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https://files.pythonhosted.org/packages/d8/23/2d8a77861f1c1e066a6d8edc217c9217641a6e7ca5cdd5539ccd1b6ab8b9/jcvi-1.0.14.tar.gz#sha256=2fda3b5e0dc9dcf0fb30578033d9274a99723b54ce6e514936f9dbd2c872f626 (from https://pypi.org/simple/jcvi/), version: 1.0.14 2021-07-12T16:57:18,652 Found link https://files.pythonhosted.org/packages/74/c8/e384f7963f349e571795468fbabf451aa903825736fde6e9d3474c238463/jcvi-1.1.1.tar.gz#sha256=ad22b0efeeb8d9fa3e9a66871b796f6fc2072e4cb48491f5b18602e585b468bb (from https://pypi.org/simple/jcvi/), version: 1.1.1 2021-07-12T16:57:18,652 Found link https://files.pythonhosted.org/packages/8f/06/0a6cdc66e7ef36c658c8867b0573c72aa7b2394759a69ed9aa5d64aa2f51/jcvi-1.1.2.tar.gz#sha256=82c914195ac82b3770bce0e0754671871a139c5c4c52158ae4723ec76c975194 (from https://pypi.org/simple/jcvi/), version: 1.1.2 2021-07-12T16:57:18,652 Found link 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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-12T16:57:18,654 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-12T16:57:18,654 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-12T16:57:18,654 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-12T16:57:18,654 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-12T16:57:18,655 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-12T16:57:18,655 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-12T16:57:18,655 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-12T16:57:18,655 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-12T16:57:18,656 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-12T16:57:18,656 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-12T16:57:18,685 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-12T16:57:18,704 Collecting jcvi==0.7.6 2021-07-12T16:57:18,706 Created temporary directory: /tmp/pip-unpack-d9t3rcri 2021-07-12T16:57:19,332 Downloading jcvi-0.7.6.tar.gz (818 kB) 2021-07-12T16:57:20,054 Added jcvi==0.7.6 from https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 to build tracker '/tmp/pip-req-tracker-27xeh_wc' 2021-07-12T16:57:20,056 Running setup.py (path:/tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf/setup.py) egg_info for package jcvi 2021-07-12T16:57:20,057 Created temporary directory: /tmp/pip-pip-egg-info-unjxp1ee 2021-07-12T16:57:20,057 Running command python setup.py egg_info 2021-07-12T16:57:22,130 running egg_info 2021-07-12T16:57:22,133 creating /tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info 2021-07-12T16:57:22,134 writing /tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/PKG-INFO 2021-07-12T16:57:22,138 writing dependency_links to /tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/dependency_links.txt 2021-07-12T16:57:22,140 writing requirements to /tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/requires.txt 2021-07-12T16:57:22,141 writing top-level names to /tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/top_level.txt 2021-07-12T16:57:22,143 writing manifest file '/tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/SOURCES.txt' 2021-07-12T16:57:22,311 reading manifest file '/tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/SOURCES.txt' 2021-07-12T16:57:22,312 reading manifest template 'MANIFEST.in' 2021-07-12T16:57:22,315 adding license file 'LICENSE' 2021-07-12T16:57:22,324 writing manifest file '/tmp/pip-pip-egg-info-unjxp1ee/jcvi.egg-info/SOURCES.txt' 2021-07-12T16:57:22,432 Source in /tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf has version 0.7.6, which satisfies requirement jcvi==0.7.6 from https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 2021-07-12T16:57:22,433 Removed jcvi==0.7.6 from https://files.pythonhosted.org/packages/e2/4b/d87a95002dd277ffe9f221afc4163714e6fc81a1d6edbcf387603c579830/jcvi-0.7.6.tar.gz#sha256=7367ca817d33976a029c1eb30732ffd10077ce25789e3f666bd37bb855955090 from build tracker '/tmp/pip-req-tracker-27xeh_wc' 2021-07-12T16:57:22,438 Created temporary directory: /tmp/pip-unpack-3n6j27oh 2021-07-12T16:57:22,438 Building wheels for collected packages: jcvi 2021-07-12T16:57:22,442 Created temporary directory: /tmp/pip-wheel-gl78hp5y 2021-07-12T16:57:22,443 Building wheel for jcvi (setup.py): started 2021-07-12T16:57:22,443 Destination directory: /tmp/pip-wheel-gl78hp5y 2021-07-12T16:57:22,443 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gl78hp5y 2021-07-12T16:57:24,460 running bdist_wheel 2021-07-12T16:57:24,466 running build 2021-07-12T16:57:24,466 running build_py 2021-07-12T16:57:24,602 creating build 2021-07-12T16:57:24,602 creating build/lib.linux-armv7l-3.9 2021-07-12T16:57:24,603 creating build/lib.linux-armv7l-3.9/jcvi 2021-07-12T16:57:24,604 copying ./tests.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-12T16:57:24,606 copying ./__init__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-12T16:57:24,608 copying ./setup_helper.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-12T16:57:24,609 copying ./__main__.py -> build/lib.linux-armv7l-3.9/jcvi 2021-07-12T16:57:24,612 creating build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,613 copying ./compara/reconstruct.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,615 copying ./compara/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,617 copying ./compara/catalog.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,620 copying ./compara/blastfilter.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,622 copying ./compara/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,625 copying ./compara/fractionation.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,628 copying ./compara/pad.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,631 copying ./compara/quota.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,633 copying ./compara/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,635 copying ./compara/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/compara 2021-07-12T16:57:24,640 creating build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,641 copying ./apps/base.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,646 copying ./apps/grid.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,648 copying ./apps/fetch.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,651 copying ./apps/restriction.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,653 copying ./apps/cap3.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,655 copying ./apps/vecscreen.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,657 copying ./apps/blastplus.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,659 copying ./apps/softlink.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,661 copying ./apps/r.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,663 copying ./apps/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,664 copying ./apps/uclust.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,668 copying ./apps/ks.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,671 copying ./apps/uniprot.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,673 copying ./apps/bwa.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,676 copying ./apps/align.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,678 copying ./apps/console.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,681 copying ./apps/gmap.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,683 copying ./apps/mask.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,685 copying ./apps/gbsubmit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,688 copying ./apps/bowtie.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,691 copying ./apps/script.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,693 copying ./apps/cdhit.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,695 copying ./apps/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,697 copying ./apps/tesseract.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,700 copying ./apps/lastz.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,702 copying ./apps/emboss.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,704 copying ./apps/phylo.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,708 copying ./apps/biomart.py -> build/lib.linux-armv7l-3.9/jcvi/apps 2021-07-12T16:57:24,712 creating build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,713 copying ./projects/pistachio.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,715 copying ./projects/bites.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,717 copying ./projects/heterosis.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,720 copying ./projects/tgbs.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,722 copying ./projects/napus.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,725 copying ./projects/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,727 copying ./projects/str.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,731 copying ./projects/pineapple.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,734 copying ./projects/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,736 copying ./projects/alfalfa.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,738 copying ./projects/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,740 copying ./projects/synfind.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,743 copying ./projects/ies.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,746 copying ./projects/misc.py -> build/lib.linux-armv7l-3.9/jcvi/projects 2021-07-12T16:57:24,750 creating build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,751 copying ./formats/btab.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,754 copying ./formats/ace.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,756 copying ./formats/sam.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,759 copying ./formats/base.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,762 copying ./formats/posmap.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,765 copying ./formats/bed.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,769 copying ./formats/fastq.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,771 copying ./formats/pdf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,773 copying ./formats/html.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,775 copying ./formats/gff.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,780 copying ./formats/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,781 copying ./formats/coords.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,784 copying ./formats/fasta.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,789 copying ./formats/obo.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,791 copying ./formats/psl.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,794 copying ./formats/vcf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,797 copying ./formats/fpc.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,799 copying ./formats/excel.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,802 copying ./formats/cdt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,804 copying ./formats/genbank.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,807 copying ./formats/blast.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,810 copying ./formats/contig.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,812 copying ./formats/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,814 copying ./formats/chain.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,817 copying ./formats/agp.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,820 copying ./formats/maf.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,822 copying ./formats/sbt.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,824 copying ./formats/sizes.py -> build/lib.linux-armv7l-3.9/jcvi/formats 2021-07-12T16:57:24,828 creating build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,829 copying ./variation/delly.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,832 copying ./variation/impute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,835 copying ./variation/deconvolute.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,838 copying ./variation/phase.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,840 copying ./variation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,842 copying ./variation/snp.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,845 copying ./variation/str.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,849 copying ./variation/cnv.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,853 copying ./variation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,855 copying ./variation/tassel.py -> build/lib.linux-armv7l-3.9/jcvi/variation 2021-07-12T16:57:24,860 creating build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,861 copying ./graphics/base.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,865 copying ./graphics/graph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,867 copying ./graphics/mummerplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,870 copying ./graphics/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,873 copying ./graphics/assembly.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,876 copying ./graphics/tree.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,879 copying ./graphics/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,881 copying ./graphics/histogram.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,884 copying ./graphics/dotplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,887 copying ./graphics/grabseeds.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,890 copying ./graphics/karyotype.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,893 copying ./graphics/blastplot.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,896 copying ./graphics/synteny.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,899 copying ./graphics/align.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,902 copying ./graphics/logo.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,904 copying ./graphics/heatmap.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,907 copying ./graphics/whisker.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,909 copying ./graphics/chromosome.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,913 copying ./graphics/glyph.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,917 copying ./graphics/wheel.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,920 copying ./graphics/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,922 copying ./graphics/landscape.py -> build/lib.linux-armv7l-3.9/jcvi/graphics 2021-07-12T16:57:24,927 creating build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,929 copying ./algorithms/graph.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,932 copying ./algorithms/supermap.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,935 copying ./algorithms/ml.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,938 copying ./algorithms/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,939 copying ./algorithms/maxsum.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,941 copying ./algorithms/lpsolve.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,944 copying ./algorithms/ec.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,948 copying ./algorithms/tsp.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,951 copying ./algorithms/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,953 copying ./algorithms/lis.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,957 copying ./algorithms/matrix.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,960 copying ./algorithms/formula.py -> build/lib.linux-armv7l-3.9/jcvi/algorithms 2021-07-12T16:57:24,965 creating build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,967 copying ./utils/table.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,970 copying ./utils/aws.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,974 copying ./utils/iter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,978 copying ./utils/natsort.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,981 copying ./utils/webcolors.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,986 copying ./utils/brewer2mpl.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,990 copying ./utils/counter.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,993 copying ./utils/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,995 copying ./utils/ez_setup.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:24,999 copying ./utils/grouper.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,001 copying ./utils/progressbar.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,005 copying ./utils/cbook.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,008 copying ./utils/taxonomy.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,011 copying ./utils/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,013 copying ./utils/db.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,016 copying ./utils/range.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,019 copying ./utils/orderedcollections.py -> build/lib.linux-armv7l-3.9/jcvi/utils 2021-07-12T16:57:25,024 creating build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,025 copying ./assembly/base.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,028 copying ./assembly/patch.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,032 copying ./assembly/soap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,035 copying ./assembly/syntenypath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,038 copying ./assembly/trinity.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,040 copying ./assembly/preprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,044 copying ./assembly/coverage.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,047 copying ./assembly/gaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,050 copying ./assembly/goldenpath.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,054 copying ./assembly/geneticmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,057 copying ./assembly/meraculous.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,060 copying ./assembly/bambus.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,062 copying ./assembly/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,064 copying ./assembly/kmer.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,068 copying ./assembly/allpaths.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,071 copying ./assembly/sim.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,074 copying ./assembly/hic.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,079 copying ./assembly/sspace.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,082 copying ./assembly/ca.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,086 copying ./assembly/pbjelly.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,088 copying ./assembly/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,091 copying ./assembly/amos.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,095 copying ./assembly/allmaps.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,100 copying ./assembly/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,102 copying ./assembly/opticalmap.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,105 copying ./assembly/unitig.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,108 copying ./assembly/postprocess.py -> build/lib.linux-armv7l-3.9/jcvi/assembly 2021-07-12T16:57:25,113 creating build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,114 copying ./annotation/stats.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,117 copying ./annotation/depth.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,120 copying ./annotation/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,122 copying ./annotation/evm.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,125 copying ./annotation/train.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,128 copying ./annotation/ahrd.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,132 copying ./annotation/qc.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,135 copying ./annotation/automaton.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,138 copying ./annotation/pasa.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,141 copying ./annotation/__main__.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,142 copying ./annotation/maker.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,145 copying ./annotation/reformat.py -> build/lib.linux-armv7l-3.9/jcvi/annotation 2021-07-12T16:57:25,149 creating build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,150 copying ./utils/data/__init__.py -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,151 running egg_info 2021-07-12T16:57:25,167 writing jcvi.egg-info/PKG-INFO 2021-07-12T16:57:25,170 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-12T16:57:25,172 writing requirements to jcvi.egg-info/requires.txt 2021-07-12T16:57:25,173 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-12T16:57:25,196 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-12T16:57:25,204 reading manifest template 'MANIFEST.in' 2021-07-12T16:57:25,207 adding license file 'LICENSE' 2021-07-12T16:57:25,219 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-12T16:57:25,226 copying ./utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,231 copying ./utils/data/adapters.fasta -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,233 copying ./utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,236 copying ./utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,239 copying ./utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,242 copying ./utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,245 copying ./utils/data/colorbrewer_all_schemes.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,251 copying ./utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,253 copying ./utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,256 copying ./utils/data/instance.json -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,259 copying ./utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,262 copying ./utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,265 copying ./utils/data/blosum80.mat -> build/lib.linux-armv7l-3.9/jcvi/utils/data 2021-07-12T16:57:25,283 running build_ext 2021-07-12T16:57:25,377 skipping 'assembly/chic.c' Cython extension (up-to-date) 2021-07-12T16:57:25,378 cythoning formats/cblast.pyx to formats/cblast.c 2021-07-12T16:57:25,955 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf/formats/cblast.pyx 2021-07-12T16:57:25,956 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T16:57:26,938 building 'jcvi.assembly.chic' extension 2021-07-12T16:57:26,939 creating build/temp.linux-armv7l-3.9 2021-07-12T16:57:26,939 creating build/temp.linux-armv7l-3.9/assembly 2021-07-12T16:57:26,940 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c assembly/chic.c -o build/temp.linux-armv7l-3.9/assembly/chic.o -O3 2021-07-12T16:57:27,342 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T16:57:27,342 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T16:57:27,342 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T16:57:27,342 from assembly/chic.c:435: 2021-07-12T16:57:27,342 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T16:57:27,343 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T16:57:27,343 | ^~~~~~~ 2021-07-12T16:57:27,460 assembly/chic.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T16:57:27,463 assembly/chic.c:6943:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,463 6943 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,463 | ^ 2021-07-12T16:57:27,464 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,464 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,465 from assembly/chic.c:4: 2021-07-12T16:57:27,465 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,465 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,465 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,469 assembly/chic.c:6943:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,469 6943 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,469 | ^ 2021-07-12T16:57:27,469 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,469 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,469 from assembly/chic.c:4: 2021-07-12T16:57:27,469 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T16:57:27,470 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T16:57:27,470 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,472 assembly/chic.c:6943:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,473 6943 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,473 | ^ 2021-07-12T16:57:27,473 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,473 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,473 from assembly/chic.c:4: 2021-07-12T16:57:27,473 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,473 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,474 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,477 assembly/chic.c:6943:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,477 6943 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,477 | ^ 2021-07-12T16:57:27,477 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,477 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,477 from assembly/chic.c:4: 2021-07-12T16:57:27,478 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,478 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,478 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,481 assembly/chic.c:6943:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,481 6943 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,482 | ^ 2021-07-12T16:57:27,482 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,482 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,482 from assembly/chic.c:4: 2021-07-12T16:57:27,482 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T16:57:27,482 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T16:57:27,482 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,486 assembly/chic.c:6943:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,486 6943 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,486 | ^ 2021-07-12T16:57:27,487 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,487 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,487 from assembly/chic.c:4: 2021-07-12T16:57:27,487 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,487 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,487 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,492 assembly/chic.c:6959:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,492 6959 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,493 | ^ 2021-07-12T16:57:27,493 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,493 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,493 from assembly/chic.c:4: 2021-07-12T16:57:27,493 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,493 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,493 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,497 assembly/chic.c:6959:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,497 6959 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,497 | ^ 2021-07-12T16:57:27,497 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,497 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,498 from assembly/chic.c:4: 2021-07-12T16:57:27,498 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T16:57:27,498 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T16:57:27,498 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,501 assembly/chic.c:6959:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,501 6959 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,501 | ^ 2021-07-12T16:57:27,501 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,501 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,501 from assembly/chic.c:4: 2021-07-12T16:57:27,502 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,502 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,502 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,505 assembly/chic.c:6959:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,505 6959 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,505 | ^ 2021-07-12T16:57:27,505 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,505 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,505 from assembly/chic.c:4: 2021-07-12T16:57:27,505 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,506 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,506 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,508 assembly/chic.c:6959:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,509 6959 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,509 | ^ 2021-07-12T16:57:27,509 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,509 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,509 from assembly/chic.c:4: 2021-07-12T16:57:27,509 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T16:57:27,509 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T16:57:27,509 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,512 assembly/chic.c:6959:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T16:57:27,513 6959 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T16:57:27,513 | ^ 2021-07-12T16:57:27,513 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T16:57:27,513 from /usr/include/python3.9/Python.h:97, 2021-07-12T16:57:27,513 from assembly/chic.c:4: 2021-07-12T16:57:27,513 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T16:57:27,513 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T16:57:27,513 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,561 assembly/chic.c: In function ‘__Pyx_PyCFunction_FastCall’: 2021-07-12T16:57:27,564 assembly/chic.c:7644:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’ 2021-07-12T16:57:27,564 7644 | return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); 2021-07-12T16:57:27,565 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T16:57:27,592 assembly/chic.c: In function ‘__Pyx__ExceptionSave’: 2021-07-12T16:57:27,598 assembly/chic.c:8068:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T16:57:27,598 8068 | *type = tstate->exc_type; 2021-07-12T16:57:27,598 | ^~~~~~~~ 2021-07-12T16:57:27,599 | curexc_type 2021-07-12T16:57:27,605 assembly/chic.c:8069:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T16:57:27,605 8069 | *value = tstate->exc_value; 2021-07-12T16:57:27,605 | ^~~~~~~~~ 2021-07-12T16:57:27,605 | curexc_value 2021-07-12T16:57:27,611 assembly/chic.c:8070:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T16:57:27,612 8070 | *tb = tstate->exc_traceback; 2021-07-12T16:57:27,612 | ^~~~~~~~~~~~~ 2021-07-12T16:57:27,612 | curexc_traceback 2021-07-12T16:57:27,612 assembly/chic.c: In function ‘__Pyx__ExceptionReset’: 2021-07-12T16:57:27,618 assembly/chic.c:8077:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T16:57:27,619 8077 | tmp_type = tstate->exc_type; 2021-07-12T16:57:27,619 | ^~~~~~~~ 2021-07-12T16:57:27,619 | curexc_type 2021-07-12T16:57:27,625 assembly/chic.c:8078:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T16:57:27,625 8078 | tmp_value = tstate->exc_value; 2021-07-12T16:57:27,625 | ^~~~~~~~~ 2021-07-12T16:57:27,625 | curexc_value 2021-07-12T16:57:27,632 assembly/chic.c:8079:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T16:57:27,632 8079 | tmp_tb = tstate->exc_traceback; 2021-07-12T16:57:27,632 | ^~~~~~~~~~~~~ 2021-07-12T16:57:27,632 | curexc_traceback 2021-07-12T16:57:27,638 assembly/chic.c:8080:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T16:57:27,639 8080 | tstate->exc_type = type; 2021-07-12T16:57:27,639 | ^~~~~~~~ 2021-07-12T16:57:27,639 | curexc_type 2021-07-12T16:57:27,645 assembly/chic.c:8081:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T16:57:27,645 8081 | tstate->exc_value = value; 2021-07-12T16:57:27,645 | ^~~~~~~~~ 2021-07-12T16:57:27,645 | curexc_value 2021-07-12T16:57:27,652 assembly/chic.c:8082:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T16:57:27,652 8082 | tstate->exc_traceback = tb; 2021-07-12T16:57:27,652 | ^~~~~~~~~~~~~ 2021-07-12T16:57:27,652 | curexc_traceback 2021-07-12T16:57:27,657 assembly/chic.c: In function ‘__Pyx__GetException’: 2021-07-12T16:57:27,664 assembly/chic.c:8137:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T16:57:27,664 8137 | tmp_type = tstate->exc_type; 2021-07-12T16:57:27,664 | ^~~~~~~~ 2021-07-12T16:57:27,664 | curexc_type 2021-07-12T16:57:27,670 assembly/chic.c:8138:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T16:57:27,671 8138 | tmp_value = tstate->exc_value; 2021-07-12T16:57:27,671 | ^~~~~~~~~ 2021-07-12T16:57:27,671 | curexc_value 2021-07-12T16:57:27,677 assembly/chic.c:8139:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T16:57:27,677 8139 | tmp_tb = tstate->exc_traceback; 2021-07-12T16:57:27,677 | ^~~~~~~~~~~~~ 2021-07-12T16:57:27,678 | curexc_traceback 2021-07-12T16:57:27,684 assembly/chic.c:8140:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T16:57:27,684 8140 | tstate->exc_type = local_type; 2021-07-12T16:57:27,684 | ^~~~~~~~ 2021-07-12T16:57:27,684 | curexc_type 2021-07-12T16:57:27,691 assembly/chic.c:8141:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T16:57:27,691 8141 | tstate->exc_value = local_value; 2021-07-12T16:57:27,691 | ^~~~~~~~~ 2021-07-12T16:57:27,691 | curexc_value 2021-07-12T16:57:27,697 assembly/chic.c:8142:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T16:57:27,697 8142 | tstate->exc_traceback = local_tb; 2021-07-12T16:57:27,698 | ^~~~~~~~~~~~~ 2021-07-12T16:57:27,698 | curexc_traceback 2021-07-12T16:57:27,804 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T16:57:27,994 Building wheel for jcvi (setup.py): finished with status 'error' 2021-07-12T16:57:27,995 ERROR: Failed building wheel for jcvi 2021-07-12T16:57:27,995 Running setup.py clean for jcvi 2021-07-12T16:57:27,996 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-27xdzv0i/jcvi_e8b6ea060f054523a424fe616bb56ebf/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T16:57:30,011 running clean 2021-07-12T16:57:30,014 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-12T16:57:30,016 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-12T16:57:30,102 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-12T16:57:30,102 'build/scripts-3.9' does not exist -- can't clean it 2021-07-12T16:57:30,102 removing 'build' 2021-07-12T16:57:30,205 Failed to build jcvi 2021-07-12T16:57:30,206 ERROR: Failed to build one or more wheels 2021-07-12T16:57:30,206 Exception information: 2021-07-12T16:57:30,206 Traceback (most recent call last): 2021-07-12T16:57:30,206 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T16:57:30,206 status = self.run(options, args) 2021-07-12T16:57:30,206 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T16:57:30,206 return func(self, options, args) 2021-07-12T16:57:30,206 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T16:57:30,206 raise CommandError( 2021-07-12T16:57:30,206 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T16:57:30,210 Removed build tracker: '/tmp/pip-req-tracker-27xeh_wc'