2021-07-12T17:21:26,801 Created temporary directory: /tmp/pip-ephem-wheel-cache-javz8x3m 2021-07-12T17:21:26,805 Created temporary directory: /tmp/pip-req-tracker-x71e6qak 2021-07-12T17:21:26,805 Initialized build tracking at /tmp/pip-req-tracker-x71e6qak 2021-07-12T17:21:26,805 Created build tracker: /tmp/pip-req-tracker-x71e6qak 2021-07-12T17:21:26,806 Entered build tracker: /tmp/pip-req-tracker-x71e6qak 2021-07-12T17:21:26,806 Created temporary directory: /tmp/pip-wheel-25l6i3pm 2021-07-12T17:21:26,845 1 location(s) to search for versions of tredparse: 2021-07-12T17:21:26,845 * https://pypi.org/simple/tredparse/ 2021-07-12T17:21:26,846 Fetching project page and analyzing links: https://pypi.org/simple/tredparse/ 2021-07-12T17:21:26,847 Getting page https://pypi.org/simple/tredparse/ 2021-07-12T17:21:26,849 Found index url https://pypi.org/simple 2021-07-12T17:21:26,952 Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz#sha256=bdff54fe29641100d6cadc4f82f765de98447c53bce117bd27626a420b5b04a5 (from https://pypi.org/simple/tredparse/), version: 0.7.5 2021-07-12T17:21:26,953 Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz#sha256=6b86e1537404b62acf063d0e6c7cac173094d4d5a549a9430346b5671dfba514 (from https://pypi.org/simple/tredparse/), version: 0.7.6 2021-07-12T17:21:26,953 Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz#sha256=1aa435d1679ccc2d821e33c2a38fc626bba88178961dd2c8ab8ef761cd3846fc (from https://pypi.org/simple/tredparse/), version: 0.7.7 2021-07-12T17:21:26,954 Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd (from https://pypi.org/simple/tredparse/), version: 0.7.8 2021-07-12T17:21:26,954 Skipping link: not a file: https://pypi.org/simple/tredparse/ 2021-07-12T17:21:26,977 Given no hashes to check 1 links for project 'tredparse': discarding no candidates 2021-07-12T17:21:27,000 Collecting tredparse==0.7.8 2021-07-12T17:21:27,002 Created temporary directory: /tmp/pip-unpack-fvbjt_9x 2021-07-12T17:21:27,377 Downloading tredparse-0.7.8.tar.gz (247 kB) 2021-07-12T17:21:27,525 Added tredparse==0.7.8 from https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd to build tracker '/tmp/pip-req-tracker-x71e6qak' 2021-07-12T17:21:27,527 Running setup.py (path:/tmp/pip-wheel-25l6i3pm/tredparse_b2c7f27808a44f2cae09f8402956a72a/setup.py) egg_info for package tredparse 2021-07-12T17:21:27,527 Created temporary directory: /tmp/pip-pip-egg-info-ol29gcu9 2021-07-12T17:21:27,528 Running command python setup.py egg_info 2021-07-12T17:21:29,021 running egg_info 2021-07-12T17:21:29,023 creating /tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info 2021-07-12T17:21:29,024 writing /tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/PKG-INFO 2021-07-12T17:21:29,028 writing dependency_links to /tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/dependency_links.txt 2021-07-12T17:21:29,030 writing requirements to /tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/requires.txt 2021-07-12T17:21:29,031 writing top-level names to /tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/top_level.txt 2021-07-12T17:21:29,033 writing manifest file '/tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/SOURCES.txt' 2021-07-12T17:21:29,409 reading manifest file '/tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/SOURCES.txt' 2021-07-12T17:21:29,411 reading manifest template 'MANIFEST.in' 2021-07-12T17:21:29,415 adding license file 'LICENSE' 2021-07-12T17:21:29,419 writing manifest file '/tmp/pip-pip-egg-info-ol29gcu9/tredparse.egg-info/SOURCES.txt' 2021-07-12T17:21:29,520 Source in /tmp/pip-wheel-25l6i3pm/tredparse_b2c7f27808a44f2cae09f8402956a72a has version 0.7.8, which satisfies requirement tredparse==0.7.8 from https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd 2021-07-12T17:21:29,521 Removed tredparse==0.7.8 from https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz#sha256=140aa85f1cb2a5e204c9a4f36c4d78afc8f0a54a1336579d507e9decdbf883bd from build tracker '/tmp/pip-req-tracker-x71e6qak' 2021-07-12T17:21:29,527 Created temporary directory: /tmp/pip-unpack-to4b30go 2021-07-12T17:21:29,528 Building wheels for collected packages: tredparse 2021-07-12T17:21:29,532 Created temporary directory: /tmp/pip-wheel-8v0swfwb 2021-07-12T17:21:29,533 Building wheel for tredparse (setup.py): started 2021-07-12T17:21:29,533 Destination directory: /tmp/pip-wheel-8v0swfwb 2021-07-12T17:21:29,534 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-25l6i3pm/tredparse_b2c7f27808a44f2cae09f8402956a72a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-25l6i3pm/tredparse_b2c7f27808a44f2cae09f8402956a72a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8v0swfwb 2021-07-12T17:21:31,027 running bdist_wheel 2021-07-12T17:21:31,208 running build 2021-07-12T17:21:31,208 running build_py 2021-07-12T17:21:31,356 creating build 2021-07-12T17:21:31,356 creating build/lib.linux-armv7l-3.9 2021-07-12T17:21:31,357 creating build/lib.linux-armv7l-3.9/ssw 2021-07-12T17:21:31,358 copying src/__init__.py -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T17:21:31,360 copying src/ssw_wrap.py -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T17:21:31,364 creating build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,365 copying tredparse/tred.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,368 copying tredparse/models.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,370 copying tredparse/jcvi.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,375 copying tredparse/tredplot.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,377 copying tredparse/bam_parser.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,380 copying tredparse/tredreport.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,383 copying tredparse/meta.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,385 copying tredparse/utils.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,388 copying tredparse/__init__.py -> build/lib.linux-armv7l-3.9/tredparse 2021-07-12T17:21:31,390 running egg_info 2021-07-12T17:21:31,405 writing tredparse.egg-info/PKG-INFO 2021-07-12T17:21:31,408 writing dependency_links to tredparse.egg-info/dependency_links.txt 2021-07-12T17:21:31,410 writing requirements to tredparse.egg-info/requires.txt 2021-07-12T17:21:31,411 writing top-level names to tredparse.egg-info/top_level.txt 2021-07-12T17:21:31,419 reading manifest file 'tredparse.egg-info/SOURCES.txt' 2021-07-12T17:21:31,421 reading manifest template 'MANIFEST.in' 2021-07-12T17:21:31,425 adding license file 'LICENSE' 2021-07-12T17:21:31,429 writing manifest file 'tredparse.egg-info/SOURCES.txt' 2021-07-12T17:21:31,433 creating build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,434 copying tredparse/data/HLI_bams.csv.gz -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,441 copying tredparse/data/TREDs.alts.csv -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,446 copying tredparse/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,450 copying tredparse/data/chrY.hg19.unique_ccn.gc -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,453 copying tredparse/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,456 copying tredparse/data/illumina_v3.pcrfree.stepmodel -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,458 copying tredparse/data/illumina_v3.pcrfree.stuttermodel -> build/lib.linux-armv7l-3.9/tredparse/data 2021-07-12T17:21:31,461 copying src/ssw.c -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T17:21:31,464 copying src/ssw.h -> build/lib.linux-armv7l-3.9/ssw 2021-07-12T17:21:31,469 running build_ext 2021-07-12T17:21:31,474 building 'libssw' extension 2021-07-12T17:21:31,474 creating build/temp.linux-armv7l-3.9 2021-07-12T17:21:31,475 creating build/temp.linux-armv7l-3.9/src 2021-07-12T17:21:31,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/ssw.c -o build/temp.linux-armv7l-3.9/src/ssw.o 2021-07-12T17:21:31,534 src/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory 2021-07-12T17:21:31,534 38 | #include 2021-07-12T17:21:31,534 | ^~~~~~~~~~~~~ 2021-07-12T17:21:31,535 compilation terminated. 2021-07-12T17:21:31,539 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T17:21:31,639 Building wheel for tredparse (setup.py): finished with status 'error' 2021-07-12T17:21:31,640 ERROR: Failed building wheel for tredparse 2021-07-12T17:21:31,641 Running setup.py clean for tredparse 2021-07-12T17:21:31,641 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-25l6i3pm/tredparse_b2c7f27808a44f2cae09f8402956a72a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-25l6i3pm/tredparse_b2c7f27808a44f2cae09f8402956a72a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T17:21:33,211 running clean 2021-07-12T17:21:33,213 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-12T17:21:33,216 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-12T17:21:33,227 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-12T17:21:33,228 'build/scripts-3.9' does not exist -- can't clean it 2021-07-12T17:21:33,228 removing 'build' 2021-07-12T17:21:33,311 Failed to build tredparse 2021-07-12T17:21:33,311 ERROR: Failed to build one or more wheels 2021-07-12T17:21:33,312 Exception information: 2021-07-12T17:21:33,312 Traceback (most recent call last): 2021-07-12T17:21:33,312 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T17:21:33,312 status = self.run(options, args) 2021-07-12T17:21:33,312 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T17:21:33,312 return func(self, options, args) 2021-07-12T17:21:33,312 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T17:21:33,312 raise CommandError( 2021-07-12T17:21:33,312 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T17:21:33,316 Removed build tracker: '/tmp/pip-req-tracker-x71e6qak'