2021-07-12T20:11:54,661 Created temporary directory: /tmp/pip-ephem-wheel-cache-n68oxyuz
2021-07-12T20:11:54,664 Created temporary directory: /tmp/pip-req-tracker-27f5dzfl
2021-07-12T20:11:54,664 Initialized build tracking at /tmp/pip-req-tracker-27f5dzfl
2021-07-12T20:11:54,664 Created build tracker: /tmp/pip-req-tracker-27f5dzfl
2021-07-12T20:11:54,664 Entered build tracker: /tmp/pip-req-tracker-27f5dzfl
2021-07-12T20:11:54,665 Created temporary directory: /tmp/pip-wheel-128x2da8
2021-07-12T20:11:54,695 1 location(s) to search for versions of biocode:
2021-07-12T20:11:54,695 * https://pypi.org/simple/biocode/
2021-07-12T20:11:54,695 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T20:11:54,696 Getting page https://pypi.org/simple/biocode/
2021-07-12T20:11:54,697 Found index url https://pypi.org/simple
2021-07-12T20:11:54,795   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T20:11:54,796   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T20:11:54,796   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T20:11:54,796   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T20:11:54,796   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T20:11:54,797   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T20:11:54,797   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T20:11:54,797   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T20:11:54,798   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T20:11:54,798   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T20:11:54,798   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T20:11:54,798   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T20:11:54,799   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T20:11:54,799   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T20:11:54,799   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T20:11:54,800   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T20:11:54,800   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T20:11:54,800   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T20:11:54,800   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T20:11:54,801   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T20:11:54,801   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T20:11:54,801   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T20:11:54,801   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T20:11:54,802   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T20:11:54,802   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T20:11:54,802 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T20:11:54,823 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T20:11:54,845 Collecting biocode==0.4.7
2021-07-12T20:11:54,846   Created temporary directory: /tmp/pip-unpack-645iqrgz
2021-07-12T20:11:55,158   Downloading biocode-0.4.7.tar.gz (161 kB)
2021-07-12T20:11:55,473   Added biocode==0.4.7 from https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 to build tracker '/tmp/pip-req-tracker-27f5dzfl'
2021-07-12T20:11:55,474     Running setup.py (path:/tmp/pip-wheel-128x2da8/biocode_498e99a7c69446a19fe56a27fa6dd434/setup.py) egg_info for package biocode
2021-07-12T20:11:55,475     Created temporary directory: /tmp/pip-pip-egg-info-ge54n6ec
2021-07-12T20:11:55,476     Running command python setup.py egg_info
2021-07-12T20:11:56,454     /tmp/pip-wheel-128x2da8/biocode_498e99a7c69446a19fe56a27fa6dd434/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T20:11:56,454       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T20:11:56,699     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T20:11:56,700       warnings.warn(msg)
2021-07-12T20:11:56,835     running egg_info
2021-07-12T20:11:56,837     creating /tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info
2021-07-12T20:11:56,839     writing /tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/PKG-INFO
2021-07-12T20:11:56,842     writing dependency_links to /tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/dependency_links.txt
2021-07-12T20:11:56,844     writing requirements to /tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/requires.txt
2021-07-12T20:11:56,845     writing top-level names to /tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/top_level.txt
2021-07-12T20:11:56,846     writing manifest file '/tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/SOURCES.txt'
2021-07-12T20:11:57,027     reading manifest file '/tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/SOURCES.txt'
2021-07-12T20:11:57,030     reading manifest template 'MANIFEST.in'
2021-07-12T20:11:57,031     warning: no files found matching 'biocode/README.rst'
2021-07-12T20:11:57,032     adding license file 'LICENSE'
2021-07-12T20:11:57,039     writing manifest file '/tmp/pip-pip-egg-info-ge54n6ec/biocode.egg-info/SOURCES.txt'
2021-07-12T20:11:57,123   Source in /tmp/pip-wheel-128x2da8/biocode_498e99a7c69446a19fe56a27fa6dd434 has version 0.4.7, which satisfies requirement biocode==0.4.7 from https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148
2021-07-12T20:11:57,124   Removed biocode==0.4.7 from https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 from build tracker '/tmp/pip-req-tracker-27f5dzfl'
2021-07-12T20:11:57,128 Created temporary directory: /tmp/pip-unpack-7q40u68w
2021-07-12T20:11:57,128 Building wheels for collected packages: biocode
2021-07-12T20:11:57,133   Created temporary directory: /tmp/pip-wheel-du00d85e
2021-07-12T20:11:57,133   Building wheel for biocode (setup.py): started
2021-07-12T20:11:57,133   Destination directory: /tmp/pip-wheel-du00d85e
2021-07-12T20:11:57,133   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-128x2da8/biocode_498e99a7c69446a19fe56a27fa6dd434/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-128x2da8/biocode_498e99a7c69446a19fe56a27fa6dd434/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-du00d85e
2021-07-12T20:11:58,136   /tmp/pip-wheel-128x2da8/biocode_498e99a7c69446a19fe56a27fa6dd434/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T20:11:58,136     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T20:11:58,383   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T20:11:58,384     warnings.warn(msg)
2021-07-12T20:11:58,532   running bdist_wheel
2021-07-12T20:11:58,697   running build
2021-07-12T20:11:58,697   running build_py
2021-07-12T20:11:58,836   creating build
2021-07-12T20:11:58,836   creating build/lib
2021-07-12T20:11:58,837   creating build/lib/biocode
2021-07-12T20:11:58,838   copying biocode/utils.py -> build/lib/biocode
2021-07-12T20:11:58,840   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T20:11:58,842   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T20:11:58,844   copying biocode/things.py -> build/lib/biocode
2021-07-12T20:11:58,847   copying biocode/gff.py -> build/lib/biocode
2021-07-12T20:11:58,850   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T20:11:58,852   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T20:11:58,854   running egg_info
2021-07-12T20:11:58,868   writing biocode.egg-info/PKG-INFO
2021-07-12T20:11:58,870   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T20:11:58,872   writing requirements to biocode.egg-info/requires.txt
2021-07-12T20:11:58,873   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T20:11:58,927   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T20:11:58,932   reading manifest template 'MANIFEST.in'
2021-07-12T20:11:58,932   warning: no files found matching 'biocode/README.rst'
2021-07-12T20:11:58,933   adding license file 'LICENSE'
2021-07-12T20:11:58,942   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T20:11:58,946   creating build/lib/biocode/data
2021-07-12T20:11:58,947   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T20:11:58,951   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T20:11:58,953   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T20:11:58,955   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T20:11:58,959   running build_scripts
2021-07-12T20:11:58,959   creating build/scripts-3.9
2021-07-12T20:11:58,960   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:58,963   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T20:11:58,964   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T20:11:58,966   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:58,968   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T20:11:58,970   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T20:11:58,972   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T20:11:58,974   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T20:11:58,976   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T20:11:58,978   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T20:11:58,980   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T20:11:58,983   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T20:11:58,985   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T20:11:58,986   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T20:11:58,989   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T20:11:58,990   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:58,993   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T20:11:58,994   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T20:11:58,996   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T20:11:58,998   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T20:11:59,000   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T20:11:59,002   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:59,005   copying and adjusting bin/filter_uniref_by_repid.py -> build/scripts-3.9
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2021-07-12T20:11:59,020   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.9
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2021-07-12T20:11:59,028   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
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2021-07-12T20:11:59,037   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:59,039   copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.9
2021-07-12T20:11:59,041   copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.9
2021-07-12T20:11:59,042   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:59,044   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
2021-07-12T20:11:59,046   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.9
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2021-07-12T20:11:59,053   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.9
2021-07-12T20:11:59,056   copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.9
2021-07-12T20:11:59,058   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.9
2021-07-12T20:11:59,060   copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.9
2021-07-12T20:11:59,061   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:59,063   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
2021-07-12T20:11:59,064   copying and adjusting bin/convert_genbank_to_gff3.py -> build/scripts-3.9
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2021-07-12T20:11:59,074   copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.9
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2021-07-12T20:11:59,077   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:59,079   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.9
2021-07-12T20:11:59,080   copying and adjusting bin/make_go_slim.py -> build/scripts-3.9
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2021-07-12T20:11:59,084   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
2021-07-12T20:11:59,086   copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.9
2021-07-12T20:11:59,087   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.9
2021-07-12T20:11:59,090   copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.9
2021-07-12T20:11:59,092   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
2021-07-12T20:11:59,094   copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.9
2021-07-12T20:11:59,096   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T20:11:59,099   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T20:11:59,101   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T20:11:59,104   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T20:11:59,106   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T20:11:59,109   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T20:11:59,110   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T20:11:59,112   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T20:11:59,115   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T20:11:59,117   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T20:11:59,119   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T20:11:59,120   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T20:11:59,122   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T20:11:59,124   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T20:11:59,124   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T20:11:59,124   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
2021-07-12T20:11:59,125   changing mode of build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py from 644 to 755
2021-07-12T20:11:59,125   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T20:11:59,125   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T20:11:59,125   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T20:11:59,126   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
2021-07-12T20:11:59,126   changing mode of build/scripts-3.9/remove_duplicate_features.py from 644 to 755
2021-07-12T20:11:59,126   changing mode of build/scripts-3.9/merge_masked_fasta_files.py from 644 to 755
2021-07-12T20:11:59,127   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T20:11:59,127   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T20:11:59,127   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
2021-07-12T20:11:59,128   changing mode of build/scripts-3.9/filter_fastq_by_N_content.py from 644 to 755
2021-07-12T20:11:59,128   changing mode of build/scripts-3.9/select_training_and_evaluation_transcripts.py from 644 to 755
2021-07-12T20:11:59,128   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T20:11:59,129   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T20:11:59,129   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
2021-07-12T20:11:59,129   changing mode of build/scripts-3.9/validate_feature_boundaries_on_molecules.py from 644 to 755
2021-07-12T20:11:59,130   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T20:11:59,130   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T20:11:59,130   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T20:11:59,131   changing mode of build/scripts-3.9/filter_uniref_by_repid.py from 644 to 755
2021-07-12T20:11:59,131   changing mode of build/scripts-3.9/calculate_query_coverage_by_blast.py from 644 to 755
2021-07-12T20:11:59,132   changing mode of build/scripts-3.9/convert_gff3_to_ncbi_tbl.py from 644 to 755
2021-07-12T20:11:59,132   changing mode of build/scripts-3.9/filter_gff3_by_id_list.py from 644 to 755
2021-07-12T20:11:59,132   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T20:11:59,133   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T20:11:59,133   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T20:11:59,133   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T20:11:59,134   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T20:11:59,134   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T20:11:59,134   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T20:11:59,135   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
2021-07-12T20:11:59,135   changing mode of build/scripts-3.9/report_or_replace_nonstandard_residues.py from 644 to 755
2021-07-12T20:11:59,135   changing mode of build/scripts-3.9/make_go_slim_index.py from 644 to 755
2021-07-12T20:11:59,136   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T20:11:59,136   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T20:11:59,136   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T20:11:59,137   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T20:11:59,137   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T20:11:59,137   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T20:11:59,138   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T20:11:59,138   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T20:11:59,138   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T20:11:59,139   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T20:11:59,139   changing mode of build/scripts-3.9/append_to_column_9_value.py from 644 to 755
2021-07-12T20:11:59,140   changing mode of build/scripts-3.9/split_interleaved_sequence_file.py from 644 to 755
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2021-07-12T20:11:59,141   changing mode of build/scripts-3.9/uniprot_sprot_to_sqlite3.py from 644 to 755
2021-07-12T20:11:59,141   changing mode of build/scripts-3.9/hmmlib_to_sqlite3.py from 644 to 755
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2021-07-12T20:11:59,142   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T20:11:59,142   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T20:11:59,143   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T20:11:59,143   changing mode of build/scripts-3.9/validate_uniref_member_characterization.py from 644 to 755
2021-07-12T20:11:59,143   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T20:11:59,144   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T20:11:59,144   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T20:11:59,144   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T20:11:59,145   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T20:11:59,145   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
2021-07-12T20:11:59,145   changing mode of build/scripts-3.9/make_go_slim.py from 644 to 755
2021-07-12T20:11:59,146   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
2021-07-12T20:11:59,146   changing mode of build/scripts-3.9/make_cufflinks_ids_unique.py from 644 to 755
2021-07-12T20:11:59,146   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
2021-07-12T20:11:59,147   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
2021-07-12T20:11:59,147   changing mode of build/scripts-3.9/create_taxonomy_db.py from 644 to 755
2021-07-12T20:11:59,147   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
2021-07-12T20:11:59,148   changing mode of build/scripts-3.9/tigrfam_info_to_sqlite3.py from 644 to 755
2021-07-12T20:11:59,148   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
2021-07-12T20:11:59,149   changing mode of build/scripts-3.9/reformat_fasta_residue_lengths.py from 644 to 755
2021-07-12T20:11:59,149   changing mode of build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py from 644 to 755
2021-07-12T20:11:59,149   changing mode of build/scripts-3.9/create_rsem_html_table.py from 644 to 755
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2021-07-12T20:11:59,150   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
2021-07-12T20:11:59,150   changing mode of build/scripts-3.9/convert_fastq_to_fasta.py from 644 to 755
2021-07-12T20:11:59,151   changing mode of build/scripts-3.9/write_fasta_from_gff.py from 644 to 755
2021-07-12T20:11:59,151   changing mode of build/scripts-3.9/convert_pasa_gff_to_models.py from 644 to 755
2021-07-12T20:11:59,151   changing mode of build/scripts-3.9/set_source_column.py from 644 to 755
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2021-07-12T20:11:59,160   installing to build/bdist.linux-armv7l/wheel
2021-07-12T20:11:59,160   running install
2021-07-12T20:11:59,162   running install_lib
2021-07-12T20:11:59,167   creating build/bdist.linux-armv7l
2021-07-12T20:11:59,167   creating build/bdist.linux-armv7l/wheel
2021-07-12T20:11:59,169   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,171   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,174   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,176   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,179   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,183   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,186   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,189   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T20:11:59,190   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T20:11:59,194   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T20:11:59,196   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T20:11:59,200   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T20:11:59,202   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T20:11:59,205   running install_egg_info
2021-07-12T20:11:59,211   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.4.7-py3.9.egg-info
2021-07-12T20:11:59,224   running install_scripts
2021-07-12T20:11:59,254   creating build/bdist.linux-armv7l/wheel/biocode-0.4.7.data
2021-07-12T20:11:59,255   creating build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,256   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,258   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,260   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,262   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,264   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,266   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,267   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,269   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,271   copying build/scripts-3.9/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,273   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,275   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,277   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,280   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,282   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,284   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,286   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,288   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,290   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,292   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,295   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,297   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,299   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,301   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,303   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,305   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,307   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,310   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,312   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,314   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,316   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,318   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,320   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,323   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,325   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,327   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,329   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,331   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,334   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,336   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,338   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,341   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,342   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,344   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,346   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,348   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,350   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,353   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,355   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,357   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,359   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,361   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,363   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,365   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,368   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,370   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,372   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,374   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,377   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,379   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,382   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,386   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,388   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,391   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,394   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,397   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,399   copying build/scripts-3.9/validate_uniref_member_characterization.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,403   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,405   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,408   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,410   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,412   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,414   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,417   copying build/scripts-3.9/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,419   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,422   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,425   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,428   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,431   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,433   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,436   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,439   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,441   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,444   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,446   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,448   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts
2021-07-12T20:11:59,451   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_scipio_gff_to_gff3.py to 755
2021-07-12T20:11:59,451   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T20:11:59,451   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/fasta_base_content.py to 755
2021-07-12T20:11:59,452   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_gff3_to_ncbi_tbl.py to 755
2021-07-12T20:11:59,452   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_gff3_to_gene_association_format.py to 755
2021-07-12T20:11:59,452   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_fastq_to_fasta.py to 755
2021-07-12T20:11:59,453   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/get_mpilup_from_id_list.py to 755
2021-07-12T20:11:59,453   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/report_basic_gff_model_agreement.py to 755
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2021-07-12T20:11:59,454   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/remove_orphaned_features.py to 755
2021-07-12T20:11:59,454   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
2021-07-12T20:11:59,454   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/randomly_subsample_fastq.py to 755
2021-07-12T20:11:59,455   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T20:11:59,455   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/merge_masked_fasta_files.py to 755
2021-07-12T20:11:59,456   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T20:11:59,456   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/filter_fasta_by_header_regex.py to 755
2021-07-12T20:11:59,456   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T20:11:59,457   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/detect_inverted_repeats.py to 755
2021-07-12T20:11:59,457   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/hmmlib_to_sqlite3.py to 755
2021-07-12T20:11:59,458   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/interleave_fasta.py to 755
2021-07-12T20:11:59,458   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T20:11:59,458   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/make_go_slim_index.py to 755
2021-07-12T20:11:59,459   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/split_isoforms_into_individual_genes.py to 755
2021-07-12T20:11:59,459   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/append_to_fasta_header.py to 755
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2021-07-12T20:11:59,460   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_augustus_to_gff3.py to 755
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2021-07-12T20:11:59,460   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/prepend_to_fasta_header.py to 755
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2021-07-12T20:11:59,462   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/mark_partial_genes.py to 755
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2021-07-12T20:11:59,464   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755
2021-07-12T20:11:59,464   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/tigrfam_info_to_sqlite3.py to 755
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2021-07-12T20:11:59,466   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/remove_masked_gene_models.py to 755
2021-07-12T20:11:59,466   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/uniref_to_sqlite3.py to 755
2021-07-12T20:11:59,466   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/create_rsem_html_table.py to 755
2021-07-12T20:11:59,467   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T20:11:59,467   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/report_gff3_statistics.py to 755
2021-07-12T20:11:59,467   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/append_to_fastq_read_header.py to 755
2021-07-12T20:11:59,468   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_aat_btab_to_gff3.py to 755
2021-07-12T20:11:59,469   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/eggnog_to_sqlite3.py to 755
2021-07-12T20:11:59,469   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/set_source_column.py to 755
2021-07-12T20:11:59,469   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/report_coverage_gaps.py to 755
2021-07-12T20:11:59,469   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T20:11:59,470   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/filter_uniref_by_taxonomy.py to 755
2021-07-12T20:11:59,470   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/extend_genes_to_stops.py to 755
2021-07-12T20:11:59,471   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/compare_gene_structures.py to 755
2021-07-12T20:11:59,471   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/report_or_replace_nonstandard_residues.py to 755
2021-07-12T20:11:59,471   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/make_cufflinks_ids_unique.py to 755
2021-07-12T20:11:59,472   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/remove_duplicate_features.py to 755
2021-07-12T20:11:59,472   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_fasta_contigs_to_gff3.py to 755
2021-07-12T20:11:59,472   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/biothings_coordinate_comparisons.py to 755
2021-07-12T20:11:59,473   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/validate_uniref_member_characterization.py to 755
2021-07-12T20:11:59,473   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/validate_fasta.py to 755
2021-07-12T20:11:59,473   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/filter_fastq_by_N_content.py to 755
2021-07-12T20:11:59,474   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/check_for_embedded_fasta_headers.py to 755
2021-07-12T20:11:59,474   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/correct_gff3_CDS_phase_column.py to 755
2021-07-12T20:11:59,474   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/check_gff_for_internal_stops.py to 755
2021-07-12T20:11:59,475   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/add_gff3_locus_tags.py to 755
2021-07-12T20:11:59,475   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/filter_uniref_by_repid.py to 755
2021-07-12T20:11:59,475   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/write_fasta_from_gff.py to 755
2021-07-12T20:11:59,476   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_cegma_gff_to_gff3.py to 755
2021-07-12T20:11:59,476   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/append_to_column_9_value.py to 755
2021-07-12T20:11:59,476   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/reorient_sequences_by_id.py to 755
2021-07-12T20:11:59,477   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T20:11:59,477   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_pasa_gff_to_models.py to 755
2021-07-12T20:11:59,478   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/subsample_fasta.py to 755
2021-07-12T20:11:59,478   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/extract_fasta_regions.py to 755
2021-07-12T20:11:59,478   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T20:11:59,479   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/convert_prodigal_to_gff3.py to 755
2021-07-12T20:11:59,479   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/fasta_size_distribution_plot.py to 755
2021-07-12T20:11:59,479   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.4.7.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T20:11:59,504   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T20:11:59,510   creating build/bdist.linux-armv7l/wheel/biocode-0.4.7.dist-info/WHEEL
2021-07-12T20:11:59,513   creating '/tmp/pip-wheel-du00d85e/biocode-0.4.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T20:11:59,515   adding 'biocode/__init__.py'
2021-07-12T20:11:59,519   adding 'biocode/annotation.py'
2021-07-12T20:11:59,521   adding 'biocode/genbank.py'
2021-07-12T20:11:59,526   adding 'biocode/gff.py'
2021-07-12T20:11:59,528   adding 'biocode/tbl.py'
2021-07-12T20:11:59,536   adding 'biocode/things.py'
2021-07-12T20:11:59,538   adding 'biocode/utils.py'
2021-07-12T20:11:59,543   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T20:11:59,545   adding 'biocode/data/__init__.py'
2021-07-12T20:11:59,546   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T20:11:59,548   adding 'biocode/data/rsem_html_table.template'
2021-07-12T20:11:59,553   adding 'biocode-0.4.7.data/scripts/add_gff3_locus_tags.py'
2021-07-12T20:11:59,555   adding 'biocode-0.4.7.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T20:11:59,556   adding 'biocode-0.4.7.data/scripts/append_to_column_9_value.py'
2021-07-12T20:11:59,557   adding 'biocode-0.4.7.data/scripts/append_to_fasta_header.py'
2021-07-12T20:11:59,558   adding 'biocode-0.4.7.data/scripts/append_to_fastq_read_header.py'
2021-07-12T20:11:59,560   adding 'biocode-0.4.7.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T20:11:59,561   adding 'biocode-0.4.7.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T20:11:59,563   adding 'biocode-0.4.7.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T20:11:59,564   adding 'biocode-0.4.7.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T20:11:59,567   adding 'biocode-0.4.7.data/scripts/compare_gene_structures.py'
2021-07-12T20:11:59,569   adding 'biocode-0.4.7.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T20:11:59,571   adding 'biocode-0.4.7.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T20:11:59,573   adding 'biocode-0.4.7.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T20:11:59,575   adding 'biocode-0.4.7.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T20:11:59,576   adding 'biocode-0.4.7.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T20:11:59,578   adding 'biocode-0.4.7.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T20:11:59,579   adding 'biocode-0.4.7.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T20:11:59,581   adding 'biocode-0.4.7.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T20:11:59,583   adding 'biocode-0.4.7.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T20:11:59,584   adding 'biocode-0.4.7.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T20:11:59,586   adding 'biocode-0.4.7.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T20:11:59,587   adding 'biocode-0.4.7.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T20:11:59,589   adding 'biocode-0.4.7.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T20:11:59,590   adding 'biocode-0.4.7.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T20:11:59,592   adding 'biocode-0.4.7.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T20:11:59,593   adding 'biocode-0.4.7.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T20:11:59,595   adding 'biocode-0.4.7.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T20:11:59,596   adding 'biocode-0.4.7.data/scripts/create_rsem_html_table.py'
2021-07-12T20:11:59,598   adding 'biocode-0.4.7.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T20:11:59,600   adding 'biocode-0.4.7.data/scripts/create_taxonomy_db.py'
2021-07-12T20:11:59,601   adding 'biocode-0.4.7.data/scripts/detect_inverted_repeats.py'
2021-07-12T20:11:59,603   adding 'biocode-0.4.7.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T20:11:59,605   adding 'biocode-0.4.7.data/scripts/extend_genes_to_stops.py'
2021-07-12T20:11:59,606   adding 'biocode-0.4.7.data/scripts/extract_fasta_regions.py'
2021-07-12T20:11:59,607   adding 'biocode-0.4.7.data/scripts/fasta_base_content.py'
2021-07-12T20:11:59,609   adding 'biocode-0.4.7.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T20:11:59,610   adding 'biocode-0.4.7.data/scripts/fastq_simple_stats.py'
2021-07-12T20:11:59,611   adding 'biocode-0.4.7.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T20:11:59,613   adding 'biocode-0.4.7.data/scripts/filter_fasta_by_type.py'
2021-07-12T20:11:59,614   adding 'biocode-0.4.7.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T20:11:59,616   adding 'biocode-0.4.7.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T20:11:59,617   adding 'biocode-0.4.7.data/scripts/filter_uniref_by_repid.py'
2021-07-12T20:11:59,618   adding 'biocode-0.4.7.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T20:11:59,620   adding 'biocode-0.4.7.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T20:11:59,622   adding 'biocode-0.4.7.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T20:11:59,623   adding 'biocode-0.4.7.data/scripts/interleave_fasta.py'
2021-07-12T20:11:59,624   adding 'biocode-0.4.7.data/scripts/interleave_fastq.py'
2021-07-12T20:11:59,625   adding 'biocode-0.4.7.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T20:11:59,627   adding 'biocode-0.4.7.data/scripts/make_go_slim.py'
2021-07-12T20:11:59,629   adding 'biocode-0.4.7.data/scripts/make_go_slim_index.py'
2021-07-12T20:11:59,630   adding 'biocode-0.4.7.data/scripts/mark_partial_genes.py'
2021-07-12T20:11:59,632   adding 'biocode-0.4.7.data/scripts/merge_bam_files.py'
2021-07-12T20:11:59,633   adding 'biocode-0.4.7.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T20:11:59,634   adding 'biocode-0.4.7.data/scripts/merge_masked_fasta_files.py'
2021-07-12T20:11:59,636   adding 'biocode-0.4.7.data/scripts/prepend_to_fasta_header.py'
2021-07-12T20:11:59,637   adding 'biocode-0.4.7.data/scripts/randomly_subsample_fastq.py'
2021-07-12T20:11:59,639   adding 'biocode-0.4.7.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T20:11:59,640   adding 'biocode-0.4.7.data/scripts/remove_duplicate_features.py'
2021-07-12T20:11:59,641   adding 'biocode-0.4.7.data/scripts/remove_duplicate_sequences.py'
2021-07-12T20:11:59,643   adding 'biocode-0.4.7.data/scripts/remove_masked_gene_models.py'
2021-07-12T20:11:59,644   adding 'biocode-0.4.7.data/scripts/remove_orphaned_features.py'
2021-07-12T20:11:59,645   adding 'biocode-0.4.7.data/scripts/reorient_sequences_by_id.py'
2021-07-12T20:11:59,646   adding 'biocode-0.4.7.data/scripts/replace_gff_type_column_value.py'
2021-07-12T20:11:59,648   adding 'biocode-0.4.7.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T20:11:59,649   adding 'biocode-0.4.7.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T20:11:59,651   adding 'biocode-0.4.7.data/scripts/report_coverage_gaps.py'
2021-07-12T20:11:59,652   adding 'biocode-0.4.7.data/scripts/report_gff3_statistics.py'
2021-07-12T20:11:59,654   adding 'biocode-0.4.7.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T20:11:59,656   adding 'biocode-0.4.7.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T20:11:59,657   adding 'biocode-0.4.7.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T20:11:59,659   adding 'biocode-0.4.7.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T20:11:59,660   adding 'biocode-0.4.7.data/scripts/set_source_column.py'
2021-07-12T20:11:59,661   adding 'biocode-0.4.7.data/scripts/split_fasta_into_even_files.py'
2021-07-12T20:11:59,663   adding 'biocode-0.4.7.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T20:11:59,664   adding 'biocode-0.4.7.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T20:11:59,665   adding 'biocode-0.4.7.data/scripts/split_molecules_on_gaps.py'
2021-07-12T20:11:59,667   adding 'biocode-0.4.7.data/scripts/subsample_fasta.py'
2021-07-12T20:11:59,668   adding 'biocode-0.4.7.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T20:11:59,670   adding 'biocode-0.4.7.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T20:11:59,672   adding 'biocode-0.4.7.data/scripts/uniref_to_sqlite3.py'
2021-07-12T20:11:59,673   adding 'biocode-0.4.7.data/scripts/update_selected_column9_values.py'
2021-07-12T20:11:59,675   adding 'biocode-0.4.7.data/scripts/validate_fasta.py'
2021-07-12T20:11:59,676   adding 'biocode-0.4.7.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T20:11:59,678   adding 'biocode-0.4.7.data/scripts/validate_uniref_member_characterization.py'
2021-07-12T20:11:59,679   adding 'biocode-0.4.7.data/scripts/write_fasta_from_gff.py'
2021-07-12T20:11:59,682   adding 'biocode-0.4.7.dist-info/LICENSE'
2021-07-12T20:11:59,683   adding 'biocode-0.4.7.dist-info/METADATA'
2021-07-12T20:11:59,683   adding 'biocode-0.4.7.dist-info/WHEEL'
2021-07-12T20:11:59,684   adding 'biocode-0.4.7.dist-info/top_level.txt'
2021-07-12T20:11:59,687   adding 'biocode-0.4.7.dist-info/RECORD'
2021-07-12T20:11:59,692   removing build/bdist.linux-armv7l/wheel
2021-07-12T20:11:59,817   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T20:11:59,822   Created wheel for biocode: filename=biocode-0.4.7-py3-none-any.whl size=215632 sha256=c6f756e5d1f8d1c212a939c1081689f81a283788ef9a4b6c034eea0031d77ac3
2021-07-12T20:11:59,823   Stored in directory: /tmp/pip-ephem-wheel-cache-n68oxyuz/wheels/52/a0/97/fc191f1a25ff6acc1aa9566931ccecf398a9b7aab50c537530
2021-07-12T20:11:59,834 Successfully built biocode
2021-07-12T20:11:59,845 Removed build tracker: '/tmp/pip-req-tracker-27f5dzfl'