2021-07-12T19:42:52,768 Created temporary directory: /tmp/pip-ephem-wheel-cache-rernhwpm 2021-07-12T19:42:52,771 Created temporary directory: /tmp/pip-req-tracker-gfqu4506 2021-07-12T19:42:52,772 Initialized build tracking at /tmp/pip-req-tracker-gfqu4506 2021-07-12T19:42:52,772 Created build tracker: /tmp/pip-req-tracker-gfqu4506 2021-07-12T19:42:52,772 Entered build tracker: /tmp/pip-req-tracker-gfqu4506 2021-07-12T19:42:52,773 Created temporary directory: /tmp/pip-wheel-v1ldku78 2021-07-12T19:42:52,801 1 location(s) to search for versions of molmod: 2021-07-12T19:42:52,801 * https://pypi.org/simple/molmod/ 2021-07-12T19:42:52,801 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-12T19:42:52,802 Getting page https://pypi.org/simple/molmod/ 2021-07-12T19:42:52,803 Found index url https://pypi.org/simple 2021-07-12T19:42:52,897 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-12T19:42:52,898 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-12T19:42:52,898 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-12T19:42:52,898 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-12T19:42:52,899 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-12T19:42:52,899 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-12T19:42:52,899 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-12T19:42:52,900 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-12T19:42:52,900 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-12T19:42:52,900 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-12T19:42:52,900 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-12T19:42:52,901 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-12T19:42:52,901 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-12T19:42:52,901 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-12T19:42:52,901 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-12T19:42:52,902 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-12T19:42:52,902 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-12T19:42:52,922 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-12T19:42:52,941 Collecting molmod==1.4.4 2021-07-12T19:42:52,943 Created temporary directory: /tmp/pip-unpack-s53ya6ad 2021-07-12T19:42:53,398 Downloading molmod-1.4.4.tar.gz (1.7 MB) 2021-07-12T19:42:54,319 Added molmod==1.4.4 from https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 to build tracker '/tmp/pip-req-tracker-gfqu4506' 2021-07-12T19:42:54,320 Running setup.py (path:/tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/setup.py) egg_info for package molmod 2021-07-12T19:42:54,321 Created temporary directory: /tmp/pip-pip-egg-info-y6_36bpe 2021-07-12T19:42:54,321 Running command python setup.py egg_info 2021-07-12T19:42:55,666 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T19:42:55,849 Trying to get the version from git describe 2021-07-12T19:42:55,849 Trying to get the version from {} /tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/molmod/version.py 2021-07-12T19:42:55,849 Version according to /tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/molmod/version.py: 1.4.4 2021-07-12T19:42:55,849 running egg_info 2021-07-12T19:42:55,852 creating /tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info 2021-07-12T19:42:55,853 writing /tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/PKG-INFO 2021-07-12T19:42:55,855 writing dependency_links to /tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/dependency_links.txt 2021-07-12T19:42:55,857 writing requirements to /tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/requires.txt 2021-07-12T19:42:55,858 writing top-level names to /tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/top_level.txt 2021-07-12T19:42:55,860 writing manifest file '/tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/SOURCES.txt' 2021-07-12T19:42:56,013 reading manifest file '/tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/SOURCES.txt' 2021-07-12T19:42:56,014 reading manifest template 'MANIFEST.in' 2021-07-12T19:42:56,352 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T19:42:56,407 adding license file 'LICENSE.txt' 2021-07-12T19:42:56,418 writing manifest file '/tmp/pip-pip-egg-info-y6_36bpe/molmod.egg-info/SOURCES.txt' 2021-07-12T19:42:56,536 Source in /tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218 has version 1.4.4, which satisfies requirement molmod==1.4.4 from https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 2021-07-12T19:42:56,537 Removed molmod==1.4.4 from https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 from build tracker '/tmp/pip-req-tracker-gfqu4506' 2021-07-12T19:42:56,541 Created temporary directory: /tmp/pip-unpack-ktwzj340 2021-07-12T19:42:56,542 Building wheels for collected packages: molmod 2021-07-12T19:42:56,547 Created temporary directory: /tmp/pip-wheel-1terg9jm 2021-07-12T19:42:56,547 Building wheel for molmod (setup.py): started 2021-07-12T19:42:56,547 Destination directory: /tmp/pip-wheel-1terg9jm 2021-07-12T19:42:56,548 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1terg9jm 2021-07-12T19:42:57,867 Trying to get the version from git describe 2021-07-12T19:42:57,878 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T19:42:57,879 Trying to get the version from {} /tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/molmod/version.py 2021-07-12T19:42:57,879 Version according to /tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/molmod/version.py: 1.4.4 2021-07-12T19:42:58,078 running bdist_wheel 2021-07-12T19:42:58,083 running build 2021-07-12T19:42:58,083 running build_py 2021-07-12T19:42:58,219 creating build 2021-07-12T19:42:58,219 creating build/lib.linux-armv7l-3.9 2021-07-12T19:42:58,220 creating build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,221 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,224 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,225 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,227 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,229 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,232 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,234 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,236 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,238 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,241 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,243 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,245 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,248 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,251 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,256 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,258 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,261 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,264 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,266 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,268 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,270 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,273 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,275 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,278 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,280 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,283 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,287 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,288 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,290 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,292 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,295 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,297 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,301 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,303 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,305 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,307 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,310 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,311 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,314 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,316 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,319 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,321 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,324 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,326 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,327 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,329 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,332 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,334 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,336 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,337 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,339 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T19:42:58,343 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,344 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,346 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,349 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,351 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,353 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,355 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,357 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,360 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,362 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,364 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,366 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,368 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,370 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,372 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,374 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,377 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,379 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,382 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,384 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T19:42:58,387 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,388 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,390 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,392 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,394 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,396 copying molmod/io/test/test_chk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,398 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,400 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,401 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,403 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,405 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,407 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,409 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,411 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,413 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,414 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,417 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,418 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,420 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T19:42:58,422 running egg_info 2021-07-12T19:42:58,436 writing molmod.egg-info/PKG-INFO 2021-07-12T19:42:58,438 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-12T19:42:58,440 writing requirements to molmod.egg-info/requires.txt 2021-07-12T19:42:58,441 writing top-level names to molmod.egg-info/top_level.txt 2021-07-12T19:42:58,454 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T19:42:58,461 reading manifest template 'MANIFEST.in' 2021-07-12T19:42:58,795 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T19:42:58,851 adding license file 'LICENSE.txt' 2021-07-12T19:42:58,865 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T19:42:58,881 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,883 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,885 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,888 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,890 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,892 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,894 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,896 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,898 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,900 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,902 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,904 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,906 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,908 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,910 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,913 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,915 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,918 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T19:42:58,921 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,922 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,924 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,927 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,940 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,955 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,958 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,961 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T19:42:58,965 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:58,965 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:58,969 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:58,987 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:58,990 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:58,992 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:58,994 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,028 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,030 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,033 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,035 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,038 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,041 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,043 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,046 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,048 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,051 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,054 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,057 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,061 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,063 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,077 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,080 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,082 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,085 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,100 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,103 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,105 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,108 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,111 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,115 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,118 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,121 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,124 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,127 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,130 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,133 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,136 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,139 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,145 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,149 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,152 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,154 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,157 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,159 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,162 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,165 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,167 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,170 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,174 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,177 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,180 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,182 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,185 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,192 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,196 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,199 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,201 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,203 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,205 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,207 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,210 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T19:42:59,212 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-12T19:42:59,212 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T19:42:59,213 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T19:42:59,216 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T19:42:59,218 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T19:42:59,220 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,221 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,223 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,226 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,228 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,230 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,233 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T19:42:59,236 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,237 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,239 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,241 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,244 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,246 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,249 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T19:42:59,251 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,252 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,254 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,257 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,259 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,262 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,266 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,269 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T19:42:59,271 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T19:42:59,272 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T19:42:59,274 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T19:42:59,277 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T19:42:59,279 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T19:42:59,282 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T19:42:59,292 running build_ext 2021-07-12T19:42:59,297 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-12T19:42:59,926 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-v1ldku78/molmod_fe89785d9498463aad19b4a4882b2218/molmod/ext.pyx 2021-07-12T19:42:59,926 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T19:43:07,236 building 'molmod.ext' extension 2021-07-12T19:43:07,237 creating build/temp.linux-armv7l-3.9 2021-07-12T19:43:07,237 creating build/temp.linux-armv7l-3.9/molmod 2021-07-12T19:43:07,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-12T19:43:07,482 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-12T19:43:07,883 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T19:43:07,883 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T19:43:07,884 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T19:43:07,884 from molmod/ext.c:612: 2021-07-12T19:43:07,884 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T19:43:07,884 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T19:43:07,884 | ^~~~~~~ 2021-07-12T19:43:07,963 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-12T19:43:07,965 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:07,965 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T19:43:07,965 | ^~ 2021-07-12T19:43:07,967 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:07,967 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T19:43:07,967 | ^~ 2021-07-12T19:43:07,970 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:07,970 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T19:43:07,970 | ^~ 2021-07-12T19:43:07,972 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:07,972 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T19:43:07,972 | ^~ 2021-07-12T19:43:08,017 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-12T19:43:08,019 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,019 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T19:43:08,019 | ^~ 2021-07-12T19:43:08,022 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,022 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T19:43:08,022 | ^~ 2021-07-12T19:43:08,024 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,024 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T19:43:08,024 | ^~ 2021-07-12T19:43:08,079 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-12T19:43:08,082 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,082 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T19:43:08,082 | ^~ 2021-07-12T19:43:08,141 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-12T19:43:08,145 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,145 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T19:43:08,145 | ^~ 2021-07-12T19:43:08,207 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-12T19:43:08,211 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,211 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-12T19:43:08,212 | ^~ 2021-07-12T19:43:08,286 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-12T19:43:08,290 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T19:43:08,291 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-12T19:43:08,291 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T19:43:08,291 In file included from molmod/ext.c:623: 2021-07-12T19:43:08,291 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-12T19:43:08,291 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-12T19:43:08,292 | ~~~~~~^~~~~~ 2021-07-12T19:43:08,293 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-12T19:43:08,297 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,297 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-12T19:43:08,298 | ^~ 2021-07-12T19:43:08,316 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T19:43:08,316 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-12T19:43:08,316 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T19:43:08,317 In file included from molmod/ext.c:623: 2021-07-12T19:43:08,317 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-12T19:43:08,317 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-12T19:43:08,317 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-12T19:43:08,324 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-12T19:43:08,328 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,329 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-12T19:43:08,329 | ^~ 2021-07-12T19:43:08,334 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T19:43:08,334 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-12T19:43:08,334 | ^~ 2021-07-12T19:43:24,719 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-12T19:43:25,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-12T19:43:25,187 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-12T19:43:25,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-12T19:43:25,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-12T19:43:25,925 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T19:43:26,127 installing to build/bdist.linux-armv7l/wheel 2021-07-12T19:43:26,127 running install 2021-07-12T19:43:26,128 running install_lib 2021-07-12T19:43:26,133 creating build/bdist.linux-armv7l 2021-07-12T19:43:26,133 creating build/bdist.linux-armv7l/wheel 2021-07-12T19:43:26,135 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,136 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,140 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,141 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,143 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,145 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,172 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,175 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,176 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,179 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,181 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,183 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,185 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,188 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,191 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,193 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,195 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,197 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,199 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,202 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,204 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,206 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,209 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,212 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,215 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,217 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,220 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T19:43:26,223 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,224 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,226 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,228 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,230 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,232 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_chk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,234 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,237 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,239 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,241 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,243 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,245 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,247 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,249 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,251 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,253 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,255 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,257 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,259 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T19:43:26,261 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,263 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,265 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,267 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,269 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,272 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,274 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,276 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,279 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,280 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,295 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,297 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,300 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,312 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,314 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,318 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T19:43:26,323 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,323 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,325 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,327 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,329 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,331 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,334 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,336 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,342 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,343 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,345 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,351 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,353 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,355 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,358 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,371 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,373 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,375 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,377 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,379 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,380 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,382 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,384 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,386 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,388 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,399 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,401 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,423 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,426 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,428 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,430 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,431 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,433 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,435 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,448 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,450 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,452 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,454 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,456 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,459 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,461 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,464 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,465 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,468 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,470 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,472 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,474 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,475 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,478 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,480 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,482 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,484 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,486 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,488 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,493 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,495 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,498 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,501 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,504 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,506 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,508 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,510 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T19:43:26,514 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,516 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,519 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,521 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,523 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,525 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,527 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,532 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,536 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,538 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,543 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,546 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,548 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,551 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,554 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,556 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,558 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,561 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,563 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,566 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,568 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,571 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,573 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,576 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,578 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,580 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,582 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,585 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,588 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-12T19:43:26,590 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,591 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,594 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,599 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,601 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,604 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,607 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,609 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T19:43:26,613 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T19:43:26,614 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T19:43:26,616 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T19:43:26,618 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T19:43:26,621 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,622 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,625 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,627 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,629 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,631 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,633 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T19:43:26,636 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T19:43:26,636 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T19:43:26,639 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T19:43:26,641 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T19:43:26,643 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T19:43:26,645 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T19:43:26,647 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,648 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,651 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,654 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,656 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,659 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,662 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T19:43:26,665 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,669 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,670 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,672 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,675 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,678 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,681 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,684 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,687 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,690 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,692 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,695 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,697 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,700 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,703 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,706 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,710 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,713 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,715 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,717 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,720 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,723 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,725 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,727 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,729 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,731 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T19:43:26,734 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,738 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T19:43:26,741 running install_egg_info 2021-07-12T19:43:26,751 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.4.4-py3.9.egg-info 2021-07-12T19:43:26,768 running install_scripts 2021-07-12T19:43:26,825 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T19:43:26,831 creating build/bdist.linux-armv7l/wheel/molmod-1.4.4.dist-info/WHEEL 2021-07-12T19:43:26,834 creating '/tmp/pip-wheel-1terg9jm/molmod-1.4.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T19:43:26,838 adding 'molmod/__init__.py' 2021-07-12T19:43:26,840 adding 'molmod/binning.py' 2021-07-12T19:43:26,842 adding 'molmod/bonds.py' 2021-07-12T19:43:26,844 adding 'molmod/clusters.py' 2021-07-12T19:43:26,846 adding 'molmod/common.c' 2021-07-12T19:43:26,847 adding 'molmod/common.h' 2021-07-12T19:43:26,848 adding 'molmod/constants.py' 2021-07-12T19:43:27,075 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T19:43:27,085 adding 'molmod/ext.pyx' 2021-07-12T19:43:27,087 adding 'molmod/ff.c' 2021-07-12T19:43:27,088 adding 'molmod/ff.h' 2021-07-12T19:43:27,089 adding 'molmod/ff.pxd' 2021-07-12T19:43:27,090 adding 'molmod/graphs.c' 2021-07-12T19:43:27,092 adding 'molmod/graphs.h' 2021-07-12T19:43:27,093 adding 'molmod/graphs.pxd' 2021-07-12T19:43:27,102 adding 'molmod/graphs.py' 2021-07-12T19:43:27,106 adding 'molmod/ic.py' 2021-07-12T19:43:27,107 adding 'molmod/isotopes.py' 2021-07-12T19:43:27,110 adding 'molmod/log.py' 2021-07-12T19:43:27,118 adding 'molmod/minimizer.py' 2021-07-12T19:43:27,122 adding 'molmod/molecular_graphs.py' 2021-07-12T19:43:27,123 adding 'molmod/molecules.c' 2021-07-12T19:43:27,124 adding 'molmod/molecules.h' 2021-07-12T19:43:27,126 adding 'molmod/molecules.pxd' 2021-07-12T19:43:27,128 adding 'molmod/molecules.py' 2021-07-12T19:43:27,130 adding 'molmod/pairff.py' 2021-07-12T19:43:27,131 adding 'molmod/periodic.py' 2021-07-12T19:43:27,133 adding 'molmod/quaternions.py' 2021-07-12T19:43:27,135 adding 'molmod/randomize.py' 2021-07-12T19:43:27,136 adding 'molmod/similarity.c' 2021-07-12T19:43:27,138 adding 'molmod/similarity.h' 2021-07-12T19:43:27,139 adding 'molmod/similarity.pxd' 2021-07-12T19:43:27,140 adding 'molmod/similarity.py' 2021-07-12T19:43:27,142 adding 'molmod/symmetry.py' 2021-07-12T19:43:27,144 adding 'molmod/toyff.py' 2021-07-12T19:43:27,146 adding 'molmod/transformations.py' 2021-07-12T19:43:27,148 adding 'molmod/unit_cells.c' 2021-07-12T19:43:27,149 adding 'molmod/unit_cells.h' 2021-07-12T19:43:27,150 adding 'molmod/unit_cells.pxd' 2021-07-12T19:43:27,153 adding 'molmod/unit_cells.py' 2021-07-12T19:43:27,154 adding 'molmod/units.py' 2021-07-12T19:43:27,157 adding 'molmod/utils.py' 2021-07-12T19:43:27,158 adding 'molmod/vectors.py' 2021-07-12T19:43:27,159 adding 'molmod/version.py' 2021-07-12T19:43:27,161 adding 'molmod/zmatrix.py' 2021-07-12T19:43:27,163 adding 'molmod/data/bonds.csv' 2021-07-12T19:43:27,165 adding 'molmod/data/bonds.ods' 2021-07-12T19:43:27,249 adding 'molmod/data/mass.mas03' 2021-07-12T19:43:27,332 adding 'molmod/data/nubtab03.asc' 2021-07-12T19:43:27,338 adding 'molmod/data/periodic.csv' 2021-07-12T19:43:27,341 adding 'molmod/data/periodic.ods' 2021-07-12T19:43:27,356 adding 'molmod/data/toyff_angles.txt' 2021-07-12T19:43:27,363 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-12T19:43:27,495 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-12T19:43:27,500 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-12T19:43:27,502 adding 'molmod/data/test/5ringOH.xyz' 2021-07-12T19:43:27,503 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-12T19:43:27,747 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-12T19:43:27,755 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-12T19:43:27,757 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-12T19:43:27,758 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-12T19:43:27,759 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-12T19:43:27,761 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-12T19:43:27,762 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-12T19:43:27,763 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-12T19:43:27,765 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-12T19:43:27,766 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-12T19:43:27,767 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-12T19:43:27,769 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-12T19:43:27,772 adding 'molmod/data/test/alanine.cube' 2021-07-12T19:43:27,773 adding 'molmod/data/test/argon.xyz' 2021-07-12T19:43:27,850 adding 'molmod/data/test/bartek.atrj' 2021-07-12T19:43:27,854 adding 'molmod/data/test/benzene.xyz' 2021-07-12T19:43:27,855 adding 'molmod/data/test/butane.xyz' 2021-07-12T19:43:27,857 adding 'molmod/data/test/caplayer.cml' 2021-07-12T19:43:27,923 adding 'molmod/data/test/crystal_api.out' 2021-07-12T19:43:27,928 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-12T19:43:27,929 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-12T19:43:27,931 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-12T19:43:27,932 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-12T19:43:27,937 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-12T19:43:27,938 adding 'molmod/data/test/dopamine.xyz' 2021-07-12T19:43:27,940 adding 'molmod/data/test/ethane.xyz' 2021-07-12T19:43:27,941 adding 'molmod/data/test/ethene.xyz' 2021-07-12T19:43:27,942 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-12T19:43:27,943 adding 'molmod/data/test/example.sdf' 2021-07-12T19:43:27,945 adding 'molmod/data/test/formol.xyz' 2021-07-12T19:43:27,946 adding 'molmod/data/test/funny.xyz' 2021-07-12T19:43:27,947 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-12T19:43:27,977 adding 'molmod/data/test/il2.pdb' 2021-07-12T19:43:27,982 adding 'molmod/data/test/lammps_dump.txt' 2021-07-12T19:43:27,983 adding 'molmod/data/test/lau.xyz' 2021-07-12T19:43:27,984 adding 'molmod/data/test/octane.xyz' 2021-07-12T19:43:27,985 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-12T19:43:27,987 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-12T19:43:27,988 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-12T19:43:27,990 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-12T19:43:27,991 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-12T19:43:27,992 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-12T19:43:27,994 adding 'molmod/data/test/pentapeptide.psf' 2021-07-12T19:43:27,996 adding 'molmod/data/test/precursor.xyz' 2021-07-12T19:43:27,997 adding 'molmod/data/test/probes.xyz' 2021-07-12T19:43:27,998 adding 'molmod/data/test/tea.xyz' 2021-07-12T19:43:28,000 adding 'molmod/data/test/tetra.xyz' 2021-07-12T19:43:28,021 adding 'molmod/data/test/thf.psf' 2021-07-12T19:43:28,028 adding 'molmod/data/test/thf.xyz' 2021-07-12T19:43:28,030 adding 'molmod/data/test/thf_64.cell' 2021-07-12T19:43:28,031 adding 'molmod/data/test/thf_single.xyz' 2021-07-12T19:43:28,032 adding 'molmod/data/test/tpa.xyz' 2021-07-12T19:43:28,033 adding 'molmod/data/test/water.xyz' 2021-07-12T19:43:28,035 adding 'molmod/data/test/water2.gro' 2021-07-12T19:43:28,036 adding 'molmod/data/test/water_md.inp' 2021-07-12T19:43:28,037 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-12T19:43:28,039 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-12T19:43:28,040 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-12T19:43:28,041 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-12T19:43:28,043 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-12T19:43:28,044 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-12T19:43:28,045 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-12T19:43:28,046 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-12T19:43:28,048 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-12T19:43:28,049 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-12T19:43:28,051 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-12T19:43:28,052 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-12T19:43:28,054 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-12T19:43:28,055 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-12T19:43:28,056 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-12T19:43:28,057 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-12T19:43:28,059 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-12T19:43:28,061 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-12T19:43:28,062 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-12T19:43:28,064 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-12T19:43:28,074 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-12T19:43:28,075 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-12T19:43:28,076 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-12T19:43:28,078 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-12T19:43:28,079 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-12T19:43:28,080 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-12T19:43:28,082 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-12T19:43:28,083 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-12T19:43:28,085 adding 'molmod/io/__init__.py' 2021-07-12T19:43:28,087 adding 'molmod/io/atrj.py' 2021-07-12T19:43:28,088 adding 'molmod/io/chk.py' 2021-07-12T19:43:28,090 adding 'molmod/io/cml.py' 2021-07-12T19:43:28,091 adding 'molmod/io/common.py' 2021-07-12T19:43:28,093 adding 'molmod/io/cp2k.py' 2021-07-12T19:43:28,095 adding 'molmod/io/cpmd.py' 2021-07-12T19:43:28,096 adding 'molmod/io/crystal.py' 2021-07-12T19:43:28,098 adding 'molmod/io/cube.py' 2021-07-12T19:43:28,100 adding 'molmod/io/dlpoly.py' 2021-07-12T19:43:28,102 adding 'molmod/io/fchk.py' 2021-07-12T19:43:28,104 adding 'molmod/io/gamess.py' 2021-07-12T19:43:28,105 adding 'molmod/io/gromacs.py' 2021-07-12T19:43:28,107 adding 'molmod/io/lammps.py' 2021-07-12T19:43:28,109 adding 'molmod/io/number_state.py' 2021-07-12T19:43:28,110 adding 'molmod/io/pdb.py' 2021-07-12T19:43:28,112 adding 'molmod/io/psf.py' 2021-07-12T19:43:28,114 adding 'molmod/io/sdf.py' 2021-07-12T19:43:28,116 adding 'molmod/io/xyz.py' 2021-07-12T19:43:28,118 adding 'molmod/io/test/__init__.py' 2021-07-12T19:43:28,119 adding 'molmod/io/test/test_atrj.py' 2021-07-12T19:43:28,121 adding 'molmod/io/test/test_chk.py' 2021-07-12T19:43:28,122 adding 'molmod/io/test/test_cml.py' 2021-07-12T19:43:28,123 adding 'molmod/io/test/test_cp2k.py' 2021-07-12T19:43:28,125 adding 'molmod/io/test/test_cpmd.py' 2021-07-12T19:43:28,126 adding 'molmod/io/test/test_crystal.py' 2021-07-12T19:43:28,127 adding 'molmod/io/test/test_cube.py' 2021-07-12T19:43:28,129 adding 'molmod/io/test/test_dlpoly.py' 2021-07-12T19:43:28,130 adding 'molmod/io/test/test_fchk.py' 2021-07-12T19:43:28,131 adding 'molmod/io/test/test_gamess.py' 2021-07-12T19:43:28,132 adding 'molmod/io/test/test_gromacs.py' 2021-07-12T19:43:28,134 adding 'molmod/io/test/test_lammps.py' 2021-07-12T19:43:28,135 adding 'molmod/io/test/test_number_state.py' 2021-07-12T19:43:28,136 adding 'molmod/io/test/test_pdb.py' 2021-07-12T19:43:28,138 adding 'molmod/io/test/test_psf.py' 2021-07-12T19:43:28,139 adding 'molmod/io/test/test_sdf.py' 2021-07-12T19:43:28,140 adding 'molmod/io/test/test_xyz.py' 2021-07-12T19:43:28,143 adding 'molmod/test/__init__.py' 2021-07-12T19:43:28,144 adding 'molmod/test/common.py' 2021-07-12T19:43:28,146 adding 'molmod/test/test_binning.py' 2021-07-12T19:43:28,147 adding 'molmod/test/test_clusters.py' 2021-07-12T19:43:28,148 adding 'molmod/test/test_data.py' 2021-07-12T19:43:28,150 adding 'molmod/test/test_examples.py' 2021-07-12T19:43:28,153 adding 'molmod/test/test_graphs.py' 2021-07-12T19:43:28,154 adding 'molmod/test/test_ic.py' 2021-07-12T19:43:28,156 adding 'molmod/test/test_log.py' 2021-07-12T19:43:28,158 adding 'molmod/test/test_minimizer.py' 2021-07-12T19:43:28,161 adding 'molmod/test/test_molecular_graphs.py' 2021-07-12T19:43:28,162 adding 'molmod/test/test_molecules.py' 2021-07-12T19:43:28,165 adding 'molmod/test/test_pairff.py' 2021-07-12T19:43:28,166 adding 'molmod/test/test_quaternions.py' 2021-07-12T19:43:28,167 adding 'molmod/test/test_randomize.py' 2021-07-12T19:43:28,169 adding 'molmod/test/test_similarity.py' 2021-07-12T19:43:28,170 adding 'molmod/test/test_symmetry.py' 2021-07-12T19:43:28,172 adding 'molmod/test/test_toyff.py' 2021-07-12T19:43:28,174 adding 'molmod/test/test_transformations.py' 2021-07-12T19:43:28,176 adding 'molmod/test/test_unit_cells.py' 2021-07-12T19:43:28,178 adding 'molmod/test/test_units.py' 2021-07-12T19:43:28,179 adding 'molmod/test/test_utils.py' 2021-07-12T19:43:28,180 adding 'molmod/test/test_vectors.py' 2021-07-12T19:43:28,182 adding 'molmod/test/test_zmatrix.py' 2021-07-12T19:43:28,189 adding 'molmod-1.4.4.dist-info/LICENSE.txt' 2021-07-12T19:43:28,190 adding 'molmod-1.4.4.dist-info/METADATA' 2021-07-12T19:43:28,191 adding 'molmod-1.4.4.dist-info/WHEEL' 2021-07-12T19:43:28,192 adding 'molmod-1.4.4.dist-info/top_level.txt' 2021-07-12T19:43:28,195 adding 'molmod-1.4.4.dist-info/RECORD' 2021-07-12T19:43:28,230 removing build/bdist.linux-armv7l/wheel 2021-07-12T19:43:28,659 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-12T19:43:28,686 Created wheel for molmod: filename=molmod-1.4.4-cp39-cp39-linux_armv7l.whl size=1955237 sha256=bd4b288baaa4928f4f237d0b50f638669e5104cd5646298600e6b626d420c0d0 2021-07-12T19:43:28,686 Stored in directory: /tmp/pip-ephem-wheel-cache-rernhwpm/wheels/75/5d/69/3324cf14b2788e7673f75642e49b8cdf410f333968464a49e7 2021-07-12T19:43:28,704 Successfully built molmod 2021-07-12T19:43:28,769 Removed build tracker: '/tmp/pip-req-tracker-gfqu4506'