2021-07-12T21:24:05,393 Created temporary directory: /tmp/pip-ephem-wheel-cache-pb2_b764 2021-07-12T21:24:05,397 Created temporary directory: /tmp/pip-req-tracker-qfhi53dx 2021-07-12T21:24:05,397 Initialized build tracking at /tmp/pip-req-tracker-qfhi53dx 2021-07-12T21:24:05,398 Created build tracker: /tmp/pip-req-tracker-qfhi53dx 2021-07-12T21:24:05,398 Entered build tracker: /tmp/pip-req-tracker-qfhi53dx 2021-07-12T21:24:05,399 Created temporary directory: /tmp/pip-wheel-y50afs84 2021-07-12T21:24:05,444 1 location(s) to search for versions of mikado: 2021-07-12T21:24:05,444 * https://pypi.org/simple/mikado/ 2021-07-12T21:24:05,445 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2021-07-12T21:24:05,446 Getting page https://pypi.org/simple/mikado/ 2021-07-12T21:24:05,448 Found index url https://pypi.org/simple 2021-07-12T21:24:05,713 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2021-07-12T21:24:05,714 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2021-07-12T21:24:05,715 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2021-07-12T21:24:05,716 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0 2021-07-12T21:24:05,716 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1 2021-07-12T21:24:05,717 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2 2021-07-12T21:24:05,718 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1 2021-07-12T21:24:05,719 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2 2021-07-12T21:24:05,748 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/) 2021-07-12T21:24:05,749 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4 2021-07-12T21:24:05,750 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1 2021-07-12T21:24:05,750 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2 2021-07-12T21:24:05,752 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2021-07-12T21:24:05,753 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2021-07-12T21:24:05,755 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2021-07-12T21:24:05,756 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2021-07-12T21:24:05,757 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2021-07-12T21:24:05,759 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2021-07-12T21:24:05,761 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2021-07-12T21:24:05,763 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2021-07-12T21:24:05,764 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2021-07-12T21:24:05,766 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2021-07-12T21:24:05,767 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2021-07-12T21:24:05,768 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2021-07-12T21:24:05,769 Skipping link: not a file: https://pypi.org/simple/mikado/ 2021-07-12T21:24:05,775 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2021-07-12T21:24:05,810 Collecting mikado==1.1 2021-07-12T21:24:05,813 Created temporary directory: /tmp/pip-unpack-mtzwlsk7 2021-07-12T21:24:06,652 Downloading Mikado-1.1.tar.gz (17.5 MB) 2021-07-12T21:24:12,853 Added mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e to build tracker '/tmp/pip-req-tracker-qfhi53dx' 2021-07-12T21:24:12,855 Running setup.py (path:/tmp/pip-wheel-y50afs84/mikado_6b04eefc01ea46eb9debb7fa8e053be4/setup.py) egg_info for package mikado 2021-07-12T21:24:12,856 Created temporary directory: /tmp/pip-pip-egg-info-wdxz2pjg 2021-07-12T21:24:12,857 Running command python setup.py egg_info 2021-07-12T21:24:15,989 running egg_info 2021-07-12T21:24:15,992 creating /tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info 2021-07-12T21:24:15,994 writing /tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/PKG-INFO 2021-07-12T21:24:15,999 writing dependency_links to /tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/dependency_links.txt 2021-07-12T21:24:16,002 writing entry points to /tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/entry_points.txt 2021-07-12T21:24:16,004 writing requirements to /tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/requires.txt 2021-07-12T21:24:16,006 writing top-level names to /tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/top_level.txt 2021-07-12T21:24:16,009 writing manifest file '/tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/SOURCES.txt' 2021-07-12T21:24:16,371 reading manifest file '/tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/SOURCES.txt' 2021-07-12T21:24:16,375 reading manifest template 'MANIFEST.in' 2021-07-12T21:24:18,378 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-12T21:24:18,379 adding license file 'AUTHORS' 2021-07-12T21:24:18,411 writing manifest file '/tmp/pip-pip-egg-info-wdxz2pjg/Mikado.egg-info/SOURCES.txt' 2021-07-12T21:24:18,578 Source in /tmp/pip-wheel-y50afs84/mikado_6b04eefc01ea46eb9debb7fa8e053be4 has version 1.1, which satisfies requirement mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e 2021-07-12T21:24:18,579 Removed mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e from build tracker '/tmp/pip-req-tracker-qfhi53dx' 2021-07-12T21:24:18,597 Created temporary directory: /tmp/pip-unpack-yv0j1v6z 2021-07-12T21:24:18,598 Building wheels for collected packages: mikado 2021-07-12T21:24:18,604 Created temporary directory: /tmp/pip-wheel-k45gtn2i 2021-07-12T21:24:18,605 Building wheel for mikado (setup.py): started 2021-07-12T21:24:18,606 Destination directory: /tmp/pip-wheel-k45gtn2i 2021-07-12T21:24:18,606 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-y50afs84/mikado_6b04eefc01ea46eb9debb7fa8e053be4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-y50afs84/mikado_6b04eefc01ea46eb9debb7fa8e053be4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-k45gtn2i 2021-07-12T21:24:21,643 running bdist_wheel 2021-07-12T21:24:21,660 running build 2021-07-12T21:24:21,660 running build_py 2021-07-12T21:24:21,903 creating build/lib.linux-armv7l-3.9 2021-07-12T21:24:21,904 creating build/lib.linux-armv7l-3.9/Mikado 2021-07-12T21:24:21,907 copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-12T21:24:21,911 copying Mikado/version.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-12T21:24:21,915 copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-12T21:24:21,920 creating build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,922 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,926 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,930 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,936 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,941 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,946 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,953 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,957 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,962 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,968 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,972 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,975 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,980 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,984 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:21,998 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,002 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,005 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,009 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,013 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,017 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,021 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,025 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,029 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,034 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:22,039 creating build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:22,041 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:22,045 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:22,049 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:22,055 creating build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,057 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,061 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,065 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,070 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,076 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,082 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,086 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-12T21:24:22,091 creating build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:22,092 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:22,100 creating build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,102 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,107 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,114 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,119 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,122 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,128 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:22,132 creating build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-12T21:24:22,134 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-12T21:24:22,138 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-12T21:24:22,142 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-12T21:24:22,146 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-12T21:24:22,150 creating build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,152 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,157 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,160 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,164 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,169 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,173 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,177 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,181 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,185 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-12T21:24:22,189 creating build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-12T21:24:22,191 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-12T21:24:22,197 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-12T21:24:22,203 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-12T21:24:22,208 creating build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-12T21:24:22,209 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-12T21:24:22,214 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-12T21:24:22,219 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-12T21:24:22,223 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-12T21:24:22,227 creating build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:22,229 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:22,233 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:22,239 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:22,243 creating build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,245 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,250 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,255 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,260 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,264 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,267 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,271 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-12T21:24:22,275 creating build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-12T21:24:22,277 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-12T21:24:22,281 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-12T21:24:22,288 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-12T21:24:22,291 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-12T21:24:22,296 creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,298 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,302 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,306 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,309 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,312 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,315 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,319 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-12T21:24:22,323 creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,325 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,329 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,332 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,336 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,339 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,343 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,347 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,350 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,354 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-12T21:24:22,359 creating build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-12T21:24:22,360 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-12T21:24:22,365 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-12T21:24:22,369 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-12T21:24:22,386 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-12T21:24:22,390 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-12T21:24:22,393 running egg_info 2021-07-12T21:24:22,424 writing Mikado.egg-info/PKG-INFO 2021-07-12T21:24:22,427 writing dependency_links to Mikado.egg-info/dependency_links.txt 2021-07-12T21:24:22,430 writing entry points to Mikado.egg-info/entry_points.txt 2021-07-12T21:24:22,432 writing requirements to Mikado.egg-info/requires.txt 2021-07-12T21:24:22,435 writing top-level names to Mikado.egg-info/top_level.txt 2021-07-12T21:24:22,506 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-12T21:24:22,533 reading manifest template 'MANIFEST.in' 2021-07-12T21:24:24,391 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-12T21:24:24,391 adding license file 'AUTHORS' 2021-07-12T21:24:24,440 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-12T21:24:24,508 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,698 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,702 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,706 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,710 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,714 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,722 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,761 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,815 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,820 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,823 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,826 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,829 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,833 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,837 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,841 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,845 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,848 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-12T21:24:24,997 creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:24,998 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,001 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,004 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,009 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,012 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,016 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,020 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,023 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,026 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,029 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,033 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,037 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,042 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,046 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,049 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,052 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,056 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,059 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,062 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,065 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,069 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,073 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,077 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,081 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,084 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,088 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,091 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,095 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,104 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,108 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,112 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,116 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,120 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,123 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,126 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,130 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,133 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,139 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,145 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,149 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,153 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,160 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,170 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,181 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,187 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,193 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,198 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,205 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,210 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,215 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,221 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,226 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,231 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,235 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,239 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,244 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,249 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,255 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,259 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,263 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,268 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,274 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,279 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,284 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,298 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,301 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,305 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,310 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,315 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,320 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,323 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,327 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,332 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,337 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,341 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-12T21:24:25,345 creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-12T21:24:25,347 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-12T21:24:25,350 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-12T21:24:25,354 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-12T21:24:25,359 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:25,393 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:25,398 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:25,409 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:25,412 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:25,416 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:25,420 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:25,424 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:25,428 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:25,432 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-12T21:24:25,438 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:25,465 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:25,469 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:25,474 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:25,486 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:25,490 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:25,494 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:25,500 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:25,505 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:25,509 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-12T21:24:25,513 creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,515 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,519 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,524 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,537 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,540 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,543 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,547 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,550 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,553 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-12T21:24:25,572 running build_ext 2021-07-12T21:24:25,579 building 'Mikado.utilities.overlap' extension 2021-07-12T21:24:25,580 creating build/temp.linux-armv7l-3.9 2021-07-12T21:24:25,581 creating build/temp.linux-armv7l-3.9/Mikado 2021-07-12T21:24:25,582 creating build/temp.linux-armv7l-3.9/Mikado/utilities 2021-07-12T21:24:25,583 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o 2021-07-12T21:24:26,164 Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T21:24:26,165 Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,165 2374 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,166 | ^ 2021-07-12T21:24:26,166 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,167 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,167 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,167 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,168 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,168 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,168 Mikado/utilities/overlap.c:2374:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,169 2374 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,169 | ^ 2021-07-12T21:24:26,169 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,170 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,170 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,170 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:26,170 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:26,170 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,171 Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,171 2374 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,171 | ^ 2021-07-12T21:24:26,171 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,171 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,172 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,172 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,172 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,172 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,173 Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,173 2374 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,173 | ^ 2021-07-12T21:24:26,174 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,184 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,185 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,185 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,186 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,186 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,186 Mikado/utilities/overlap.c:2374:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,187 2374 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,187 | ^ 2021-07-12T21:24:26,187 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,187 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,188 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,188 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:26,188 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:26,189 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,189 Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,190 2374 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,190 | ^ 2021-07-12T21:24:26,190 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,190 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,191 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,191 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,191 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,191 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,192 Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,192 2390 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,193 | ^ 2021-07-12T21:24:26,193 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,193 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,194 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,214 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,215 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,215 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,216 Mikado/utilities/overlap.c:2390:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,216 2390 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,216 | ^ 2021-07-12T21:24:26,217 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,217 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,217 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,218 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:26,218 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:26,218 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,219 Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,219 2390 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,219 | ^ 2021-07-12T21:24:26,220 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,220 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,220 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,221 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,221 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,222 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,222 Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,222 2390 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,223 | ^ 2021-07-12T21:24:26,223 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,223 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,224 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,224 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,235 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,235 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,235 Mikado/utilities/overlap.c:2390:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,236 2390 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,236 | ^ 2021-07-12T21:24:26,236 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,236 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,237 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,237 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:26,237 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:26,238 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:26,238 Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:26,238 2390 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:26,239 | ^ 2021-07-12T21:24:26,239 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:26,239 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:26,240 from Mikado/utilities/overlap.c:11: 2021-07-12T21:24:26,240 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:26,240 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:26,241 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:28,583 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so 2021-07-12T21:24:28,784 building 'Mikado.scales.f1' extension 2021-07-12T21:24:28,785 creating build/temp.linux-armv7l-3.9/Mikado/scales 2021-07-12T21:24:28,785 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o 2021-07-12T21:24:29,339 Mikado/scales/f1.c: In function ‘__Pyx_PyCFunction_FastCall’: 2021-07-12T21:24:29,340 Mikado/scales/f1.c:1821:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’ 2021-07-12T21:24:29,340 1821 | return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); 2021-07-12T21:24:29,340 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,350 Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T21:24:29,351 Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,351 2163 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,352 | ^ 2021-07-12T21:24:29,352 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,352 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,352 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,353 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,353 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,353 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,354 Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,354 2163 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,354 | ^ 2021-07-12T21:24:29,354 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,355 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,355 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,355 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:29,355 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:29,356 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,356 Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,356 2163 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,356 | ^ 2021-07-12T21:24:29,357 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,357 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,357 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,357 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,358 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,358 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,358 Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,358 2163 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,359 | ^ 2021-07-12T21:24:29,359 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,359 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,359 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,360 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,360 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,360 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,360 Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,361 2163 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,361 | ^ 2021-07-12T21:24:29,361 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,361 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,362 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,362 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:29,362 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:29,362 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,363 Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,363 2163 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,363 | ^ 2021-07-12T21:24:29,363 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,363 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,364 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,364 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,364 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,364 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,364 Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,365 2179 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,365 | ^ 2021-07-12T21:24:29,365 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,366 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,366 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,366 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,366 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,367 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,367 Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,367 2179 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,367 | ^ 2021-07-12T21:24:29,368 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,368 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,368 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,369 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:29,369 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:29,369 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,369 Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,370 2179 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,370 | ^ 2021-07-12T21:24:29,370 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,370 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,371 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,371 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,371 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,371 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,372 Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,372 2179 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,372 | ^ 2021-07-12T21:24:29,372 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,373 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,373 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,373 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,373 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,374 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,374 Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,374 2179 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,375 | ^ 2021-07-12T21:24:29,375 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,375 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,375 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,375 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T21:24:29,376 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T21:24:29,376 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,376 Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T21:24:29,376 2179 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T21:24:29,377 | ^ 2021-07-12T21:24:29,377 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T21:24:29,377 from /usr/include/python3.9/Python.h:97, 2021-07-12T21:24:29,377 from Mikado/scales/f1.c:11: 2021-07-12T21:24:29,378 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T21:24:29,378 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T21:24:29,378 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T21:24:29,438 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T21:24:29,613 Building wheel for mikado (setup.py): finished with status 'error' 2021-07-12T21:24:29,614 ERROR: Failed building wheel for mikado 2021-07-12T21:24:29,615 Running setup.py clean for mikado 2021-07-12T21:24:29,616 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-y50afs84/mikado_6b04eefc01ea46eb9debb7fa8e053be4/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-y50afs84/mikado_6b04eefc01ea46eb9debb7fa8e053be4/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T21:24:33,800 running clean 2021-07-12T21:24:33,804 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-12T21:24:33,821 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-12T21:24:34,056 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-12T21:24:34,056 'build/scripts-3.9' does not exist -- can't clean it 2021-07-12T21:24:34,206 Failed to build mikado 2021-07-12T21:24:34,207 ERROR: Failed to build one or more wheels 2021-07-12T21:24:34,208 Exception information: 2021-07-12T21:24:34,208 Traceback (most recent call last): 2021-07-12T21:24:34,208 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T21:24:34,208 status = self.run(options, args) 2021-07-12T21:24:34,208 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T21:24:34,208 return func(self, options, args) 2021-07-12T21:24:34,208 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T21:24:34,208 raise CommandError( 2021-07-12T21:24:34,208 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T21:24:34,225 Removed build tracker: '/tmp/pip-req-tracker-qfhi53dx'