07-12T15:39:42,675   adding 'biocode-0.4.0.data/scripts/report_gff3_statistics.py'
2021-07-12T15:39:42,677   adding 'biocode-0.4.0.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T15:39:42,678   adding 'biocode-0.4.0.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T15:39:42,680   adding 'biocode-0.4.0.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T15:39:42,681   adding 'biocode-0.4.0.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T15:39:42,682   adding 'biocode-0.4.0.data/scripts/set_source_column.py'
2021-07-12T15:39:42,684   adding 'biocode-0.4.0.data/scripts/split_fasta_into_even_files.py'
2021-07-12T15:39:42,685   adding 'biocode-0.4.0.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T15:39:42,686   adding 'biocode-0.4.0.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T15:39:42,688   adding 'biocode-0.4.0.data/scripts/split_molecules_on_gaps.py'
2021-07-12T15:39:42,689   adding 'biocode-0.4.0.data/scripts/subsample_fasta.py'
2021-07-12T15:39:42,691   adding 'biocode-0.4.0.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T15:39:42,692   adding 'biocode-0.4.0.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T15:39:42,694   adding 'biocode-0.4.0.data/scripts/uniref_to_sqlite3.py'
2021-07-12T15:39:42,696   adding 'biocode-0.4.0.data/scripts/update_selected_column9_values.py'
2021-07-12T15:39:42,697   adding 'biocode-0.4.0.data/scripts/validate_fasta.py'
2021-07-12T15:39:42,699   adding 'biocode-0.4.0.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T15:39:42,700   adding 'biocode-0.4.0.data/scripts/write_fasta_from_gff.py'
2021-07-12T15:39:42,703   adding 'biocode-0.4.0.dist-info/LICENSE'
2021-07-12T15:39:42,704   adding 'biocode-0.4.0.dist-info/METADATA'
2021-07-12T15:39:42,705   adding 'biocode-0.4.0.dist-info/WHEEL'
2021-07-12T15:39:42,705   adding 'biocode-0.4.0.dist-info/top_level.txt'
2021-07-12T15:39:42,708   adding 'biocode-0.4.0.dist-info/RECORD'
2021-07-12T15:39:42,715   removing build/bdist.linux-armv7l/wheel
2021-07-12T15:39:42,834   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T15:39:42,838   Created wheel for biocode: filename=biocode-0.4.0-py3-none-any.whl size=209929 sha256=c0167fa70e63b6ae969ba2a625bde0f55968889d65db61a195bccb8c7a36301e
2021-07-12T15:39:42,839   Stored in directory: /tmp/pip-ephem-wheel-cache-8bl8tk1d/wheels/07/87/43/776fec56fe9ab3eaae470dc77581baabf6ba11775270748261
2021-07-12T15:39:42,851 Successfully built biocode
2021-07-12T15:39:42,866 Removed build tracker: '/tmp/pip-req-tracker-i24vid9o'