2021-07-12T17:49:08,601 Created temporary directory: /tmp/pip-ephem-wheel-cache-1cj09m4d 2021-07-12T17:49:08,607 Created temporary directory: /tmp/pip-req-tracker-_quyxo99 2021-07-12T17:49:08,608 Initialized build tracking at /tmp/pip-req-tracker-_quyxo99 2021-07-12T17:49:08,608 Created build tracker: /tmp/pip-req-tracker-_quyxo99 2021-07-12T17:49:08,609 Entered build tracker: /tmp/pip-req-tracker-_quyxo99 2021-07-12T17:49:08,610 Created temporary directory: /tmp/pip-wheel-n732nw8u 2021-07-12T17:49:08,659 1 location(s) to search for versions of motifscan: 2021-07-12T17:49:08,659 * https://pypi.org/simple/motifscan/ 2021-07-12T17:49:08,659 Fetching project page and analyzing links: https://pypi.org/simple/motifscan/ 2021-07-12T17:49:08,660 Getting page https://pypi.org/simple/motifscan/ 2021-07-12T17:49:08,663 Found index url https://pypi.org/simple 2021-07-12T17:49:08,931 Found link https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 (from https://pypi.org/simple/motifscan/), version: 1.1 2021-07-12T17:49:08,932 Found link https://files.pythonhosted.org/packages/12/fc/0974ba6cbffbbd9d6d4fd6e69f433d3a22c9936d2f85ff01f8d7e573bed9/motifscan-1.1.2.tar.gz#sha256=7ba31fed062fc1d228ac9178383dc12711bf4f65d98ade383eccf23a4abe0099 (from https://pypi.org/simple/motifscan/), version: 1.1.2 2021-07-12T17:49:08,934 Found link https://files.pythonhosted.org/packages/5c/ab/19b9e8656bdc2ee002c2c35f01019bff192a9f9e2ff56da990f5a1bc06c2/motifscan-1.2.0.tar.gz#sha256=2f9d98b4a1f15338bd8d1ce4b78fee379a9864bf9274487f0d744f74e8adef17 (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.2.0 2021-07-12T17:49:08,936 Found link https://files.pythonhosted.org/packages/c1/3c/9c7bcd71c2246cbfaaa78a5c7c6002096a256e00638e4f4df7ed6ec01c7b/motifscan-1.2.1.tar.gz#sha256=304e28989e23e0c8547a3cdce7c49fd31cbe873f6b9614be2e911f1fa1712aba (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.2.1 2021-07-12T17:49:08,937 Found link https://files.pythonhosted.org/packages/b9/5b/c6c585bab0dac094e112b9620c5b93e8fe7a69bda6317371894569c29259/motifscan-1.2.2.tar.gz#sha256=90259b116220f6448ddc7ce9578cc56c39a38ba792602acc04633d5a77bf7a65 (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.2.2 2021-07-12T17:49:08,939 Found link https://files.pythonhosted.org/packages/a9/25/9f149660e79c145c6bcc9a9d4ceb35f8c3eff10dcddce37014663c062d3d/motifscan-1.3.0.tar.gz#sha256=8059ab3232dfe7580835c5e953a8edd3f843676d57a6afbc41c5518a8a4dfde2 (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.3.0 2021-07-12T17:49:08,940 Skipping link: not a file: https://pypi.org/simple/motifscan/ 2021-07-12T17:49:09,009 Given no hashes to check 1 links for project 'motifscan': discarding no candidates 2021-07-12T17:49:09,095 Collecting motifscan==1.1 2021-07-12T17:49:09,099 Created temporary directory: /tmp/pip-unpack-7e_ea78o 2021-07-12T17:49:10,451 Downloading motifscan-1.1.tar.gz (11.5 MB) 2021-07-12T17:49:14,937 Added motifscan==1.1 from https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 to build tracker '/tmp/pip-req-tracker-_quyxo99' 2021-07-12T17:49:14,939 Running setup.py (path:/tmp/pip-wheel-n732nw8u/motifscan_73b4386ed74649d8919b748e9bb41e25/setup.py) egg_info for package motifscan 2021-07-12T17:49:14,940 Created temporary directory: /tmp/pip-pip-egg-info-ep_fscuu 2021-07-12T17:49:14,940 Running command python setup.py egg_info 2021-07-12T17:49:16,609 running egg_info 2021-07-12T17:49:16,613 creating /tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info 2021-07-12T17:49:16,615 writing /tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/PKG-INFO 2021-07-12T17:49:16,619 writing dependency_links to /tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/dependency_links.txt 2021-07-12T17:49:16,623 writing requirements to /tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/requires.txt 2021-07-12T17:49:16,625 writing top-level names to /tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/top_level.txt 2021-07-12T17:49:16,628 writing manifest file '/tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/SOURCES.txt' 2021-07-12T17:49:17,128 reading manifest file '/tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/SOURCES.txt' 2021-07-12T17:49:17,130 reading manifest template 'MANIFEST.in' 2021-07-12T17:49:17,170 adding license file 'LICENSE' 2021-07-12T17:49:17,174 writing manifest file '/tmp/pip-pip-egg-info-ep_fscuu/motifscan.egg-info/SOURCES.txt' 2021-07-12T17:49:17,283 Source in /tmp/pip-wheel-n732nw8u/motifscan_73b4386ed74649d8919b748e9bb41e25 has version 1.1, which satisfies requirement motifscan==1.1 from https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 2021-07-12T17:49:17,284 Removed motifscan==1.1 from https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 from build tracker '/tmp/pip-req-tracker-_quyxo99' 2021-07-12T17:49:17,295 Created temporary directory: /tmp/pip-unpack-x7ng1mz3 2021-07-12T17:49:17,296 Building wheels for collected packages: motifscan 2021-07-12T17:49:17,308 Created temporary directory: /tmp/pip-wheel-jyc1puf2 2021-07-12T17:49:17,309 Building wheel for motifscan (setup.py): started 2021-07-12T17:49:17,309 Destination directory: /tmp/pip-wheel-jyc1puf2 2021-07-12T17:49:17,310 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-n732nw8u/motifscan_73b4386ed74649d8919b748e9bb41e25/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-n732nw8u/motifscan_73b4386ed74649d8919b748e9bb41e25/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jyc1puf2 2021-07-12T17:49:19,165 running bdist_wheel 2021-07-12T17:49:19,425 running build 2021-07-12T17:49:19,426 running build_py 2021-07-12T17:49:19,629 creating build 2021-07-12T17:49:19,630 creating build/lib.linux-armv7l-3.9 2021-07-12T17:49:19,631 creating build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,633 copying motifscan/plot.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,637 copying motifscan/core.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,640 copying motifscan/stats.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,643 copying motifscan/enrich.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,646 copying motifscan/__init__.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,649 copying motifscan/_version.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,652 copying motifscan/utils.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,655 copying motifscan/workflow.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,659 creating build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,660 copying motifscan/io/constants.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,663 copying motifscan/io/outputwriter.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,667 copying motifscan/io/geneio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,670 copying motifscan/io/motifio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,674 copying motifscan/io/__init__.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,676 copying motifscan/io/peakio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,679 copying motifscan/io/genomeio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-12T17:49:19,683 creating build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,685 copying motifscan/lib/matrix.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,688 copying motifscan/lib/peak.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,691 copying motifscan/lib/genome.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,694 copying motifscan/lib/motif.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,697 copying motifscan/lib/__init__.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,702 running build_ext 2021-07-12T17:49:19,710 building 'motifscan.score_c' extension 2021-07-12T17:49:19,711 creating build/temp.linux-armv7l-3.9 2021-07-12T17:49:19,712 creating build/temp.linux-armv7l-3.9/motifscan 2021-07-12T17:49:19,713 creating build/temp.linux-armv7l-3.9/motifscan/lib 2021-07-12T17:49:19,714 g++ -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c motifscan/lib/score.cpp -o build/temp.linux-armv7l-3.9/motifscan/lib/score.o 2021-07-12T17:49:21,134 motifscan/lib/score.cpp: In function ‘MAT* expandMAT(double*, size_t)’: 2021-07-12T17:49:21,134 motifscan/lib/score.cpp:83:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T17:49:21,135 83 | for(i=0;i build/scripts-3.9 2021-07-12T17:49:22,618 copying and adjusting bin/motifcompile -> build/scripts-3.9 2021-07-12T17:49:22,621 copying and adjusting bin/genomecompile -> build/scripts-3.9 2021-07-12T17:49:22,623 changing mode of build/scripts-3.9/motifscan from 644 to 755 2021-07-12T17:49:22,623 changing mode of build/scripts-3.9/motifcompile from 644 to 755 2021-07-12T17:49:22,624 changing mode of build/scripts-3.9/genomecompile from 644 to 755 2021-07-12T17:49:22,637 installing to build/bdist.linux-armv7l/wheel 2021-07-12T17:49:22,637 running install 2021-07-12T17:49:22,639 running install_lib 2021-07-12T17:49:22,646 creating build/bdist.linux-armv7l 2021-07-12T17:49:22,646 creating build/bdist.linux-armv7l/wheel 2021-07-12T17:49:22,650 creating build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,651 copying build/lib.linux-armv7l-3.9/motifscan/plot.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,656 copying build/lib.linux-armv7l-3.9/motifscan/core.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,661 creating build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,663 copying build/lib.linux-armv7l-3.9/motifscan/io/constants.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,666 copying build/lib.linux-armv7l-3.9/motifscan/io/outputwriter.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,670 copying build/lib.linux-armv7l-3.9/motifscan/io/geneio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,673 copying build/lib.linux-armv7l-3.9/motifscan/io/motifio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,677 copying build/lib.linux-armv7l-3.9/motifscan/io/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,679 copying build/lib.linux-armv7l-3.9/motifscan/io/peakio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,682 copying build/lib.linux-armv7l-3.9/motifscan/io/genomeio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-12T17:49:22,686 copying build/lib.linux-armv7l-3.9/motifscan/stats.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,689 copying build/lib.linux-armv7l-3.9/motifscan/enrich.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,694 creating build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-12T17:49:22,696 copying build/lib.linux-armv7l-3.9/motifscan/lib/matrix.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-12T17:49:22,699 copying build/lib.linux-armv7l-3.9/motifscan/lib/peak.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-12T17:49:22,713 copying build/lib.linux-armv7l-3.9/motifscan/lib/genome.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-12T17:49:22,718 copying build/lib.linux-armv7l-3.9/motifscan/lib/motif.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-12T17:49:22,722 copying build/lib.linux-armv7l-3.9/motifscan/lib/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-12T17:49:22,725 copying build/lib.linux-armv7l-3.9/motifscan/score_c.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,730 copying build/lib.linux-armv7l-3.9/motifscan/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,733 copying build/lib.linux-armv7l-3.9/motifscan/_version.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,736 copying build/lib.linux-armv7l-3.9/motifscan/utils.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,739 copying build/lib.linux-armv7l-3.9/motifscan/workflow.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-12T17:49:22,742 running install_egg_info 2021-07-12T17:49:22,776 running egg_info 2021-07-12T17:49:22,777 writing motifscan.egg-info/PKG-INFO 2021-07-12T17:49:22,780 writing dependency_links to motifscan.egg-info/dependency_links.txt 2021-07-12T17:49:22,783 writing requirements to motifscan.egg-info/requires.txt 2021-07-12T17:49:22,784 writing top-level names to motifscan.egg-info/top_level.txt 2021-07-12T17:49:22,794 reading manifest file 'motifscan.egg-info/SOURCES.txt' 2021-07-12T17:49:22,800 reading manifest template 'MANIFEST.in' 2021-07-12T17:49:22,839 adding license file 'LICENSE' 2021-07-12T17:49:22,845 writing manifest file 'motifscan.egg-info/SOURCES.txt' 2021-07-12T17:49:22,847 Copying motifscan.egg-info to build/bdist.linux-armv7l/wheel/motifscan-1.1-py3.9.egg-info 2021-07-12T17:49:22,897 running install_scripts 2021-07-12T17:49:23,051 creating build/bdist.linux-armv7l/wheel/motifscan-1.1.data 2021-07-12T17:49:23,051 creating build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts 2021-07-12T17:49:23,053 copying build/scripts-3.9/genomecompile -> build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts 2021-07-12T17:49:23,056 copying build/scripts-3.9/motifcompile -> build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts 2021-07-12T17:49:23,059 copying build/scripts-3.9/motifscan -> build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts 2021-07-12T17:49:23,062 changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts/genomecompile to 755 2021-07-12T17:49:23,063 changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts/motifcompile to 755 2021-07-12T17:49:23,063 changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.data/scripts/motifscan to 755 2021-07-12T17:49:23,097 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-12T17:49:23,107 creating build/bdist.linux-armv7l/wheel/motifscan-1.1.dist-info/WHEEL 2021-07-12T17:49:23,112 creating '/tmp/pip-wheel-jyc1puf2/motifscan-1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T17:49:23,116 adding 'motifscan/__init__.py' 2021-07-12T17:49:23,118 adding 'motifscan/_version.py' 2021-07-12T17:49:23,120 adding 'motifscan/core.py' 2021-07-12T17:49:23,122 adding 'motifscan/enrich.py' 2021-07-12T17:49:23,125 adding 'motifscan/plot.py' 2021-07-12T17:49:23,135 adding 'motifscan/score_c.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T17:49:23,137 adding 'motifscan/stats.py' 2021-07-12T17:49:23,139 adding 'motifscan/utils.py' 2021-07-12T17:49:23,142 adding 'motifscan/workflow.py' 2021-07-12T17:49:23,154 adding 'motifscan/io/__init__.py' 2021-07-12T17:49:23,156 adding 'motifscan/io/constants.py' 2021-07-12T17:49:23,158 adding 'motifscan/io/geneio.py' 2021-07-12T17:49:23,160 adding 'motifscan/io/genomeio.py' 2021-07-12T17:49:23,162 adding 'motifscan/io/motifio.py' 2021-07-12T17:49:23,174 adding 'motifscan/io/outputwriter.py' 2021-07-12T17:49:23,176 adding 'motifscan/io/peakio.py' 2021-07-12T17:49:23,178 adding 'motifscan/lib/__init__.py' 2021-07-12T17:49:23,180 adding 'motifscan/lib/genome.py' 2021-07-12T17:49:23,183 adding 'motifscan/lib/matrix.py' 2021-07-12T17:49:23,194 adding 'motifscan/lib/motif.py' 2021-07-12T17:49:23,197 adding 'motifscan/lib/peak.py' 2021-07-12T17:49:23,201 adding 'motifscan-1.1.data/scripts/genomecompile' 2021-07-12T17:49:23,214 adding 'motifscan-1.1.data/scripts/motifcompile' 2021-07-12T17:49:23,216 adding 'motifscan-1.1.data/scripts/motifscan' 2021-07-12T17:49:23,225 adding 'motifscan-1.1.dist-info/LICENSE' 2021-07-12T17:49:23,227 adding 'motifscan-1.1.dist-info/METADATA' 2021-07-12T17:49:23,229 adding 'motifscan-1.1.dist-info/WHEEL' 2021-07-12T17:49:23,230 adding 'motifscan-1.1.dist-info/top_level.txt' 2021-07-12T17:49:23,232 adding 'motifscan-1.1.dist-info/RECORD' 2021-07-12T17:49:23,234 removing build/bdist.linux-armv7l/wheel 2021-07-12T17:49:23,384 Building wheel for motifscan (setup.py): finished with status 'done' 2021-07-12T17:49:23,389 Created wheel for motifscan: filename=motifscan-1.1-cp39-cp39-linux_armv7l.whl size=68678 sha256=0fa1c17ffeabbe549bf79aeff300fb99e79ba1d13674c7d5259d39f95d8b12b2 2021-07-12T17:49:23,390 Stored in directory: /tmp/pip-ephem-wheel-cache-1cj09m4d/wheels/3c/b1/13/7ccbfc2fe3fec1f3074f9396dcc360e9533ff8c8f28ecbc443 2021-07-12T17:49:23,424 Successfully built motifscan 2021-07-12T17:49:23,440 Removed build tracker: '/tmp/pip-req-tracker-_quyxo99'