2021-07-12T16:43:53,411 Created temporary directory: /tmp/pip-ephem-wheel-cache-19dallr4
2021-07-12T16:43:53,414 Created temporary directory: /tmp/pip-req-tracker-5invf4zf
2021-07-12T16:43:53,414 Initialized build tracking at /tmp/pip-req-tracker-5invf4zf
2021-07-12T16:43:53,415 Created build tracker: /tmp/pip-req-tracker-5invf4zf
2021-07-12T16:43:53,415 Entered build tracker: /tmp/pip-req-tracker-5invf4zf
2021-07-12T16:43:53,415 Created temporary directory: /tmp/pip-wheel-xgqq25xg
2021-07-12T16:43:53,446 1 location(s) to search for versions of biocode:
2021-07-12T16:43:53,446 * https://pypi.org/simple/biocode/
2021-07-12T16:43:53,446 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T16:43:53,447 Getting page https://pypi.org/simple/biocode/
2021-07-12T16:43:53,448 Found index url https://pypi.org/simple
2021-07-12T16:43:53,554   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T16:43:53,554   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T16:43:53,555   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T16:43:53,555   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T16:43:53,555   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T16:43:53,555   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T16:43:53,556   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T16:43:53,556   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T16:43:53,556   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T16:43:53,557   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T16:43:53,557   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T16:43:53,557   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T16:43:53,558   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T16:43:53,558   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T16:43:53,558   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T16:43:53,558   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T16:43:53,559   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T16:43:53,559   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T16:43:53,559   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T16:43:53,559   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T16:43:53,560   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T16:43:53,560   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T16:43:53,560   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T16:43:53,561   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T16:43:53,561   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T16:43:53,561 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T16:43:53,582 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T16:43:53,601 Collecting biocode==0.4.2
2021-07-12T16:43:53,603   Created temporary directory: /tmp/pip-unpack-lra70g10
2021-07-12T16:43:53,825   Downloading biocode-0.4.2.tar.gz (154 kB)
2021-07-12T16:43:54,119   Added biocode==0.4.2 from https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea to build tracker '/tmp/pip-req-tracker-5invf4zf'
2021-07-12T16:43:54,120     Running setup.py (path:/tmp/pip-wheel-xgqq25xg/biocode_0403a58a3a7e421d91e1358aa3affc9e/setup.py) egg_info for package biocode
2021-07-12T16:43:54,120     Created temporary directory: /tmp/pip-pip-egg-info-km13y97f
2021-07-12T16:43:54,121     Running command python setup.py egg_info
2021-07-12T16:43:55,040     /tmp/pip-wheel-xgqq25xg/biocode_0403a58a3a7e421d91e1358aa3affc9e/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T16:43:55,041       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T16:43:55,274     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T16:43:55,274       warnings.warn(msg)
2021-07-12T16:43:55,384     running egg_info
2021-07-12T16:43:55,386     creating /tmp/pip-pip-egg-info-km13y97f/biocode.egg-info
2021-07-12T16:43:55,387     writing /tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/PKG-INFO
2021-07-12T16:43:55,390     writing dependency_links to /tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/dependency_links.txt
2021-07-12T16:43:55,392     writing requirements to /tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/requires.txt
2021-07-12T16:43:55,393     writing top-level names to /tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/top_level.txt
2021-07-12T16:43:55,394     writing manifest file '/tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:55,549     reading manifest file '/tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:55,551     reading manifest template 'MANIFEST.in'
2021-07-12T16:43:55,552     warning: no files found matching 'biocode/README.rst'
2021-07-12T16:43:55,553     adding license file 'LICENSE'
2021-07-12T16:43:55,558     writing manifest file '/tmp/pip-pip-egg-info-km13y97f/biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:55,635   Source in /tmp/pip-wheel-xgqq25xg/biocode_0403a58a3a7e421d91e1358aa3affc9e has version 0.4.2, which satisfies requirement biocode==0.4.2 from https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea
2021-07-12T16:43:55,636   Removed biocode==0.4.2 from https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea from build tracker '/tmp/pip-req-tracker-5invf4zf'
2021-07-12T16:43:55,640 Created temporary directory: /tmp/pip-unpack-m8ifma9c
2021-07-12T16:43:55,641 Building wheels for collected packages: biocode
2021-07-12T16:43:55,645   Created temporary directory: /tmp/pip-wheel-2d6vz919
2021-07-12T16:43:55,646   Building wheel for biocode (setup.py): started
2021-07-12T16:43:55,646   Destination directory: /tmp/pip-wheel-2d6vz919
2021-07-12T16:43:55,646   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xgqq25xg/biocode_0403a58a3a7e421d91e1358aa3affc9e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xgqq25xg/biocode_0403a58a3a7e421d91e1358aa3affc9e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2d6vz919
2021-07-12T16:43:56,568   /tmp/pip-wheel-xgqq25xg/biocode_0403a58a3a7e421d91e1358aa3affc9e/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T16:43:56,568     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T16:43:56,798   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T16:43:56,798     warnings.warn(msg)
2021-07-12T16:43:56,924   running bdist_wheel
2021-07-12T16:43:57,084   running build
2021-07-12T16:43:57,084   running build_py
2021-07-12T16:43:57,226   creating build
2021-07-12T16:43:57,226   creating build/lib
2021-07-12T16:43:57,227   creating build/lib/biocode
2021-07-12T16:43:57,229   copying biocode/things.py -> build/lib/biocode
2021-07-12T16:43:57,233   copying biocode/gff.py -> build/lib/biocode
2021-07-12T16:43:57,236   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T16:43:57,239   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T16:43:57,241   copying biocode/utils.py -> build/lib/biocode
2021-07-12T16:43:57,244   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T16:43:57,247   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T16:43:57,249   running egg_info
2021-07-12T16:43:57,265   writing biocode.egg-info/PKG-INFO
2021-07-12T16:43:57,266   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T16:43:57,268   writing requirements to biocode.egg-info/requires.txt
2021-07-12T16:43:57,269   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T16:43:57,290   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:57,294   reading manifest template 'MANIFEST.in'
2021-07-12T16:43:57,295   warning: no files found matching 'biocode/README.rst'
2021-07-12T16:43:57,296   adding license file 'LICENSE'
2021-07-12T16:43:57,304   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T16:43:57,308   creating build/lib/biocode/data
2021-07-12T16:43:57,309   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T16:43:57,313   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T16:43:57,315   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T16:43:57,318   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T16:43:57,321   running build_scripts
2021-07-12T16:43:57,322   creating build/scripts-3.9
2021-07-12T16:43:57,322   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T16:43:57,325   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T16:43:57,326   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T16:43:57,328   copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.9
2021-07-12T16:43:57,330   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T16:43:57,332   copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.9
2021-07-12T16:43:57,333   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T16:43:57,335   copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.9
2021-07-12T16:43:57,337   copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:57,339   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,341   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T16:43:57,343   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.9
2021-07-12T16:43:57,345   copying and adjusting bin/remove_duplicate_sequences.py -> build/scripts-3.9
2021-07-12T16:43:57,346   copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.9
2021-07-12T16:43:57,349   copying and adjusting bin/report_or_replace_nonstandard_residues.py -> build/scripts-3.9
2021-07-12T16:43:57,351   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,353   copying and adjusting bin/make_go_slim.py -> build/scripts-3.9
2021-07-12T16:43:57,356   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T16:43:57,357   copying and adjusting bin/report_basic_gff_model_agreement.py -> build/scripts-3.9
2021-07-12T16:43:57,359   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
2021-07-12T16:43:57,360   copying and adjusting bin/split_fasta_into_even_files.py -> build/scripts-3.9
2021-07-12T16:43:57,362   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T16:43:57,363   copying and adjusting bin/filter_gff3_by_id_list.py -> build/scripts-3.9
2021-07-12T16:43:57,365   copying and adjusting bin/randomly_subsample_fastq.py -> build/scripts-3.9
2021-07-12T16:43:57,367   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,370   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T16:43:57,372   copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.9
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2021-07-12T16:43:57,375   copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.9
2021-07-12T16:43:57,377   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:57,379   copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.9
2021-07-12T16:43:57,381   copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.9
2021-07-12T16:43:57,383   copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:57,386   copying and adjusting bin/compare_gene_structures.py -> build/scripts-3.9
2021-07-12T16:43:57,389   copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,391   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T16:43:57,393   copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.9
2021-07-12T16:43:57,396   copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.9
2021-07-12T16:43:57,397   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,399   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T16:43:57,401   copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:57,402   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T16:43:57,404   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T16:43:57,407   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.9
2021-07-12T16:43:57,409   copying and adjusting bin/filter_uniref_by_repid.py -> build/scripts-3.9
2021-07-12T16:43:57,410   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T16:43:57,412   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,414   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.9
2021-07-12T16:43:57,416   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.9
2021-07-12T16:43:57,417   copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.9
2021-07-12T16:43:57,419   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,422   copying and adjusting bin/check_gff_for_internal_stops.py -> build/scripts-3.9
2021-07-12T16:43:57,423   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T16:43:57,425   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
2021-07-12T16:43:57,427   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
2021-07-12T16:43:57,429   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,431   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T16:43:57,433   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,434   copying and adjusting bin/fasta_size_distribution_plot.py -> build/scripts-3.9
2021-07-12T16:43:57,437   copying and adjusting bin/merge_bam_files.py -> build/scripts-3.9
2021-07-12T16:43:57,438   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T16:43:57,440   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T16:43:57,442   copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.9
2021-07-12T16:43:57,443   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T16:43:57,445   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
2021-07-12T16:43:57,448   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T16:43:57,449   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T16:43:57,451   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T16:43:57,453   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T16:43:57,456   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T16:43:57,458   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T16:43:57,460   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T16:43:57,462   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
2021-07-12T16:43:57,463   copying and adjusting bin/calculate_query_coverage_by_blast.py -> build/scripts-3.9
2021-07-12T16:43:57,465   copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.9
2021-07-12T16:43:57,467   copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.9
2021-07-12T16:43:57,469   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.9
2021-07-12T16:43:57,470   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T16:43:57,472   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T16:43:57,474   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T16:43:57,475   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T16:43:57,477   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T16:43:57,479   copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.9
2021-07-12T16:43:57,480   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.9
2021-07-12T16:43:57,481   changing mode of build/scripts-3.9/filter_fastq_by_N_content.py from 644 to 755
2021-07-12T16:43:57,482   changing mode of build/scripts-3.9/convert_fastq_to_fasta.py from 644 to 755
2021-07-12T16:43:57,482   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
2021-07-12T16:43:57,482   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T16:43:57,482   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T16:43:57,483   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T16:43:57,483   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T16:43:57,483   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T16:43:57,483   changing mode of build/scripts-3.9/hmmlib_to_sqlite3.py from 644 to 755
2021-07-12T16:43:57,484   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:57,484   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T16:43:57,484   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T16:43:57,484   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T16:43:57,485   changing mode of build/scripts-3.9/create_taxonomy_db.py from 644 to 755
2021-07-12T16:43:57,485   changing mode of build/scripts-3.9/report_or_replace_nonstandard_residues.py from 644 to 755
2021-07-12T16:43:57,485   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T16:43:57,486   changing mode of build/scripts-3.9/make_go_slim.py from 644 to 755
2021-07-12T16:43:57,486   changing mode of build/scripts-3.9/validate_feature_boundaries_on_molecules.py from 644 to 755
2021-07-12T16:43:57,486   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
2021-07-12T16:43:57,486   changing mode of build/scripts-3.9/make_cufflinks_ids_unique.py from 644 to 755
2021-07-12T16:43:57,487   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T16:43:57,487   changing mode of build/scripts-3.9/remove_duplicate_features.py from 644 to 755
2021-07-12T16:43:57,487   changing mode of build/scripts-3.9/filter_gff3_by_id_list.py from 644 to 755
2021-07-12T16:43:57,487   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T16:43:57,488   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T16:43:57,488   changing mode of build/scripts-3.9/write_fasta_from_gff.py from 644 to 755
2021-07-12T16:43:57,488   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T16:43:57,489   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T16:43:57,489   changing mode of build/scripts-3.9/get_mpilup_from_id_list.py from 644 to 755
2021-07-12T16:43:57,489   changing mode of build/scripts-3.9/uniprot_sprot_to_sqlite3.py from 644 to 755
2021-07-12T16:43:57,489   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T16:43:57,490   changing mode of build/scripts-3.9/split_interleaved_sequence_file.py from 644 to 755
2021-07-12T16:43:57,490   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T16:43:57,490   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T16:43:57,491   changing mode of build/scripts-3.9/convert_augustus_to_gff3.py from 644 to 755
2021-07-12T16:43:57,491   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
2021-07-12T16:43:57,491   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
2021-07-12T16:43:57,491   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T16:43:57,492   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T16:43:57,492   changing mode of build/scripts-3.9/interleave_fastq.py from 644 to 755
2021-07-12T16:43:57,492   changing mode of build/scripts-3.9/tigrfam_info_to_sqlite3.py from 644 to 755
2021-07-12T16:43:57,492   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T16:43:57,493   changing mode of build/scripts-3.9/convert_pasa_gff_to_models.py from 644 to 755
2021-07-12T16:43:57,493   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
2021-07-12T16:43:57,493   changing mode of build/scripts-3.9/filter_uniref_by_repid.py from 644 to 755
2021-07-12T16:43:57,493   changing mode of build/scripts-3.9/merge_masked_fasta_files.py from 644 to 755
2021-07-12T16:43:57,494   changing mode of build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:57,494   changing mode of build/scripts-3.9/update_selected_column9_values.py from 644 to 755
2021-07-12T16:43:57,494   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
2021-07-12T16:43:57,494   changing mode of build/scripts-3.9/make_go_slim_index.py from 644 to 755
2021-07-12T16:43:57,495   changing mode of build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py from 644 to 755
2021-07-12T16:43:57,495   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T16:43:57,495   changing mode of build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py from 644 to 755
2021-07-12T16:43:57,496   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T16:43:57,496   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T16:43:57,496   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:57,496   changing mode of build/scripts-3.9/report_gff3_statistics.py from 644 to 755
2021-07-12T16:43:57,497   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T16:43:57,497   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T16:43:57,497   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T16:43:57,498   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
2021-07-12T16:43:57,498   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T16:43:57,498   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T16:43:57,498   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
2021-07-12T16:43:57,499   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T16:43:57,499   changing mode of build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py from 644 to 755
2021-07-12T16:43:57,499   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
2021-07-12T16:43:57,499   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T16:43:57,500   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T16:43:57,500   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T16:43:57,500   changing mode of build/scripts-3.9/reformat_fasta_residue_lengths.py from 644 to 755
2021-07-12T16:43:57,501   changing mode of build/scripts-3.9/select_training_and_evaluation_transcripts.py from 644 to 755
2021-07-12T16:43:57,501   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
2021-07-12T16:43:57,501   changing mode of build/scripts-3.9/calculate_query_coverage_by_blast.py from 644 to 755
2021-07-12T16:43:57,501   changing mode of build/scripts-3.9/convert_gff3_to_ncbi_tbl.py from 644 to 755
2021-07-12T16:43:57,501   changing mode of build/scripts-3.9/filter_fasta_by_type.py from 644 to 755
2021-07-12T16:43:57,502   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T16:43:57,502   changing mode of build/scripts-3.9/create_rsem_html_table.py from 644 to 755
2021-07-12T16:43:57,502   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
2021-07-12T16:43:57,502   changing mode of build/scripts-3.9/set_source_column.py from 644 to 755
2021-07-12T16:43:57,503   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T16:43:57,503   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T16:43:57,503   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
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2021-07-12T16:43:57,510   installing to build/bdist.linux-armv7l/wheel
2021-07-12T16:43:57,510   running install
2021-07-12T16:43:57,511   running install_lib
2021-07-12T16:43:57,515   creating build/bdist.linux-armv7l
2021-07-12T16:43:57,515   creating build/bdist.linux-armv7l/wheel
2021-07-12T16:43:57,517   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,518   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,522   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,525   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,527   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,529   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,531   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,533   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T16:43:57,537   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:57,537   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:57,541   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:57,542   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:57,544   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T16:43:57,548   running install_egg_info
2021-07-12T16:43:57,558   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.4.2-py3.9.egg-info
2021-07-12T16:43:57,570   running install_scripts
2021-07-12T16:43:57,602   creating build/bdist.linux-armv7l/wheel/biocode-0.4.2.data
2021-07-12T16:43:57,603   creating build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,604   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,606   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,607   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,609   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,611   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,613   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,615   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,617   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,620   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,622   copying build/scripts-3.9/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,624   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,627   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,629   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,632   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,634   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,637   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,639   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,641   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,643   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,646   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,648   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,650   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,653   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,655   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,657   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,660   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,663   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,666   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,668   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,670   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,673   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,676   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,678   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,681   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,683   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,684   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,687   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,689   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,691   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,693   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,695   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,697   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,699   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,701   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,704   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,706   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,708   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,710   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,712   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,714   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,716   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,718   copying build/scripts-3.9/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,720   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,722   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,724   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,728   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,730   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,732   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,735   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,737   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,740   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,742   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,744   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,746   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,749   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,751   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,753   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,755   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,757   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,759   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,761   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,764   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,766   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,768   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,771   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,773   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,775   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,777   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,779   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,782   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,784   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,787   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,789   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,791   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts
2021-07-12T16:43:57,793   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/write_fasta_from_gff.py to 755
2021-07-12T16:43:57,793   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/interleave_fasta.py to 755
2021-07-12T16:43:57,793   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/filter_fasta_by_header_regex.py to 755
2021-07-12T16:43:57,794   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_fastq_to_fasta.py to 755
2021-07-12T16:43:57,794   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/randomly_subsample_fastq.py to 755
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2021-07-12T16:43:57,794   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_augustus_to_gff3.py to 755
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2021-07-12T16:43:57,795   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/replace_homopolymeric_repeats_with_Ns.py to 755
2021-07-12T16:43:57,795   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/make_go_slim.py to 755
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2021-07-12T16:43:57,796   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
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2021-07-12T16:43:57,797   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/prepend_to_fasta_header.py to 755
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2021-07-12T16:43:57,798   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T16:43:57,798   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_genbank_to_gff3.py to 755
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2021-07-12T16:43:57,799   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/reformat_fasta_residue_lengths.py to 755
2021-07-12T16:43:57,799   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/check_for_embedded_fasta_headers.py to 755
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2021-07-12T16:43:57,800   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T16:43:57,801   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T16:43:57,801   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/create_taxonomic_profile_from_blast.py to 755
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2021-07-12T16:43:57,806   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T16:43:57,806   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/append_to_fasta_header.py to 755
2021-07-12T16:43:57,806   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T16:43:57,806   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T16:43:57,807   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/filter_uniref_by_repid.py to 755
2021-07-12T16:43:57,807   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/subsample_fasta.py to 755
2021-07-12T16:43:57,807   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/eggnog_to_sqlite3.py to 755
2021-07-12T16:43:57,807   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_aat_btab_to_gff3.py to 755
2021-07-12T16:43:57,808   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/mark_partial_genes.py to 755
2021-07-12T16:43:57,808   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/remove_orphaned_features.py to 755
2021-07-12T16:43:57,808   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/create_taxonomy_db.py to 755
2021-07-12T16:43:57,808   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_cegma_gff_to_gff3.py to 755
2021-07-12T16:43:57,809   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_pasa_gff_to_models.py to 755
2021-07-12T16:43:57,809   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/uniprot_sprot_to_sqlite3.py to 755
2021-07-12T16:43:57,809   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/create_rsem_html_table.py to 755
2021-07-12T16:43:57,809   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/append_to_fastq_read_header.py to 755
2021-07-12T16:43:57,810   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/update_selected_column9_values.py to 755
2021-07-12T16:43:57,810   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/interleave_fastq.py to 755
2021-07-12T16:43:57,810   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/fasta_base_content.py to 755
2021-07-12T16:43:57,810   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T16:43:57,811   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/filter_gff3_by_id_list.py to 755
2021-07-12T16:43:57,811   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/reorient_sequences_by_id.py to 755
2021-07-12T16:43:57,811   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/report_coverage_gaps.py to 755
2021-07-12T16:43:57,811   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/calculate_query_coverage_by_blast.py to 755
2021-07-12T16:43:57,812   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_fasta_contigs_to_gff3.py to 755
2021-07-12T16:43:57,812   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_gff3_to_ncbi_tbl.py to 755
2021-07-12T16:43:57,812   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/hmmlib_to_sqlite3.py to 755
2021-07-12T16:43:57,812   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755
2021-07-12T16:43:57,813   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T16:43:57,813   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/report_or_replace_nonstandard_residues.py to 755
2021-07-12T16:43:57,813   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T16:43:57,813   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T16:43:57,814   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/tigrfam_info_to_sqlite3.py to 755
2021-07-12T16:43:57,814   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/make_go_slim_index.py to 755
2021-07-12T16:43:57,814   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/extract_fasta_regions.py to 755
2021-07-12T16:43:57,814   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/report_basic_gff_model_agreement.py to 755
2021-07-12T16:43:57,815   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.2.data/scripts/set_source_column.py to 755
2021-07-12T16:43:57,835   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T16:43:57,839   creating build/bdist.linux-armv7l/wheel/biocode-0.4.2.dist-info/WHEEL
2021-07-12T16:43:57,842   creating '/tmp/pip-wheel-2d6vz919/biocode-0.4.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T16:43:57,844   adding 'biocode/__init__.py'
2021-07-12T16:43:57,846   adding 'biocode/annotation.py'
2021-07-12T16:43:57,849   adding 'biocode/genbank.py'
2021-07-12T16:43:57,853   adding 'biocode/gff.py'
2021-07-12T16:43:57,856   adding 'biocode/tbl.py'
2021-07-12T16:43:57,864   adding 'biocode/things.py'
2021-07-12T16:43:57,866   adding 'biocode/utils.py'
2021-07-12T16:43:57,872   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T16:43:57,873   adding 'biocode/data/__init__.py'
2021-07-12T16:43:57,874   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T16:43:57,876   adding 'biocode/data/rsem_html_table.template'
2021-07-12T16:43:57,881   adding 'biocode-0.4.2.data/scripts/add_gff3_locus_tags.py'
2021-07-12T16:43:57,883   adding 'biocode-0.4.2.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T16:43:57,884   adding 'biocode-0.4.2.data/scripts/append_to_column_9_value.py'
2021-07-12T16:43:57,885   adding 'biocode-0.4.2.data/scripts/append_to_fasta_header.py'
2021-07-12T16:43:57,887   adding 'biocode-0.4.2.data/scripts/append_to_fastq_read_header.py'
2021-07-12T16:43:57,888   adding 'biocode-0.4.2.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T16:43:57,889   adding 'biocode-0.4.2.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T16:43:57,891   adding 'biocode-0.4.2.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T16:43:57,892   adding 'biocode-0.4.2.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T16:43:57,895   adding 'biocode-0.4.2.data/scripts/compare_gene_structures.py'
2021-07-12T16:43:57,898   adding 'biocode-0.4.2.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T16:43:57,899   adding 'biocode-0.4.2.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T16:43:57,901   adding 'biocode-0.4.2.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T16:43:57,903   adding 'biocode-0.4.2.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T16:43:57,904   adding 'biocode-0.4.2.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T16:43:57,906   adding 'biocode-0.4.2.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T16:43:57,907   adding 'biocode-0.4.2.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T16:43:57,909   adding 'biocode-0.4.2.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T16:43:57,911   adding 'biocode-0.4.2.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T16:43:57,912   adding 'biocode-0.4.2.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T16:43:57,914   adding 'biocode-0.4.2.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T16:43:57,915   adding 'biocode-0.4.2.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T16:43:57,917   adding 'biocode-0.4.2.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T16:43:57,918   adding 'biocode-0.4.2.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T16:43:57,920   adding 'biocode-0.4.2.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T16:43:57,921   adding 'biocode-0.4.2.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T16:43:57,923   adding 'biocode-0.4.2.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T16:43:57,924   adding 'biocode-0.4.2.data/scripts/create_rsem_html_table.py'
2021-07-12T16:43:57,926   adding 'biocode-0.4.2.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T16:43:57,928   adding 'biocode-0.4.2.data/scripts/create_taxonomy_db.py'
2021-07-12T16:43:57,929   adding 'biocode-0.4.2.data/scripts/detect_inverted_repeats.py'
2021-07-12T16:43:57,931   adding 'biocode-0.4.2.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T16:43:57,932   adding 'biocode-0.4.2.data/scripts/extend_genes_to_stops.py'
2021-07-12T16:43:57,934   adding 'biocode-0.4.2.data/scripts/extract_fasta_regions.py'
2021-07-12T16:43:57,935   adding 'biocode-0.4.2.data/scripts/fasta_base_content.py'
2021-07-12T16:43:57,937   adding 'biocode-0.4.2.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T16:43:57,938   adding 'biocode-0.4.2.data/scripts/fastq_simple_stats.py'
2021-07-12T16:43:57,939   adding 'biocode-0.4.2.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T16:43:57,940   adding 'biocode-0.4.2.data/scripts/filter_fasta_by_type.py'
2021-07-12T16:43:57,942   adding 'biocode-0.4.2.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T16:43:57,943   adding 'biocode-0.4.2.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T16:43:57,945   adding 'biocode-0.4.2.data/scripts/filter_uniref_by_repid.py'
2021-07-12T16:43:57,946   adding 'biocode-0.4.2.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T16:43:57,947   adding 'biocode-0.4.2.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T16:43:57,949   adding 'biocode-0.4.2.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T16:43:57,950   adding 'biocode-0.4.2.data/scripts/interleave_fasta.py'
2021-07-12T16:43:57,952   adding 'biocode-0.4.2.data/scripts/interleave_fastq.py'
2021-07-12T16:43:57,953   adding 'biocode-0.4.2.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T16:43:57,955   adding 'biocode-0.4.2.data/scripts/make_go_slim.py'
2021-07-12T16:43:57,957   adding 'biocode-0.4.2.data/scripts/make_go_slim_index.py'
2021-07-12T16:43:57,958   adding 'biocode-0.4.2.data/scripts/mark_partial_genes.py'
2021-07-12T16:43:57,959   adding 'biocode-0.4.2.data/scripts/merge_bam_files.py'
2021-07-12T16:43:57,961   adding 'biocode-0.4.2.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T16:43:57,962   adding 'biocode-0.4.2.data/scripts/merge_masked_fasta_files.py'
2021-07-12T16:43:57,963   adding 'biocode-0.4.2.data/scripts/prepend_to_fasta_header.py'
2021-07-12T16:43:57,965   adding 'biocode-0.4.2.data/scripts/randomly_subsample_fastq.py'
2021-07-12T16:43:57,966   adding 'biocode-0.4.2.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T16:43:57,968   adding 'biocode-0.4.2.data/scripts/remove_duplicate_features.py'
2021-07-12T16:43:57,969   adding 'biocode-0.4.2.data/scripts/remove_duplicate_sequences.py'
2021-07-12T16:43:57,970   adding 'biocode-0.4.2.data/scripts/remove_masked_gene_models.py'
2021-07-12T16:43:57,972   adding 'biocode-0.4.2.data/scripts/remove_orphaned_features.py'
2021-07-12T16:43:57,973   adding 'biocode-0.4.2.data/scripts/reorient_sequences_by_id.py'
2021-07-12T16:43:57,974   adding 'biocode-0.4.2.data/scripts/replace_gff_type_column_value.py'
2021-07-12T16:43:57,975   adding 'biocode-0.4.2.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T16:43:57,977   adding 'biocode-0.4.2.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T16:43:57,978   adding 'biocode-0.4.2.data/scripts/report_coverage_gaps.py'
2021-07-12T16:43:57,980   adding 'biocode-0.4.2.data/scripts/report_gff3_statistics.py'
2021-07-12T16:43:57,981   adding 'biocode-0.4.2.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T16:43:57,983   adding 'biocode-0.4.2.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T16:43:57,984   adding 'biocode-0.4.2.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T16:43:57,986   adding 'biocode-0.4.2.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T16:43:57,987   adding 'biocode-0.4.2.data/scripts/set_source_column.py'
2021-07-12T16:43:57,989   adding 'biocode-0.4.2.data/scripts/split_fasta_into_even_files.py'
2021-07-12T16:43:57,990   adding 'biocode-0.4.2.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T16:43:57,991   adding 'biocode-0.4.2.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T16:43:57,993   adding 'biocode-0.4.2.data/scripts/split_molecules_on_gaps.py'
2021-07-12T16:43:57,994   adding 'biocode-0.4.2.data/scripts/subsample_fasta.py'
2021-07-12T16:43:57,995   adding 'biocode-0.4.2.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T16:43:57,997   adding 'biocode-0.4.2.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T16:43:57,999   adding 'biocode-0.4.2.data/scripts/uniref_to_sqlite3.py'
2021-07-12T16:43:58,000   adding 'biocode-0.4.2.data/scripts/update_selected_column9_values.py'
2021-07-12T16:43:58,002   adding 'biocode-0.4.2.data/scripts/validate_fasta.py'
2021-07-12T16:43:58,003   adding 'biocode-0.4.2.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T16:43:58,005   adding 'biocode-0.4.2.data/scripts/write_fasta_from_gff.py'
2021-07-12T16:43:58,007   adding 'biocode-0.4.2.dist-info/LICENSE'
2021-07-12T16:43:58,008   adding 'biocode-0.4.2.dist-info/METADATA'
2021-07-12T16:43:58,009   adding 'biocode-0.4.2.dist-info/WHEEL'
2021-07-12T16:43:58,010   adding 'biocode-0.4.2.dist-info/top_level.txt'
2021-07-12T16:43:58,012   adding 'biocode-0.4.2.dist-info/RECORD'
2021-07-12T16:43:58,018   removing build/bdist.linux-armv7l/wheel
2021-07-12T16:43:58,136   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T16:43:58,141   Created wheel for biocode: filename=biocode-0.4.2-py3-none-any.whl size=209941 sha256=e3bae2595434c4a01ca3c8128147d556b5bde54d82faf923f41413864cea2b0d
2021-07-12T16:43:58,141   Stored in directory: /tmp/pip-ephem-wheel-cache-19dallr4/wheels/fa/ce/0e/3456b99f6f04e6e8e5669f651838685664f8c78cdfb521914d
2021-07-12T16:43:58,156 Successfully built biocode
2021-07-12T16:43:58,173 Removed build tracker: '/tmp/pip-req-tracker-5invf4zf'