2021-07-12T18:02:31,323 Created temporary directory: /tmp/pip-ephem-wheel-cache-nprs98wx
2021-07-12T18:02:31,326 Created temporary directory: /tmp/pip-req-tracker-ykop07j4
2021-07-12T18:02:31,327 Initialized build tracking at /tmp/pip-req-tracker-ykop07j4
2021-07-12T18:02:31,327 Created build tracker: /tmp/pip-req-tracker-ykop07j4
2021-07-12T18:02:31,327 Entered build tracker: /tmp/pip-req-tracker-ykop07j4
2021-07-12T18:02:31,328 Created temporary directory: /tmp/pip-wheel-littyx8p
2021-07-12T18:02:31,357 1 location(s) to search for versions of sshmm:
2021-07-12T18:02:31,357 * https://pypi.org/simple/sshmm/
2021-07-12T18:02:31,358 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/
2021-07-12T18:02:31,358 Getting page https://pypi.org/simple/sshmm/
2021-07-12T18:02:31,360 Found index url https://pypi.org/simple
2021-07-12T18:02:31,470   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/)
2021-07-12T18:02:31,471   Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1
2021-07-12T18:02:31,471   Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2
2021-07-12T18:02:31,471   Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3
2021-07-12T18:02:31,472   Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4
2021-07-12T18:02:31,472   Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0
2021-07-12T18:02:31,472   Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1
2021-07-12T18:02:31,473   Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2
2021-07-12T18:02:31,473   Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4
2021-07-12T18:02:31,473   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/)
2021-07-12T18:02:31,473   Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5
2021-07-12T18:02:31,474   Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6
2021-07-12T18:02:31,474   Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7
2021-07-12T18:02:31,474 Skipping link: not a file: https://pypi.org/simple/sshmm/
2021-07-12T18:02:31,476 Given no hashes to check 1 links for project 'sshmm': discarding no candidates
2021-07-12T18:02:31,495 Collecting sshmm==1.0.4
2021-07-12T18:02:31,497   Created temporary directory: /tmp/pip-unpack-7wxo05kb
2021-07-12T18:02:31,808   Downloading sshmm-1.0.4.tar.gz (102 kB)
2021-07-12T18:02:31,922   Added sshmm==1.0.4 from https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f to build tracker '/tmp/pip-req-tracker-ykop07j4'
2021-07-12T18:02:31,923     Running setup.py (path:/tmp/pip-wheel-littyx8p/sshmm_8b6467f7b49e4b79a9d1901d07b52efc/setup.py) egg_info for package sshmm
2021-07-12T18:02:31,924     Created temporary directory: /tmp/pip-pip-egg-info-eb60s6pf
2021-07-12T18:02:31,925     Running command python setup.py egg_info
2021-07-12T18:02:32,996     running egg_info
2021-07-12T18:02:32,999     creating /tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info
2021-07-12T18:02:33,000     writing /tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/PKG-INFO
2021-07-12T18:02:33,003     writing dependency_links to /tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/dependency_links.txt
2021-07-12T18:02:33,005     writing requirements to /tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/requires.txt
2021-07-12T18:02:33,006     writing top-level names to /tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/top_level.txt
2021-07-12T18:02:33,008     writing manifest file '/tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/SOURCES.txt'
2021-07-12T18:02:33,329     reading manifest file '/tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/SOURCES.txt'
2021-07-12T18:02:33,333     writing manifest file '/tmp/pip-pip-egg-info-eb60s6pf/sshmm.egg-info/SOURCES.txt'
2021-07-12T18:02:33,408   Source in /tmp/pip-wheel-littyx8p/sshmm_8b6467f7b49e4b79a9d1901d07b52efc has version 1.0.4, which satisfies requirement sshmm==1.0.4 from https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f
2021-07-12T18:02:33,409   Removed sshmm==1.0.4 from https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f from build tracker '/tmp/pip-req-tracker-ykop07j4'
2021-07-12T18:02:33,416 Created temporary directory: /tmp/pip-unpack-cjhxm4i2
2021-07-12T18:02:33,417 Building wheels for collected packages: sshmm
2021-07-12T18:02:33,420   Created temporary directory: /tmp/pip-wheel-ayy2jwq_
2021-07-12T18:02:33,421   Building wheel for sshmm (setup.py): started
2021-07-12T18:02:33,421   Destination directory: /tmp/pip-wheel-ayy2jwq_
2021-07-12T18:02:33,421   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-littyx8p/sshmm_8b6467f7b49e4b79a9d1901d07b52efc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-littyx8p/sshmm_8b6467f7b49e4b79a9d1901d07b52efc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ayy2jwq_
2021-07-12T18:02:34,514   running bdist_wheel
2021-07-12T18:02:34,668   running build
2021-07-12T18:02:34,668   running build_py
2021-07-12T18:02:34,806   creating build
2021-07-12T18:02:34,806   creating build/lib.linux-armv7l-3.9
2021-07-12T18:02:34,807   creating build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,808   copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,810   copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,813   copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,815   copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,816   copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,820   copying sshmm/SimpleQueue.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,821   copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,823   copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,825   copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,828   copying sshmm/log.py -> build/lib.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,831   creating build/lib.linux-armv7l-3.9/sshmm/img
2021-07-12T18:02:34,832   copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img
2021-07-12T18:02:34,835   copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img
2021-07-12T18:02:34,838   copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img
2021-07-12T18:02:34,841   copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img
2021-07-12T18:02:34,845   copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img
2021-07-12T18:02:34,848   running build_ext
2021-07-12T18:02:34,854   building 'cEstimate' extension
2021-07-12T18:02:34,855   creating build/temp.linux-armv7l-3.9
2021-07-12T18:02:34,855   creating build/temp.linux-armv7l-3.9/sshmm
2021-07-12T18:02:34,856   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o
2021-07-12T18:02:35,254   sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’:
2021-07-12T18:02:35,254   sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration]
2021-07-12T18:02:35,254     926 |     __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
2021-07-12T18:02:35,254         |                 ^~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,255   sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2021-07-12T18:02:35,255     926 |     __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
2021-07-12T18:02:35,255         |               ^
2021-07-12T18:02:35,271   sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T18:02:35,272   sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,272    2245 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,272         |                     ^
2021-07-12T18:02:35,272   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,273                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,273                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,273   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,273     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,273         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,274   sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,274    2245 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,274         |                     ^
2021-07-12T18:02:35,274   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,274                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,275                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,275   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T18:02:35,275     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T18:02:35,275         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,275   sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,276    2245 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,276         |                     ^
2021-07-12T18:02:35,276   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,276                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,276                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,276   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,276     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,276         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,277   sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,277    2245 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,277         |                     ^
2021-07-12T18:02:35,277   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,278                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,278                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,278   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,278     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,278         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,279   sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,279    2245 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,279         |                     ^
2021-07-12T18:02:35,279   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,279                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,279                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,279   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T18:02:35,279     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T18:02:35,280         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,280   sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,280    2245 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,280         |                     ^
2021-07-12T18:02:35,281   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,281                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,281                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,281   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,281     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,281         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,283   sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,283    2261 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,283         |                         ^
2021-07-12T18:02:35,283   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,283                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,283                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,283   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,283     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,283         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,284   sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,284    2261 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,284         |                         ^
2021-07-12T18:02:35,284   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,285                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,285                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,285   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T18:02:35,285     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T18:02:35,285         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,286   sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,286    2261 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,286         |                         ^
2021-07-12T18:02:35,286   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,286                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,286                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,286   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,286     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,287         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,287   sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,287    2261 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,287         |                         ^
2021-07-12T18:02:35,288   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,288                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,288                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,288   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,288     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,288         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,289   sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,289    2261 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,289         |                         ^
2021-07-12T18:02:35,289   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,289                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,289                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,290   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T18:02:35,290     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T18:02:35,290         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:35,290   sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:02:35,291    2261 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T18:02:35,291         |                         ^
2021-07-12T18:02:35,291   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T18:02:35,291                    from /usr/include/python3.9/Python.h:97,
2021-07-12T18:02:35,291                    from sshmm/cEstimate.c:24:
2021-07-12T18:02:35,291   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T18:02:35,291     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T18:02:35,291         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T18:02:36,446   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so
2021-07-12T18:02:36,558   running build_scripts
2021-07-12T18:02:36,559   creating build/scripts-3.9
2021-07-12T18:02:36,560   copying and adjusting bin/preprocess_dataset -> build/scripts-3.9
2021-07-12T18:02:36,563   copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9
2021-07-12T18:02:36,565   copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9
2021-07-12T18:02:36,567   changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755
2021-07-12T18:02:36,567   changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755
2021-07-12T18:02:36,567   changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755
2021-07-12T18:02:36,575   installing to build/bdist.linux-armv7l/wheel
2021-07-12T18:02:36,575   running install
2021-07-12T18:02:36,576   running install_lib
2021-07-12T18:02:36,580   creating build/bdist.linux-armv7l
2021-07-12T18:02:36,581   creating build/bdist.linux-armv7l/wheel
2021-07-12T18:02:36,583   creating build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,584   copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,586   copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,588   copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,591   copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,593   copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,596   copying build/lib.linux-armv7l-3.9/sshmm/SimpleQueue.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,597   copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,601   copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,604   copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,607   copying build/lib.linux-armv7l-3.9/sshmm/log.py -> build/bdist.linux-armv7l/wheel/sshmm
2021-07-12T18:02:36,611   creating build/bdist.linux-armv7l/wheel/sshmm/img
2021-07-12T18:02:36,612   copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img
2021-07-12T18:02:36,614   copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img
2021-07-12T18:02:36,617   copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img
2021-07-12T18:02:36,620   copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img
2021-07-12T18:02:36,622   copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img
2021-07-12T18:02:36,625   copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T18:02:36,629   running install_egg_info
2021-07-12T18:02:36,653   running egg_info
2021-07-12T18:02:36,654   writing sshmm.egg-info/PKG-INFO
2021-07-12T18:02:36,656   writing dependency_links to sshmm.egg-info/dependency_links.txt
2021-07-12T18:02:36,658   writing requirements to sshmm.egg-info/requires.txt
2021-07-12T18:02:36,659   writing top-level names to sshmm.egg-info/top_level.txt
2021-07-12T18:02:36,664   reading manifest file 'sshmm.egg-info/SOURCES.txt'
2021-07-12T18:02:36,669   writing manifest file 'sshmm.egg-info/SOURCES.txt'
2021-07-12T18:02:36,670   Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.4-py3.9.egg-info
2021-07-12T18:02:36,683   running install_scripts
2021-07-12T18:02:36,742   creating build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data
2021-07-12T18:02:36,743   creating build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts
2021-07-12T18:02:36,744   copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts
2021-07-12T18:02:36,746   copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts
2021-07-12T18:02:36,749   copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts
2021-07-12T18:02:36,751   changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts/batch_seqstructhmm to 755
2021-07-12T18:02:36,751   changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts/preprocess_dataset to 755
2021-07-12T18:02:36,751   changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.4.data/scripts/train_seqstructhmm to 755
2021-07-12T18:02:36,777   creating build/bdist.linux-armv7l/wheel/sshmm-1.0.4.dist-info/WHEEL
2021-07-12T18:02:36,780   creating '/tmp/pip-wheel-ayy2jwq_/sshmm-1.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T18:02:36,800   adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T18:02:36,805   adding 'sshmm/MyHMM.py'
2021-07-12T18:02:36,807   adding 'sshmm/SimpleQueue.py'
2021-07-12T18:02:36,808   adding 'sshmm/__init__.py'
2021-07-12T18:02:36,810   adding 'sshmm/log.py'
2021-07-12T18:02:36,811   adding 'sshmm/pwm.py'
2021-07-12T18:02:36,812   adding 'sshmm/seq_hmm.py'
2021-07-12T18:02:36,815   adding 'sshmm/seqstructhmm.py'
2021-07-12T18:02:36,817   adding 'sshmm/sequence_container.py'
2021-07-12T18:02:36,819   adding 'sshmm/setup.py'
2021-07-12T18:02:36,820   adding 'sshmm/structure_prediction.py'
2021-07-12T18:02:36,823   adding 'sshmm/img/A.png'
2021-07-12T18:02:36,826   adding 'sshmm/img/C.png'
2021-07-12T18:02:36,828   adding 'sshmm/img/G.png'
2021-07-12T18:02:36,830   adding 'sshmm/img/T.png'
2021-07-12T18:02:36,832   adding 'sshmm/img/U.png'
2021-07-12T18:02:36,835   adding 'sshmm-1.0.4.data/scripts/batch_seqstructhmm'
2021-07-12T18:02:36,837   adding 'sshmm-1.0.4.data/scripts/preprocess_dataset'
2021-07-12T18:02:36,839   adding 'sshmm-1.0.4.data/scripts/train_seqstructhmm'
2021-07-12T18:02:36,841   adding 'sshmm-1.0.4.dist-info/METADATA'
2021-07-12T18:02:36,842   adding 'sshmm-1.0.4.dist-info/WHEEL'
2021-07-12T18:02:36,843   adding 'sshmm-1.0.4.dist-info/top_level.txt'
2021-07-12T18:02:36,844   adding 'sshmm-1.0.4.dist-info/RECORD'
2021-07-12T18:02:36,848   removing build/bdist.linux-armv7l/wheel
2021-07-12T18:02:36,945   Building wheel for sshmm (setup.py): finished with status 'done'
2021-07-12T18:02:36,948   Created wheel for sshmm: filename=sshmm-1.0.4-cp39-cp39-linux_armv7l.whl size=128303 sha256=3c9754fed173b166e1aa959666ffe669749c984cf6230f14e90d3ffd1ebc5f91
2021-07-12T18:02:36,949   Stored in directory: /tmp/pip-ephem-wheel-cache-nprs98wx/wheels/df/ba/48/f5703f01119f0c4048e44b1ace6e1f317a76eea3e9a25f72b3
2021-07-12T18:02:36,958 Successfully built sshmm
2021-07-12T18:02:36,967 Removed build tracker: '/tmp/pip-req-tracker-ykop07j4'