2021-07-12T16:43:46,607 Created temporary directory: /tmp/pip-ephem-wheel-cache-7kkdciwn
2021-07-12T16:43:46,610 Created temporary directory: /tmp/pip-req-tracker-wzwvh4uh
2021-07-12T16:43:46,611 Initialized build tracking at /tmp/pip-req-tracker-wzwvh4uh
2021-07-12T16:43:46,611 Created build tracker: /tmp/pip-req-tracker-wzwvh4uh
2021-07-12T16:43:46,611 Entered build tracker: /tmp/pip-req-tracker-wzwvh4uh
2021-07-12T16:43:46,612 Created temporary directory: /tmp/pip-wheel-0gwj0_7w
2021-07-12T16:43:46,643 1 location(s) to search for versions of biocode:
2021-07-12T16:43:46,643 * https://pypi.org/simple/biocode/
2021-07-12T16:43:46,644 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T16:43:46,644 Getting page https://pypi.org/simple/biocode/
2021-07-12T16:43:46,646 Found index url https://pypi.org/simple
2021-07-12T16:43:46,750   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T16:43:46,751   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T16:43:46,751   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T16:43:46,751   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T16:43:46,752   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T16:43:46,752   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T16:43:46,753   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T16:43:46,753   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T16:43:46,754   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T16:43:46,754   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T16:43:46,754   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T16:43:46,755   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T16:43:46,755   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T16:43:46,756   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T16:43:46,756   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T16:43:46,757   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T16:43:46,757   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T16:43:46,757   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T16:43:46,758   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T16:43:46,758   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T16:43:46,759   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T16:43:46,759   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T16:43:46,760   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T16:43:46,760   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T16:43:46,760   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T16:43:46,761 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T16:43:46,784 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T16:43:46,805 Collecting biocode==0.4.1
2021-07-12T16:43:46,806   Created temporary directory: /tmp/pip-unpack-tauol71k
2021-07-12T16:43:47,146   Downloading biocode-0.4.1.tar.gz (154 kB)
2021-07-12T16:43:47,447   Added biocode==0.4.1 from https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 to build tracker '/tmp/pip-req-tracker-wzwvh4uh'
2021-07-12T16:43:47,449     Running setup.py (path:/tmp/pip-wheel-0gwj0_7w/biocode_08c960cb9be2449db498c4306ffa7c9f/setup.py) egg_info for package biocode
2021-07-12T16:43:47,449     Created temporary directory: /tmp/pip-pip-egg-info-lg4wiv0s
2021-07-12T16:43:47,450     Running command python setup.py egg_info
2021-07-12T16:43:48,379     /tmp/pip-wheel-0gwj0_7w/biocode_08c960cb9be2449db498c4306ffa7c9f/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T16:43:48,380       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T16:43:48,621     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T16:43:48,621       warnings.warn(msg)
2021-07-12T16:43:48,746     running egg_info
2021-07-12T16:43:48,749     creating /tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info
2021-07-12T16:43:48,750     writing /tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/PKG-INFO
2021-07-12T16:43:48,753     writing dependency_links to /tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/dependency_links.txt
2021-07-12T16:43:48,755     writing requirements to /tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/requires.txt
2021-07-12T16:43:48,756     writing top-level names to /tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/top_level.txt
2021-07-12T16:43:48,757     writing manifest file '/tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:48,923     reading manifest file '/tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:48,925     reading manifest template 'MANIFEST.in'
2021-07-12T16:43:48,926     warning: no files found matching 'biocode/README.rst'
2021-07-12T16:43:48,927     adding license file 'LICENSE'
2021-07-12T16:43:48,932     writing manifest file '/tmp/pip-pip-egg-info-lg4wiv0s/biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:49,017   Source in /tmp/pip-wheel-0gwj0_7w/biocode_08c960cb9be2449db498c4306ffa7c9f has version 0.4.1, which satisfies requirement biocode==0.4.1 from https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10
2021-07-12T16:43:49,018   Removed biocode==0.4.1 from https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 from build tracker '/tmp/pip-req-tracker-wzwvh4uh'
2021-07-12T16:43:49,023 Created temporary directory: /tmp/pip-unpack-qbhs05ug
2021-07-12T16:43:49,024 Building wheels for collected packages: biocode
2021-07-12T16:43:49,028   Created temporary directory: /tmp/pip-wheel-w0sdxd82
2021-07-12T16:43:49,029   Building wheel for biocode (setup.py): started
2021-07-12T16:43:49,029   Destination directory: /tmp/pip-wheel-w0sdxd82
2021-07-12T16:43:49,030   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0gwj0_7w/biocode_08c960cb9be2449db498c4306ffa7c9f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0gwj0_7w/biocode_08c960cb9be2449db498c4306ffa7c9f/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-w0sdxd82
2021-07-12T16:43:49,946   /tmp/pip-wheel-0gwj0_7w/biocode_08c960cb9be2449db498c4306ffa7c9f/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T16:43:49,947     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T16:43:50,175   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T16:43:50,175     warnings.warn(msg)
2021-07-12T16:43:50,323   running bdist_wheel
2021-07-12T16:43:50,517   running build
2021-07-12T16:43:50,517   running build_py
2021-07-12T16:43:50,666   creating build
2021-07-12T16:43:50,666   creating build/lib
2021-07-12T16:43:50,667   creating build/lib/biocode
2021-07-12T16:43:50,668   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T16:43:50,671   copying biocode/gff.py -> build/lib/biocode
2021-07-12T16:43:50,674   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T16:43:50,676   copying biocode/things.py -> build/lib/biocode
2021-07-12T16:43:50,680   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T16:43:50,682   copying biocode/utils.py -> build/lib/biocode
2021-07-12T16:43:50,685   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T16:43:50,686   running egg_info
2021-07-12T16:43:50,701   writing biocode.egg-info/PKG-INFO
2021-07-12T16:43:50,703   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T16:43:50,705   writing requirements to biocode.egg-info/requires.txt
2021-07-12T16:43:50,706   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T16:43:50,728   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:50,732   reading manifest template 'MANIFEST.in'
2021-07-12T16:43:50,733   warning: no files found matching 'biocode/README.rst'
2021-07-12T16:43:50,734   adding license file 'LICENSE'
2021-07-12T16:43:50,742   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:50,746   creating build/lib/biocode/data
2021-07-12T16:43:50,747   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T16:43:50,752   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T16:43:50,754   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T16:43:50,756   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T16:43:50,760   running build_scripts
2021-07-12T16:43:50,760   creating build/scripts-3.9
2021-07-12T16:43:50,761   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T16:43:50,764   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T16:43:50,765   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T16:43:50,768   copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.9
2021-07-12T16:43:50,769   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T16:43:50,772   copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.9
2021-07-12T16:43:50,774   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T16:43:50,776   copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.9
2021-07-12T16:43:50,778   copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:50,780   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,782   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T16:43:50,785   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.9
2021-07-12T16:43:50,786   copying and adjusting bin/remove_duplicate_sequences.py -> build/scripts-3.9
2021-07-12T16:43:50,788   copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.9
2021-07-12T16:43:50,790   copying and adjusting bin/report_or_replace_nonstandard_residues.py -> build/scripts-3.9
2021-07-12T16:43:50,793   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,795   copying and adjusting bin/make_go_slim.py -> build/scripts-3.9
2021-07-12T16:43:50,798   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T16:43:50,800   copying and adjusting bin/report_basic_gff_model_agreement.py -> build/scripts-3.9
2021-07-12T16:43:50,802   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
2021-07-12T16:43:50,803   copying and adjusting bin/split_fasta_into_even_files.py -> build/scripts-3.9
2021-07-12T16:43:50,805   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T16:43:50,807   copying and adjusting bin/filter_gff3_by_id_list.py -> build/scripts-3.9
2021-07-12T16:43:50,809   copying and adjusting bin/randomly_subsample_fastq.py -> build/scripts-3.9
2021-07-12T16:43:50,811   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,813   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T16:43:50,816   copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.9
2021-07-12T16:43:50,818   copying and adjusting bin/convert_genbank_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,820   copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.9
2021-07-12T16:43:50,822   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:50,824   copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.9
2021-07-12T16:43:50,826   copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.9
2021-07-12T16:43:50,828   copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:50,831   copying and adjusting bin/compare_gene_structures.py -> build/scripts-3.9
2021-07-12T16:43:50,834   copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,836   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T16:43:50,838   copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.9
2021-07-12T16:43:50,840   copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.9
2021-07-12T16:43:50,842   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,844   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T16:43:50,845   copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:50,847   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T16:43:50,850   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T16:43:50,852   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:50,854   copying and adjusting bin/filter_uniref_by_repid.py -> build/scripts-3.9
2021-07-12T16:43:50,856   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T16:43:50,858   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,860   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.9
2021-07-12T16:43:50,862   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.9
2021-07-12T16:43:50,863   copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.9
2021-07-12T16:43:50,866   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,868   copying and adjusting bin/check_gff_for_internal_stops.py -> build/scripts-3.9
2021-07-12T16:43:50,870   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T16:43:50,872   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
2021-07-12T16:43:50,874   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
2021-07-12T16:43:50,875   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,878   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T16:43:50,880   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,881   copying and adjusting bin/fasta_size_distribution_plot.py -> build/scripts-3.9
2021-07-12T16:43:50,883   copying and adjusting bin/merge_bam_files.py -> build/scripts-3.9
2021-07-12T16:43:50,885   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T16:43:50,887   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T16:43:50,889   copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.9
2021-07-12T16:43:50,891   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T16:43:50,893   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
2021-07-12T16:43:50,895   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T16:43:50,897   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T16:43:50,899   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:50,901   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T16:43:50,903   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T16:43:50,906   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T16:43:50,908   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T16:43:50,910   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
2021-07-12T16:43:50,912   copying and adjusting bin/calculate_query_coverage_by_blast.py -> build/scripts-3.9
2021-07-12T16:43:50,914   copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.9
2021-07-12T16:43:50,916   copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.9
2021-07-12T16:43:50,918   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.9
2021-07-12T16:43:50,920   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T16:43:50,922   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T16:43:50,924   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T16:43:50,925   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T16:43:50,927   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T16:43:50,929   copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.9
2021-07-12T16:43:50,931   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.9
2021-07-12T16:43:50,932   changing mode of build/scripts-3.9/filter_fastq_by_N_content.py from 644 to 755
2021-07-12T16:43:50,932   changing mode of build/scripts-3.9/convert_fastq_to_fasta.py from 644 to 755
2021-07-12T16:43:50,932   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
2021-07-12T16:43:50,933   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T16:43:50,933   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T16:43:50,933   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T16:43:50,934   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T16:43:50,934   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T16:43:50,934   changing mode of build/scripts-3.9/hmmlib_to_sqlite3.py from 644 to 755
2021-07-12T16:43:50,934   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:50,935   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T16:43:50,935   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T16:43:50,935   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T16:43:50,936   changing mode of build/scripts-3.9/create_taxonomy_db.py from 644 to 755
2021-07-12T16:43:50,936   changing mode of build/scripts-3.9/report_or_replace_nonstandard_residues.py from 644 to 755
2021-07-12T16:43:50,936   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T16:43:50,937   changing mode of build/scripts-3.9/make_go_slim.py from 644 to 755
2021-07-12T16:43:50,937   changing mode of build/scripts-3.9/validate_feature_boundaries_on_molecules.py from 644 to 755
2021-07-12T16:43:50,937   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
2021-07-12T16:43:50,938   changing mode of build/scripts-3.9/make_cufflinks_ids_unique.py from 644 to 755
2021-07-12T16:43:50,938   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T16:43:50,938   changing mode of build/scripts-3.9/remove_duplicate_features.py from 644 to 755
2021-07-12T16:43:50,939   changing mode of build/scripts-3.9/filter_gff3_by_id_list.py from 644 to 755
2021-07-12T16:43:50,939   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T16:43:50,939   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T16:43:50,939   changing mode of build/scripts-3.9/write_fasta_from_gff.py from 644 to 755
2021-07-12T16:43:50,940   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T16:43:50,940   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T16:43:50,940   changing mode of build/scripts-3.9/get_mpilup_from_id_list.py from 644 to 755
2021-07-12T16:43:50,941   changing mode of build/scripts-3.9/uniprot_sprot_to_sqlite3.py from 644 to 755
2021-07-12T16:43:50,941   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T16:43:50,941   changing mode of build/scripts-3.9/split_interleaved_sequence_file.py from 644 to 755
2021-07-12T16:43:50,941   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T16:43:50,942   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T16:43:50,942   changing mode of build/scripts-3.9/convert_augustus_to_gff3.py from 644 to 755
2021-07-12T16:43:50,942   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
2021-07-12T16:43:50,943   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
2021-07-12T16:43:50,943   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T16:43:50,943   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T16:43:50,944   changing mode of build/scripts-3.9/interleave_fastq.py from 644 to 755
2021-07-12T16:43:50,944   changing mode of build/scripts-3.9/tigrfam_info_to_sqlite3.py from 644 to 755
2021-07-12T16:43:50,944   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T16:43:50,944   changing mode of build/scripts-3.9/convert_pasa_gff_to_models.py from 644 to 755
2021-07-12T16:43:50,945   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
2021-07-12T16:43:50,945   changing mode of build/scripts-3.9/filter_uniref_by_repid.py from 644 to 755
2021-07-12T16:43:50,945   changing mode of build/scripts-3.9/merge_masked_fasta_files.py from 644 to 755
2021-07-12T16:43:50,946   changing mode of build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:50,946   changing mode of build/scripts-3.9/update_selected_column9_values.py from 644 to 755
2021-07-12T16:43:50,946   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
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2021-07-12T16:43:50,947   changing mode of build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py from 644 to 755
2021-07-12T16:43:50,947   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T16:43:50,947   changing mode of build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py from 644 to 755
2021-07-12T16:43:50,948   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T16:43:50,948   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T16:43:50,948   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:50,949   changing mode of build/scripts-3.9/report_gff3_statistics.py from 644 to 755
2021-07-12T16:43:50,949   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T16:43:50,949   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T16:43:50,949   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T16:43:50,950   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
2021-07-12T16:43:50,950   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T16:43:50,950   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T16:43:50,951   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
2021-07-12T16:43:50,951   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T16:43:50,951   changing mode of build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py from 644 to 755
2021-07-12T16:43:50,951   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
2021-07-12T16:43:50,952   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:50,952   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T16:43:50,952   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T16:43:50,953   changing mode of build/scripts-3.9/reformat_fasta_residue_lengths.py from 644 to 755
2021-07-12T16:43:50,953   changing mode of build/scripts-3.9/select_training_and_evaluation_transcripts.py from 644 to 755
2021-07-12T16:43:50,953   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
2021-07-12T16:43:50,954   changing mode of build/scripts-3.9/calculate_query_coverage_by_blast.py from 644 to 755
2021-07-12T16:43:50,954   changing mode of build/scripts-3.9/convert_gff3_to_ncbi_tbl.py from 644 to 755
2021-07-12T16:43:50,954   changing mode of build/scripts-3.9/filter_fasta_by_type.py from 644 to 755
2021-07-12T16:43:50,954   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T16:43:50,955   changing mode of build/scripts-3.9/create_rsem_html_table.py from 644 to 755
2021-07-12T16:43:50,955   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
2021-07-12T16:43:50,955   changing mode of build/scripts-3.9/set_source_column.py from 644 to 755
2021-07-12T16:43:50,956   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T16:43:50,956   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T16:43:50,956   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
2021-07-12T16:43:50,956   changing mode of build/scripts-3.9/append_to_column_9_value.py from 644 to 755
2021-07-12T16:43:50,963   installing to build/bdist.linux-armv7l/wheel
2021-07-12T16:43:50,964   running install
2021-07-12T16:43:50,965   running install_lib
2021-07-12T16:43:50,969   creating build/bdist.linux-armv7l
2021-07-12T16:43:50,969   creating build/bdist.linux-armv7l/wheel
2021-07-12T16:43:50,971   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,972   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,975   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,979   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,981   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,985   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,988   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:50,992   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:50,993   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:50,996   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:51,001   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:51,003   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:51,005   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:51,006   running install_egg_info
2021-07-12T16:43:51,016   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.4.1-py3.9.egg-info
2021-07-12T16:43:51,030   running install_scripts
2021-07-12T16:43:51,063   creating build/bdist.linux-armv7l/wheel/biocode-0.4.1.data
2021-07-12T16:43:51,064   creating build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,065   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,068   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,071   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,073   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,076   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,079   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,081   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,084   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,086   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,089   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,091   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,094   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,097   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,100   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,102   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,105   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,108   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,110   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,113   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,116   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,118   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,121   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,124   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,127   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,129   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,132   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,134   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,138   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,140   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,143   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,146   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,149   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,152   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,155   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,158   copying build/scripts-3.9/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,161   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,164   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,166   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,169   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,171   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,174   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,177   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,180   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,182   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,185   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,188   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,191   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,193   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,196   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,199   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,202   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,204   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,206   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,209   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,211   copying build/scripts-3.9/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,213   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,216   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,218   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,221   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,224   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,226   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,229   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,232   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,234   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,237   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,240   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,243   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,245   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,249   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,251   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,254   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,257   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,260   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,262   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,265   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,268   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,270   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,272   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,274   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,276   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,279   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,281   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,283   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,285   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts
2021-07-12T16:43:51,287   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/validate_fasta.py to 755
2021-07-12T16:43:51,288   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/write_fasta_from_gff.py to 755
2021-07-12T16:43:51,288   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/uniref_to_sqlite3.py to 755
2021-07-12T16:43:51,288   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/make_cufflinks_ids_unique.py to 755
2021-07-12T16:43:51,289   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/filter_fastq_by_N_content.py to 755
2021-07-12T16:43:51,289   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/replace_homopolymeric_repeats_with_Ns.py to 755
2021-07-12T16:43:51,289   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/filter_uniref_by_taxonomy.py to 755
2021-07-12T16:43:51,289   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/subsample_fasta.py to 755
2021-07-12T16:43:51,290   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/split_isoforms_into_individual_genes.py to 755
2021-07-12T16:43:51,290   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/create_rsem_html_table.py to 755
2021-07-12T16:43:51,290   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/fasta_size_distribution_plot.py to 755
2021-07-12T16:43:51,290   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/hmmlib_to_sqlite3.py to 755
2021-07-12T16:43:51,291   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/filter_gff3_by_id_list.py to 755
2021-07-12T16:43:51,291   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/correct_gff3_CDS_phase_column.py to 755
2021-07-12T16:43:51,291   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/update_selected_column9_values.py to 755
2021-07-12T16:43:51,292   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T16:43:51,292   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/check_gff_for_internal_stops.py to 755
2021-07-12T16:43:51,292   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_aat_btab_to_gff3.py to 755
2021-07-12T16:43:51,292   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/prepend_to_fasta_header.py to 755
2021-07-12T16:43:51,293   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/remove_duplicate_features.py to 755
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2021-07-12T16:43:51,293   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/split_molecules_on_gaps.py to 755
2021-07-12T16:43:51,294   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T16:43:51,294   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/detect_inverted_repeats.py to 755
2021-07-12T16:43:51,294   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_fasta_contigs_to_gff3.py to 755
2021-07-12T16:43:51,294   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_prodigal_to_gff3.py to 755
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2021-07-12T16:43:51,295   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/merge_masked_fasta_files.py to 755
2021-07-12T16:43:51,295   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/set_source_column.py to 755
2021-07-12T16:43:51,296   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/create_taxonomy_db.py to 755
2021-07-12T16:43:51,296   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/uniprot_sprot_to_sqlite3.py to 755
2021-07-12T16:43:51,296   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/extend_genes_to_stops.py to 755
2021-07-12T16:43:51,296   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/mark_partial_genes.py to 755
2021-07-12T16:43:51,297   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/check_for_embedded_fasta_headers.py to 755
2021-07-12T16:43:51,297   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/make_go_slim.py to 755
2021-07-12T16:43:51,297   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/reorient_sequences_by_id.py to 755
2021-07-12T16:43:51,297   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/reformat_fasta_residue_lengths.py to 755
2021-07-12T16:43:51,298   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_gff3_to_gene_association_format.py to 755
2021-07-12T16:43:51,298   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/append_to_fasta_header.py to 755
2021-07-12T16:43:51,298   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/extract_fasta_regions.py to 755
2021-07-12T16:43:51,299   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/eggnog_to_sqlite3.py to 755
2021-07-12T16:43:51,299   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/create_taxonomic_profile_from_blast.py to 755
2021-07-12T16:43:51,299   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/append_to_column_9_value.py to 755
2021-07-12T16:43:51,299   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_fastq_to_fasta.py to 755
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2021-07-12T16:43:51,300   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_cegma_gff_to_gff3.py to 755
2021-07-12T16:43:51,300   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/interleave_fastq.py to 755
2021-07-12T16:43:51,301   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/report_or_replace_nonstandard_residues.py to 755
2021-07-12T16:43:51,301   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_augustus_to_gff3.py to 755
2021-07-12T16:43:51,301   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_scipio_gff_to_gff3.py to 755
2021-07-12T16:43:51,301   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/fastq_simple_stats.py to 755
2021-07-12T16:43:51,302   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/fasta_base_content.py to 755
2021-07-12T16:43:51,302   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/append_to_fastq_read_header.py to 755
2021-07-12T16:43:51,302   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/replace_gff_type_column_value.py to 755
2021-07-12T16:43:51,302   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/filter_uniref_by_repid.py to 755
2021-07-12T16:43:51,303   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/add_gff3_locus_tags.py to 755
2021-07-12T16:43:51,303   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/biothings_coordinate_comparisons.py to 755
2021-07-12T16:43:51,303   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/remove_orphaned_features.py to 755
2021-07-12T16:43:51,304   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/randomly_subsample_fastq.py to 755
2021-07-12T16:43:51,304   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/interleave_fasta.py to 755
2021-07-12T16:43:51,304   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755
2021-07-12T16:43:51,304   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/remove_masked_gene_models.py to 755
2021-07-12T16:43:51,305   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T16:43:51,305   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_pasa_gff_to_models.py to 755
2021-07-12T16:43:51,305   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_cufflinks_gtf_to_gff3.py to 755
2021-07-12T16:43:51,306   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/calculate_query_coverage_by_blast.py to 755
2021-07-12T16:43:51,306   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/merge_bam_files.py to 755
2021-07-12T16:43:51,306   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T16:43:51,307   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/report_basic_gff_model_agreement.py to 755
2021-07-12T16:43:51,307   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T16:43:51,307   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/get_mpilup_from_id_list.py to 755
2021-07-12T16:43:51,307   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T16:43:51,308   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
2021-07-12T16:43:51,308   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/make_go_slim_index.py to 755
2021-07-12T16:43:51,308   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/convert_gff3_to_ncbi_tbl.py to 755
2021-07-12T16:43:51,309   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T16:43:51,309   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T16:43:51,309   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T16:43:51,309   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755
2021-07-12T16:43:51,310   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T16:43:51,310   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/tigrfam_info_to_sqlite3.py to 755
2021-07-12T16:43:51,310   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/report_coverage_gaps.py to 755
2021-07-12T16:43:51,311   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/filter_fasta_by_header_regex.py to 755
2021-07-12T16:43:51,311   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.1.data/scripts/report_gff3_statistics.py to 755
2021-07-12T16:43:51,331   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T16:43:51,336   creating build/bdist.linux-armv7l/wheel/biocode-0.4.1.dist-info/WHEEL
2021-07-12T16:43:51,338   creating '/tmp/pip-wheel-w0sdxd82/biocode-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T16:43:51,341   adding 'biocode/__init__.py'
2021-07-12T16:43:51,343   adding 'biocode/annotation.py'
2021-07-12T16:43:51,345   adding 'biocode/genbank.py'
2021-07-12T16:43:51,349   adding 'biocode/gff.py'
2021-07-12T16:43:51,352   adding 'biocode/tbl.py'
2021-07-12T16:43:51,358   adding 'biocode/things.py'
2021-07-12T16:43:51,361   adding 'biocode/utils.py'
2021-07-12T16:43:51,367   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T16:43:51,369   adding 'biocode/data/__init__.py'
2021-07-12T16:43:51,370   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T16:43:51,372   adding 'biocode/data/rsem_html_table.template'
2021-07-12T16:43:51,377   adding 'biocode-0.4.1.data/scripts/add_gff3_locus_tags.py'
2021-07-12T16:43:51,379   adding 'biocode-0.4.1.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T16:43:51,380   adding 'biocode-0.4.1.data/scripts/append_to_column_9_value.py'
2021-07-12T16:43:51,382   adding 'biocode-0.4.1.data/scripts/append_to_fasta_header.py'
2021-07-12T16:43:51,383   adding 'biocode-0.4.1.data/scripts/append_to_fastq_read_header.py'
2021-07-12T16:43:51,384   adding 'biocode-0.4.1.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T16:43:51,386   adding 'biocode-0.4.1.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T16:43:51,388   adding 'biocode-0.4.1.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T16:43:51,389   adding 'biocode-0.4.1.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T16:43:51,392   adding 'biocode-0.4.1.data/scripts/compare_gene_structures.py'
2021-07-12T16:43:51,395   adding 'biocode-0.4.1.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T16:43:51,397   adding 'biocode-0.4.1.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T16:43:51,399   adding 'biocode-0.4.1.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T16:43:51,401   adding 'biocode-0.4.1.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T16:43:51,403   adding 'biocode-0.4.1.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T16:43:51,404   adding 'biocode-0.4.1.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T16:43:51,406   adding 'biocode-0.4.1.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T16:43:51,408   adding 'biocode-0.4.1.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T16:43:51,410   adding 'biocode-0.4.1.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T16:43:51,412   adding 'biocode-0.4.1.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T16:43:51,413   adding 'biocode-0.4.1.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T16:43:51,415   adding 'biocode-0.4.1.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T16:43:51,416   adding 'biocode-0.4.1.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T16:43:51,418   adding 'biocode-0.4.1.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T16:43:51,420   adding 'biocode-0.4.1.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T16:43:51,421   adding 'biocode-0.4.1.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T16:43:51,423   adding 'biocode-0.4.1.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T16:43:51,424   adding 'biocode-0.4.1.data/scripts/create_rsem_html_table.py'
2021-07-12T16:43:51,426   adding 'biocode-0.4.1.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T16:43:51,428   adding 'biocode-0.4.1.data/scripts/create_taxonomy_db.py'
2021-07-12T16:43:51,430   adding 'biocode-0.4.1.data/scripts/detect_inverted_repeats.py'
2021-07-12T16:43:51,432   adding 'biocode-0.4.1.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T16:43:51,434   adding 'biocode-0.4.1.data/scripts/extend_genes_to_stops.py'
2021-07-12T16:43:51,435   adding 'biocode-0.4.1.data/scripts/extract_fasta_regions.py'
2021-07-12T16:43:51,437   adding 'biocode-0.4.1.data/scripts/fasta_base_content.py'
2021-07-12T16:43:51,438   adding 'biocode-0.4.1.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T16:43:51,440   adding 'biocode-0.4.1.data/scripts/fastq_simple_stats.py'
2021-07-12T16:43:51,441   adding 'biocode-0.4.1.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T16:43:51,443   adding 'biocode-0.4.1.data/scripts/filter_fasta_by_type.py'
2021-07-12T16:43:51,444   adding 'biocode-0.4.1.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T16:43:51,446   adding 'biocode-0.4.1.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T16:43:51,447   adding 'biocode-0.4.1.data/scripts/filter_uniref_by_repid.py'
2021-07-12T16:43:51,449   adding 'biocode-0.4.1.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T16:43:51,451   adding 'biocode-0.4.1.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T16:43:51,453   adding 'biocode-0.4.1.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T16:43:51,454   adding 'biocode-0.4.1.data/scripts/interleave_fasta.py'
2021-07-12T16:43:51,456   adding 'biocode-0.4.1.data/scripts/interleave_fastq.py'
2021-07-12T16:43:51,457   adding 'biocode-0.4.1.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T16:43:51,459   adding 'biocode-0.4.1.data/scripts/make_go_slim.py'
2021-07-12T16:43:51,461   adding 'biocode-0.4.1.data/scripts/make_go_slim_index.py'
2021-07-12T16:43:51,463   adding 'biocode-0.4.1.data/scripts/mark_partial_genes.py'
2021-07-12T16:43:51,464   adding 'biocode-0.4.1.data/scripts/merge_bam_files.py'
2021-07-12T16:43:51,466   adding 'biocode-0.4.1.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T16:43:51,467   adding 'biocode-0.4.1.data/scripts/merge_masked_fasta_files.py'
2021-07-12T16:43:51,469   adding 'biocode-0.4.1.data/scripts/prepend_to_fasta_header.py'
2021-07-12T16:43:51,471   adding 'biocode-0.4.1.data/scripts/randomly_subsample_fastq.py'
2021-07-12T16:43:51,474   adding 'biocode-0.4.1.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T16:43:51,475   adding 'biocode-0.4.1.data/scripts/remove_duplicate_features.py'
2021-07-12T16:43:51,477   adding 'biocode-0.4.1.data/scripts/remove_duplicate_sequences.py'
2021-07-12T16:43:51,478   adding 'biocode-0.4.1.data/scripts/remove_masked_gene_models.py'
2021-07-12T16:43:51,480   adding 'biocode-0.4.1.data/scripts/remove_orphaned_features.py'
2021-07-12T16:43:51,481   adding 'biocode-0.4.1.data/scripts/reorient_sequences_by_id.py'
2021-07-12T16:43:51,482   adding 'biocode-0.4.1.data/scripts/replace_gff_type_column_value.py'
2021-07-12T16:43:51,484   adding 'biocode-0.4.1.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T16:43:51,486   adding 'biocode-0.4.1.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T16:43:51,487   adding 'biocode-0.4.1.data/scripts/report_coverage_gaps.py'
2021-07-12T16:43:51,489   adding 'biocode-0.4.1.data/scripts/report_gff3_statistics.py'
2021-07-12T16:43:51,491   adding 'biocode-0.4.1.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T16:43:51,493   adding 'biocode-0.4.1.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T16:43:51,495   adding 'biocode-0.4.1.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T16:43:51,496   adding 'biocode-0.4.1.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T16:43:51,498   adding 'biocode-0.4.1.data/scripts/set_source_column.py'
2021-07-12T16:43:51,499   adding 'biocode-0.4.1.data/scripts/split_fasta_into_even_files.py'
2021-07-12T16:43:51,501   adding 'biocode-0.4.1.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T16:43:51,503   adding 'biocode-0.4.1.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T16:43:51,504   adding 'biocode-0.4.1.data/scripts/split_molecules_on_gaps.py'
2021-07-12T16:43:51,506   adding 'biocode-0.4.1.data/scripts/subsample_fasta.py'
2021-07-12T16:43:51,507   adding 'biocode-0.4.1.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T16:43:51,509   adding 'biocode-0.4.1.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T16:43:51,511   adding 'biocode-0.4.1.data/scripts/uniref_to_sqlite3.py'
2021-07-12T16:43:51,513   adding 'biocode-0.4.1.data/scripts/update_selected_column9_values.py'
2021-07-12T16:43:51,515   adding 'biocode-0.4.1.data/scripts/validate_fasta.py'
2021-07-12T16:43:51,516   adding 'biocode-0.4.1.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T16:43:51,518   adding 'biocode-0.4.1.data/scripts/write_fasta_from_gff.py'
2021-07-12T16:43:51,521   adding 'biocode-0.4.1.dist-info/LICENSE'
2021-07-12T16:43:51,522   adding 'biocode-0.4.1.dist-info/METADATA'
2021-07-12T16:43:51,523   adding 'biocode-0.4.1.dist-info/WHEEL'
2021-07-12T16:43:51,524   adding 'biocode-0.4.1.dist-info/top_level.txt'
2021-07-12T16:43:51,526   adding 'biocode-0.4.1.dist-info/RECORD'
2021-07-12T16:43:51,532   removing build/bdist.linux-armv7l/wheel
2021-07-12T16:43:51,669   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T16:43:51,674   Created wheel for biocode: filename=biocode-0.4.1-py3-none-any.whl size=209975 sha256=521f2d73f74c744fbe98259bd0c5246da47360c2f15cc9673dd508810a483917
2021-07-12T16:43:51,674   Stored in directory: /tmp/pip-ephem-wheel-cache-7kkdciwn/wheels/11/a6/51/49ae4ac8ec27f4fc5ed88f237a5abd2e900bd790ab967b9c1a
2021-07-12T16:43:51,687 Successfully built biocode
2021-07-12T16:43:51,699 Removed build tracker: '/tmp/pip-req-tracker-wzwvh4uh'