2021-07-12T18:34:50,099 Created temporary directory: /tmp/pip-ephem-wheel-cache-dp36rexs
2021-07-12T18:34:50,102 Created temporary directory: /tmp/pip-req-tracker-mbqoaipx
2021-07-12T18:34:50,102 Initialized build tracking at /tmp/pip-req-tracker-mbqoaipx
2021-07-12T18:34:50,102 Created build tracker: /tmp/pip-req-tracker-mbqoaipx
2021-07-12T18:34:50,103 Entered build tracker: /tmp/pip-req-tracker-mbqoaipx
2021-07-12T18:34:50,103 Created temporary directory: /tmp/pip-wheel-rzi8jbsb
2021-07-12T18:34:50,132 1 location(s) to search for versions of velocyto:
2021-07-12T18:34:50,132 * https://pypi.org/simple/velocyto/
2021-07-12T18:34:50,133 Fetching project page and analyzing links: https://pypi.org/simple/velocyto/
2021-07-12T18:34:50,133 Getting page https://pypi.org/simple/velocyto/
2021-07-12T18:34:50,135 Found index url https://pypi.org/simple
2021-07-12T18:34:50,239   Found link https://files.pythonhosted.org/packages/77/4b/0c6edc45fa07c90dc1d2cfc12d28153caebd383868291c3d8eeec30ed36c/velocyto-0.9.7.tar.gz#sha256=b2e417b05801f1d7bbc03460ba416b514829c9acd76ba54003eb194328d2573f (from https://pypi.org/simple/velocyto/), version: 0.9.7
2021-07-12T18:34:50,239   Found link https://files.pythonhosted.org/packages/3f/39/85650fafac9b550166c14443b9bfb9ec2f03fdad5385ae55e5f4b204b084/velocyto-0.9.8.tar.gz#sha256=b6c68367c05fbf4aa0f25ac91e9932f705858fc3fdfa1d05e48d539e86afcdde (from https://pypi.org/simple/velocyto/), version: 0.9.8
2021-07-12T18:34:50,239   Found link https://files.pythonhosted.org/packages/7d/c9/dfb0bff0119c091553f8f9fb52b5186b543a163c49f6d1289d3ab2ada664/velocyto-0.9.9.tar.gz#sha256=94186e1da837d8ad0ef2645cdafe43c0da3fc6da0ecf856657477aea12d9710a (from https://pypi.org/simple/velocyto/), version: 0.9.9
2021-07-12T18:34:50,240   Found link https://files.pythonhosted.org/packages/d0/44/b67f1247730218271b51e688ff12a273fa8c6528843d9af7c93adafa2254/velocyto-0.9.10.tar.gz#sha256=4ade71ca80b1da43b47e451dc45e19bed39cf0a182b6cb54bd9e84ebb51aa8cf (from https://pypi.org/simple/velocyto/), version: 0.9.10
2021-07-12T18:34:50,240   Found link https://files.pythonhosted.org/packages/8c/f2/7545130f6a8aa662b2d735cd0d85e1998ffe030cf4e2bcc57c5ede2bc7df/velocyto-0.9.11.tar.gz#sha256=4dcade13be6db7400cc219b5e5d37d32bca83c2a422cb1cfff9b63a114756d19 (from https://pypi.org/simple/velocyto/), version: 0.9.11
2021-07-12T18:34:50,240   Found link https://files.pythonhosted.org/packages/cc/83/34185de1ffbdb47be427a6911549c7ee84ee7e965174cfab57ae14a89089/velocyto-0.9.13.tar.gz#sha256=87443c88605c9a915458395fc3f2a9a2563786d42d96067fb7aabe15ee665ff8 (from https://pypi.org/simple/velocyto/), version: 0.9.13
2021-07-12T18:34:50,241   Found link https://files.pythonhosted.org/packages/73/02/6e35a9bbf0b25dfc00907acadfa999e8f19191a1bb9562a38859faf89887/velocyto-0.10.1.tar.gz#sha256=75fd9f09de184539c7091d07f269c7e8d8a7d5203af7b40f74c10fbf1c516322 (from https://pypi.org/simple/velocyto/), version: 0.10.1
2021-07-12T18:34:50,241   Found link https://files.pythonhosted.org/packages/78/71/10dbd49f9e69f72b0a66e617df0b58365a973df3d81756a374a371aa6d29/velocyto-0.10.2.tar.gz#sha256=a6cd73e9d417ea02a264779d280ffa62c8766d1b05132282b5f572dadf9e7d0b (from https://pypi.org/simple/velocyto/), version: 0.10.2
2021-07-12T18:34:50,241   Found link https://files.pythonhosted.org/packages/d8/cd/916653e632b49440984fec70536475392af6c5d7fc7f21dd83241548df20/velocyto-0.10.3.tar.gz#sha256=2c40cbc840aca7ce89e4a23827d134923d9a5aed0dcfe1fc38ab3d50d1cce03a (from https://pypi.org/simple/velocyto/), version: 0.10.3
2021-07-12T18:34:50,241   Found link https://files.pythonhosted.org/packages/b6/58/5fabd02bd24530ed9dc282709bfe708065d3efdfef320277548034ab9593/velocyto-0.11.0.tar.gz#sha256=1602da7eb65b7ec14da2fb2dbcda4bee6e864bbede721765e2a662a8172bd8ea (from https://pypi.org/simple/velocyto/), version: 0.11.0
2021-07-12T18:34:50,242   Found link https://files.pythonhosted.org/packages/5a/43/f59e660cca73d5c6f737b570a69457139a711f8b5f0ce8914291c47fc80c/velocyto-0.12.0.tar.gz#sha256=c74581022798c826514c5b031c37543b5e31717c63d337604826ad57439c2335 (from https://pypi.org/simple/velocyto/), version: 0.12.0
2021-07-12T18:34:50,242   Found link https://files.pythonhosted.org/packages/0c/91/5700b2bddf8095bcbb6ae2de1ca29081d7c88f207dd7f4fe0ec3e2b24c3e/velocyto-0.12.1.tar.gz#sha256=6e9962acf19dab8431cb3eebf98cf532df4bea3f49135ec3a06b0a90c3e4118c (from https://pypi.org/simple/velocyto/), version: 0.12.1
2021-07-12T18:34:50,242   Found link https://files.pythonhosted.org/packages/ad/49/3ccd6bcc1259ec73cd5ba3dd3a3f114e02d3386028d8e7c3443898f348a6/velocyto-0.12.2.tar.gz#sha256=5e3a6b4a2c315a4e633b4911d6231e081b48c4ae71f846926343ce3d911418a6 (from https://pypi.org/simple/velocyto/), version: 0.12.2
2021-07-12T18:34:50,243   Found link https://files.pythonhosted.org/packages/8c/41/4777fc98cd2b18c5ec001ac03519636a4dbc37fcef1394a9e64e87da6874/velocyto-0.12.3.tar.gz#sha256=813e86b88b0a2ad8468885c227916f17cb2bcf6bc3c0c1344b1513975a28163e (from https://pypi.org/simple/velocyto/), version: 0.12.3
2021-07-12T18:34:50,243   Found link https://files.pythonhosted.org/packages/67/84/81a35b4b6a1a556b099dbe87a8942f11b3fc661c6100e362e97b8b8fae81/velocyto-0.12.4.tar.gz#sha256=e82fa669fe83f9439df8b156f4f68beff14118b6b2198ac27667033e807d842d (from https://pypi.org/simple/velocyto/), version: 0.12.4
2021-07-12T18:34:50,243   Found link https://files.pythonhosted.org/packages/d6/fa/e57b530807b43d8e5ab0cbaeae32353f5e51717cb9ca5f3794716970cb15/velocyto-0.13.0.tar.gz#sha256=c6f795299c7a709fa5cb9ec1f52c2b0567b3e9a793f2c97d49af4d5348207f58 (from https://pypi.org/simple/velocyto/), version: 0.13.0
2021-07-12T18:34:50,243   Found link https://files.pythonhosted.org/packages/33/a8/04af7dfe2f7b50ecc16ac834a2a4dff0a5bed383512c716a60fa4f254bd8/velocyto-0.13.1.tar.gz#sha256=fcf3073e29395e29e9abcebb95f365fcbef96f7b1c284833c96a0f0e8921a79b (from https://pypi.org/simple/velocyto/), version: 0.13.1
2021-07-12T18:34:50,244   Found link https://files.pythonhosted.org/packages/48/c7/af6fa13014962f41f42c4626f8f23afa2c65e9b22896bd1372103d55aeb5/velocyto-0.13.2.tar.gz#sha256=7e4371a8a7165ab432067426ebb3a5cc0212b6c5f1c543978455e1ea33442c0b (from https://pypi.org/simple/velocyto/), version: 0.13.2
2021-07-12T18:34:50,244   Found link https://files.pythonhosted.org/packages/a2/e4/8ad288912a2318b03c184d3bd2d4903f8628061f665812e399a43427fa55/velocyto-0.13.3.tar.gz#sha256=bcaff1acd9b71875f50b23c3e3235ae8829785b387e36ef0c94c4f18817122f5 (from https://pypi.org/simple/velocyto/), version: 0.13.3
2021-07-12T18:34:50,244   Found link https://files.pythonhosted.org/packages/bc/fe/befa961b46c4d42dda95d1157432672da4ebbe5e4679fa397112a2bd8284/velocyto-0.13.4.tar.gz#sha256=9278dd871123a136709afa5987dfac1ee03de4e30d9a328f21952e3937efdd6d (from https://pypi.org/simple/velocyto/), version: 0.13.4
2021-07-12T18:34:50,244   Found link https://files.pythonhosted.org/packages/bd/f1/ebaed28447aa481ad1636f257f1e75acd9351df2f69d5e004d032b3ecaaa/velocyto-0.13.7.tar.gz#sha256=adda13638875d423ba09379b2af856e9daa23f748041ed7cfc5feafc4a34ab64 (from https://pypi.org/simple/velocyto/), version: 0.13.7
2021-07-12T18:34:50,245   Found link https://files.pythonhosted.org/packages/2f/5b/eeb1db8afadd6de5471c78eab59f5dc369578c3409000182d67827c60d68/velocyto-0.13.8.tar.gz#sha256=1534f57927b6786d89cb56847ccd43f096031b0f59e2d37a579616a8d4680a72 (from https://pypi.org/simple/velocyto/), version: 0.13.8
2021-07-12T18:34:50,245   Found link https://files.pythonhosted.org/packages/d8/d1/3c7c8cf54202aaf3033c0eea674bd0f5131c2514ff24cb7ce8967490f064/velocyto-0.17.1.tar.gz#sha256=4b0db86149a8494543380c8af81501a3e2adbe74098c56e08f08031b9886729c (from https://pypi.org/simple/velocyto/), version: 0.17.1
2021-07-12T18:34:50,245   Found link https://files.pythonhosted.org/packages/dc/32/fb62b9be15d1ec817187b17d05f342c7b31a8584b96b0baada4612eb9438/velocyto-0.17.2.tar.gz#sha256=7946d823adec6cb262f45699b4cc004868e68524b92b28767ea2dc567dad5494 (from https://pypi.org/simple/velocyto/), version: 0.17.2
2021-07-12T18:34:50,246   Found link https://files.pythonhosted.org/packages/94/7c/185772086578eff42f9faa02b6450b6a5773ed95f50e15d525b2f5a3a24e/velocyto-0.17.3.tar.gz#sha256=c3874f1a5b548df51b47dcb19391721918cf4e92405d6d1ca627fe025d9c787d (from https://pypi.org/simple/velocyto/), version: 0.17.3
2021-07-12T18:34:50,246   Found link https://files.pythonhosted.org/packages/41/6d/7d8001a14e909bf6c6fc078f107d4e967bb077da96b575284a24769e0c05/velocyto-0.17.4.tar.gz#sha256=67f7bef9326dc03f4e0f9dc8dfa8d8633b78fe08ad6b135b8d84e6a22e110d77 (from https://pypi.org/simple/velocyto/), version: 0.17.4
2021-07-12T18:34:50,246   Found link https://files.pythonhosted.org/packages/2c/2f/7861671f0dd2267c11ed68a0db175c6a57f4ea80c1f813e271e2a5552ddb/velocyto-0.17.6.tar.gz#sha256=4501679896f26abb0fc691c98b808fb78f3b5dc6c60cc8d4e38fd44d3e652c10 (from https://pypi.org/simple/velocyto/), version: 0.17.6
2021-07-12T18:34:50,246   Found link https://files.pythonhosted.org/packages/f4/11/b897134cb2d1219216a463bdeef6a2a030b0cc5602b0037e259ba8c00eec/velocyto-0.17.7.tar.gz#sha256=d9bcd4cb2d812fcf54494331344f7923baa93fd700ef331ecc53999bb7d9fdcd (from https://pypi.org/simple/velocyto/), version: 0.17.7
2021-07-12T18:34:50,247   Found link https://files.pythonhosted.org/packages/f2/0d/bb9c89d4f8237c4f362e3abf24c06161b67712604aeaecf766da2f2f6556/velocyto-0.17.8.tar.gz#sha256=36d3e80b2388c2aa4138114302aa5b098aa0371f43186521def5d059a0e6111a (from https://pypi.org/simple/velocyto/), version: 0.17.8
2021-07-12T18:34:50,247   Found link https://files.pythonhosted.org/packages/ce/42/e7124f62b3dbcbad103cd6e6a43a0cc2411ce3cd34c8cffc5e43cf149eb2/velocyto-0.17.10.tar.gz#sha256=20c2452926314373a50f3d7e352244cbfecf715420dfbce2271f668b45fd05d0 (from https://pypi.org/simple/velocyto/), version: 0.17.10
2021-07-12T18:34:50,247   Found link https://files.pythonhosted.org/packages/90/c8/52721181ce8a51b052dfb0136829fd28cb21206f56f993540c62f58b53f1/velocyto-0.17.11.tar.gz#sha256=3b9d70b2ac65c0591add5a4d07cfbd3a5308962764f5ec9bded23cf41fd2b22e (from https://pypi.org/simple/velocyto/), version: 0.17.11
2021-07-12T18:34:50,247   Found link https://files.pythonhosted.org/packages/cd/8c/282e5be0a586159b889c570c1c025dec4a7dd3767c9d0fabdedaafa6b783/velocyto-0.17.13.tar.gz#sha256=ee7e24e3795124a1722a2c2c311e9dc05119ed98d7cbcae34cc9bef50b465c9c (from https://pypi.org/simple/velocyto/), version: 0.17.13
2021-07-12T18:34:50,248   Found link https://files.pythonhosted.org/packages/f5/d6/8b7dc2584a1a9967e0667cdf3a939835dcb2212a6ffe4c42f49cc6390bd6/velocyto-0.17.14.tar.gz#sha256=3df416e9e6c1f74b7f8f0d17e77df916bbad01de298658a1119d226d7c9ec22b (from https://pypi.org/simple/velocyto/), version: 0.17.14
2021-07-12T18:34:50,248   Found link https://files.pythonhosted.org/packages/a9/2a/3667d47e3eba5faf4138cda4336967a79190c184e55759141f1f88ab072b/velocyto-0.17.15.tar.gz#sha256=8f3876311c8a290d9d81e78bccd3c040b4eb2017df994f75d9e885ef0b52caab (from https://pypi.org/simple/velocyto/), version: 0.17.15
2021-07-12T18:34:50,248   Found link https://files.pythonhosted.org/packages/20/93/a3225b29f9631c14c1c5b82e5efc115c72af9307aaea5547cd92d39cae9d/velocyto-0.17.16.tar.gz#sha256=134457c4f08e58f70fed37c066ac90a67e704556b71960ad369c306bdf208550 (from https://pypi.org/simple/velocyto/), version: 0.17.16
2021-07-12T18:34:50,249   Found link https://files.pythonhosted.org/packages/81/66/e8fff9d3b824fd99c0f678c47c740fec058ce2d9a0cfdf11b114ea8889f2/velocyto-0.17.17.tar.gz#sha256=1ad65fc53292ce1970a70bc742d73491b370038e0b0065761303e787bf7ffe39 (from https://pypi.org/simple/velocyto/), version: 0.17.17
2021-07-12T18:34:50,249 Skipping link: not a file: https://pypi.org/simple/velocyto/
2021-07-12T18:34:50,272 Given no hashes to check 1 links for project 'velocyto': discarding no candidates
2021-07-12T18:34:50,291 Collecting velocyto==0.9.13
2021-07-12T18:34:50,292   Created temporary directory: /tmp/pip-unpack-h8v6sgo5
2021-07-12T18:34:50,495   Downloading velocyto-0.9.13.tar.gz (197 kB)
2021-07-12T18:34:50,716   Added velocyto==0.9.13 from https://files.pythonhosted.org/packages/cc/83/34185de1ffbdb47be427a6911549c7ee84ee7e965174cfab57ae14a89089/velocyto-0.9.13.tar.gz#sha256=87443c88605c9a915458395fc3f2a9a2563786d42d96067fb7aabe15ee665ff8 to build tracker '/tmp/pip-req-tracker-mbqoaipx'
2021-07-12T18:34:50,716     Running setup.py (path:/tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a/setup.py) egg_info for package velocyto
2021-07-12T18:34:50,717     Created temporary directory: /tmp/pip-pip-egg-info-37rmfhxw
2021-07-12T18:34:50,717     Running command python setup.py egg_info
2021-07-12T18:34:53,092     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a/velocyto/speedboosted.pyx
2021-07-12T18:34:53,093       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T18:35:01,284     ['/tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a/setup.py', 'egg_info', '--egg-base', '/tmp/pip-pip-egg-info-37rmfhxw']
2021-07-12T18:35:01,284     Compiling velocyto/speedboosted.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T18:35:01,284     [1/1] Cythonizing velocyto/speedboosted.pyx
2021-07-12T18:35:01,498     running egg_info
2021-07-12T18:35:01,500     creating /tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info
2021-07-12T18:35:01,502     writing /tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/PKG-INFO
2021-07-12T18:35:01,504     writing dependency_links to /tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/dependency_links.txt
2021-07-12T18:35:01,505     writing entry points to /tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/entry_points.txt
2021-07-12T18:35:01,507     writing requirements to /tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/requires.txt
2021-07-12T18:35:01,508     writing top-level names to /tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/top_level.txt
2021-07-12T18:35:01,510     writing manifest file '/tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/SOURCES.txt'
2021-07-12T18:35:01,670     reading manifest file '/tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/SOURCES.txt'
2021-07-12T18:35:01,672     reading manifest template 'MANIFEST.in'
2021-07-12T18:35:01,676     writing manifest file '/tmp/pip-pip-egg-info-37rmfhxw/velocyto.egg-info/SOURCES.txt'
2021-07-12T18:35:02,031   Source in /tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a has version 0.9.13, which satisfies requirement velocyto==0.9.13 from https://files.pythonhosted.org/packages/cc/83/34185de1ffbdb47be427a6911549c7ee84ee7e965174cfab57ae14a89089/velocyto-0.9.13.tar.gz#sha256=87443c88605c9a915458395fc3f2a9a2563786d42d96067fb7aabe15ee665ff8
2021-07-12T18:35:02,032   Removed velocyto==0.9.13 from https://files.pythonhosted.org/packages/cc/83/34185de1ffbdb47be427a6911549c7ee84ee7e965174cfab57ae14a89089/velocyto-0.9.13.tar.gz#sha256=87443c88605c9a915458395fc3f2a9a2563786d42d96067fb7aabe15ee665ff8 from build tracker '/tmp/pip-req-tracker-mbqoaipx'
2021-07-12T18:35:02,036 Created temporary directory: /tmp/pip-unpack-jtnpnilf
2021-07-12T18:35:02,037 Building wheels for collected packages: velocyto
2021-07-12T18:35:02,041   Created temporary directory: /tmp/pip-wheel-12u1asp7
2021-07-12T18:35:02,041   Building wheel for velocyto (setup.py): started
2021-07-12T18:35:02,041   Destination directory: /tmp/pip-wheel-12u1asp7
2021-07-12T18:35:02,041   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-12u1asp7
2021-07-12T18:35:03,233   ['/tmp/pip-wheel-rzi8jbsb/velocyto_7fad2e7b4d9c4d3e818a570668ebd51a/setup.py', 'bdist_wheel', '-d', '/tmp/pip-wheel-12u1asp7']
2021-07-12T18:35:04,184   running bdist_wheel
2021-07-12T18:35:04,190   running build
2021-07-12T18:35:04,190   running build_py
2021-07-12T18:35:04,325   creating build
2021-07-12T18:35:04,325   creating build/lib.linux-armv7l-3.9
2021-07-12T18:35:04,326   creating build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,327   copying velocyto/__init__.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,329   copying velocyto/estimation.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,331   copying velocyto/_version.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,333   copying velocyto/diffusion.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,335   copying velocyto/read.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,337   copying velocyto/gfflight.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,338   copying velocyto/neighbors.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,341   copying velocyto/metadata.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,342   copying velocyto/intervals.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,345   copying velocyto/genes.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,348   copying velocyto/analysis.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,353   copying velocyto/transcript.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,355   copying velocyto/counter.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,358   copying velocyto/molitem.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,360   copying velocyto/constants.py -> build/lib.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,364   creating build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,365   copying velocyto/commands/__init__.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,367   copying velocyto/commands/velocyto.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,370   copying velocyto/commands/run.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,374   copying velocyto/commands/_run.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,378   copying velocyto/commands/extract_repeats.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,382   copying velocyto/commands/multi10x.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,385   copying velocyto/commands/run10x.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,389   copying velocyto/commands/extract_intervals.py -> build/lib.linux-armv7l-3.9/velocyto/commands
2021-07-12T18:35:04,396   running build_ext
2021-07-12T18:35:04,405   building 'velocyto.speedboosted' extension
2021-07-12T18:35:04,406   creating build/temp.linux-armv7l-3.9
2021-07-12T18:35:04,407   creating build/temp.linux-armv7l-3.9/velocyto
2021-07-12T18:35:04,620   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c velocyto/speedboosted.c -o build/temp.linux-armv7l-3.9/velocyto/speedboosted.o -fopenmp
2021-07-12T18:35:05,053   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T18:35:05,054                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T18:35:05,054                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T18:35:05,054                    from velocyto/speedboosted.c:631:
2021-07-12T18:35:05,054   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T18:35:05,054      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T18:35:05,055         |  ^~~~~~~
2021-07-12T18:35:05,531   velocyto/speedboosted.c: In function ‘__Pyx_InitGlobals’:
2021-07-12T18:35:05,544   velocyto/speedboosted.c:25357:1: warning: ‘PyEval_InitThreads’ is deprecated [-Wdeprecated-declarations]
2021-07-12T18:35:05,544   25357 | PyEval_InitThreads();
2021-07-12T18:35:05,544         | ^~~~~~~~~~~~~~~~~~
2021-07-12T18:35:05,544   In file included from /usr/include/python3.9/Python.h:145,
2021-07-12T18:35:05,545                    from velocyto/speedboosted.c:25:
2021-07-12T18:35:05,545   /usr/include/python3.9/ceval.h:130:37: note: declared here
2021-07-12T18:35:05,545     130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void);
2021-07-12T18:35:05,545         |                                     ^~~~~~~~~~~~~~~~~~
2021-07-12T18:35:27,538   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/velocyto/speedboosted.o -o build/lib.linux-armv7l-3.9/velocyto/speedboosted.cpython-39-arm-linux-gnueabihf.so -fopenmp
2021-07-12T18:35:27,751   installing to build/bdist.linux-armv7l/wheel
2021-07-12T18:35:27,751   running install
2021-07-12T18:35:27,754   running install_lib
2021-07-12T18:35:27,758   creating build/bdist.linux-armv7l
2021-07-12T18:35:27,758   creating build/bdist.linux-armv7l/wheel
2021-07-12T18:35:27,760   creating build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,761   copying build/lib.linux-armv7l-3.9/velocyto/__init__.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,764   creating build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,765   copying build/lib.linux-armv7l-3.9/velocyto/commands/__init__.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,766   copying build/lib.linux-armv7l-3.9/velocyto/commands/velocyto.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,768   copying build/lib.linux-armv7l-3.9/velocyto/commands/run.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,770   copying build/lib.linux-armv7l-3.9/velocyto/commands/_run.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,772   copying build/lib.linux-armv7l-3.9/velocyto/commands/extract_repeats.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,774   copying build/lib.linux-armv7l-3.9/velocyto/commands/multi10x.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,776   copying build/lib.linux-armv7l-3.9/velocyto/commands/run10x.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,778   copying build/lib.linux-armv7l-3.9/velocyto/commands/extract_intervals.py -> build/bdist.linux-armv7l/wheel/velocyto/commands
2021-07-12T18:35:27,781   copying build/lib.linux-armv7l-3.9/velocyto/estimation.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,783   copying build/lib.linux-armv7l-3.9/velocyto/_version.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,785   copying build/lib.linux-armv7l-3.9/velocyto/diffusion.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,788   copying build/lib.linux-armv7l-3.9/velocyto/read.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,790   copying build/lib.linux-armv7l-3.9/velocyto/gfflight.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,792   copying build/lib.linux-armv7l-3.9/velocyto/neighbors.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,794   copying build/lib.linux-armv7l-3.9/velocyto/metadata.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,796   copying build/lib.linux-armv7l-3.9/velocyto/intervals.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,799   copying build/lib.linux-armv7l-3.9/velocyto/genes.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,801   copying build/lib.linux-armv7l-3.9/velocyto/analysis.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,806   copying build/lib.linux-armv7l-3.9/velocyto/speedboosted.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,836   copying build/lib.linux-armv7l-3.9/velocyto/transcript.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,839   copying build/lib.linux-armv7l-3.9/velocyto/counter.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,842   copying build/lib.linux-armv7l-3.9/velocyto/molitem.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,844   copying build/lib.linux-armv7l-3.9/velocyto/constants.py -> build/bdist.linux-armv7l/wheel/velocyto
2021-07-12T18:35:27,846   running install_egg_info
2021-07-12T18:35:27,869   running egg_info
2021-07-12T18:35:27,869   writing velocyto.egg-info/PKG-INFO
2021-07-12T18:35:27,871   writing dependency_links to velocyto.egg-info/dependency_links.txt
2021-07-12T18:35:27,873   writing entry points to velocyto.egg-info/entry_points.txt
2021-07-12T18:35:27,874   writing requirements to velocyto.egg-info/requires.txt
2021-07-12T18:35:27,875   writing top-level names to velocyto.egg-info/top_level.txt
2021-07-12T18:35:27,885   reading manifest file 'velocyto.egg-info/SOURCES.txt'
2021-07-12T18:35:27,888   reading manifest template 'MANIFEST.in'
2021-07-12T18:35:27,893   writing manifest file 'velocyto.egg-info/SOURCES.txt'
2021-07-12T18:35:27,894   Copying velocyto.egg-info to build/bdist.linux-armv7l/wheel/velocyto-0.9.13-py3.9.egg-info
2021-07-12T18:35:27,907   running install_scripts
2021-07-12T18:35:27,959   creating build/bdist.linux-armv7l/wheel/velocyto-0.9.13.dist-info/WHEEL
2021-07-12T18:35:27,962   creating '/tmp/pip-wheel-12u1asp7/velocyto-0.9.13-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T18:35:27,965   adding 'velocyto/__init__.py'
2021-07-12T18:35:27,966   adding 'velocyto/_version.py'
2021-07-12T18:35:27,978   adding 'velocyto/analysis.py'
2021-07-12T18:35:27,982   adding 'velocyto/constants.py'
2021-07-12T18:35:27,984   adding 'velocyto/counter.py'
2021-07-12T18:35:27,986   adding 'velocyto/diffusion.py'
2021-07-12T18:35:27,988   adding 'velocyto/estimation.py'
2021-07-12T18:35:27,990   adding 'velocyto/genes.py'
2021-07-12T18:35:27,992   adding 'velocyto/gfflight.py'
2021-07-12T18:35:27,993   adding 'velocyto/intervals.py'
2021-07-12T18:35:27,994   adding 'velocyto/metadata.py'
2021-07-12T18:35:27,995   adding 'velocyto/molitem.py'
2021-07-12T18:35:27,998   adding 'velocyto/neighbors.py'
2021-07-12T18:35:27,999   adding 'velocyto/read.py'
2021-07-12T18:35:28,262   adding 'velocyto/speedboosted.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T18:35:28,274   adding 'velocyto/transcript.py'
2021-07-12T18:35:28,275   adding 'velocyto/commands/__init__.py'
2021-07-12T18:35:28,277   adding 'velocyto/commands/_run.py'
2021-07-12T18:35:28,279   adding 'velocyto/commands/extract_intervals.py'
2021-07-12T18:35:28,281   adding 'velocyto/commands/extract_repeats.py'
2021-07-12T18:35:28,282   adding 'velocyto/commands/multi10x.py'
2021-07-12T18:35:28,283   adding 'velocyto/commands/run.py'
2021-07-12T18:35:28,285   adding 'velocyto/commands/run10x.py'
2021-07-12T18:35:28,286   adding 'velocyto/commands/velocyto.py'
2021-07-12T18:35:28,288   adding 'velocyto-0.9.13.dist-info/METADATA'
2021-07-12T18:35:28,289   adding 'velocyto-0.9.13.dist-info/WHEEL'
2021-07-12T18:35:28,290   adding 'velocyto-0.9.13.dist-info/entry_points.txt'
2021-07-12T18:35:28,291   adding 'velocyto-0.9.13.dist-info/top_level.txt'
2021-07-12T18:35:28,291   adding 'velocyto-0.9.13.dist-info/RECORD'
2021-07-12T18:35:28,302   removing build/bdist.linux-armv7l/wheel
2021-07-12T18:35:28,460   Building wheel for velocyto (setup.py): finished with status 'done'
2021-07-12T18:35:28,469   Created wheel for velocyto: filename=velocyto-0.9.13-cp39-cp39-linux_armv7l.whl size=527810 sha256=b6d6d9ce30f999003e42db88543549d025ac0ac25df2f62c82bac1f265a53d41
2021-07-12T18:35:28,469   Stored in directory: /tmp/pip-ephem-wheel-cache-dp36rexs/wheels/8f/e6/5e/5c5a0337c44fd4dbdc4c572c64e7db707fa06e317ad3bef063
2021-07-12T18:35:28,479 Successfully built velocyto
2021-07-12T18:35:28,505 Removed build tracker: '/tmp/pip-req-tracker-mbqoaipx'