2021-07-12T21:24:36,070 Created temporary directory: /tmp/pip-ephem-wheel-cache-uoje1hge
2021-07-12T21:24:36,074 Created temporary directory: /tmp/pip-req-tracker-_98n5hlh
2021-07-12T21:24:36,074 Initialized build tracking at /tmp/pip-req-tracker-_98n5hlh
2021-07-12T21:24:36,074 Created build tracker: /tmp/pip-req-tracker-_98n5hlh
2021-07-12T21:24:36,075 Entered build tracker: /tmp/pip-req-tracker-_98n5hlh
2021-07-12T21:24:36,075 Created temporary directory: /tmp/pip-wheel-bg_kxhr8
2021-07-12T21:24:36,111 1 location(s) to search for versions of biocode:
2021-07-12T21:24:36,111 * https://pypi.org/simple/biocode/
2021-07-12T21:24:36,111 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T21:24:36,112 Getting page https://pypi.org/simple/biocode/
2021-07-12T21:24:36,114 Found index url https://pypi.org/simple
2021-07-12T21:24:36,226   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T21:24:36,227   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T21:24:36,227   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T21:24:36,228   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T21:24:36,228   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T21:24:36,229   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T21:24:36,229   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T21:24:36,230   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T21:24:36,230   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T21:24:36,231   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T21:24:36,231   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T21:24:36,231   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T21:24:36,232   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T21:24:36,232   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T21:24:36,233   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T21:24:36,233   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T21:24:36,234   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T21:24:36,234   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T21:24:36,235   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T21:24:36,235   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T21:24:36,236   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T21:24:36,236   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T21:24:36,237   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T21:24:36,237   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T21:24:36,237   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T21:24:36,238 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T21:24:36,263 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T21:24:36,286 Collecting biocode==0.5.2
2021-07-12T21:24:36,288   Created temporary directory: /tmp/pip-unpack-dk9li26v
2021-07-12T21:24:36,624   Downloading biocode-0.5.2.tar.gz (163 kB)
2021-07-12T21:24:36,942   Added biocode==0.5.2 from https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 to build tracker '/tmp/pip-req-tracker-_98n5hlh'
2021-07-12T21:24:36,943     Running setup.py (path:/tmp/pip-wheel-bg_kxhr8/biocode_b8ee047a52ac4393a940f4e6761eb439/setup.py) egg_info for package biocode
2021-07-12T21:24:36,944     Created temporary directory: /tmp/pip-pip-egg-info-f2do5wyp
2021-07-12T21:24:36,944     Running command python setup.py egg_info
2021-07-12T21:24:37,899     /tmp/pip-wheel-bg_kxhr8/biocode_b8ee047a52ac4393a940f4e6761eb439/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T21:24:37,900       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T21:24:38,121     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T21:24:38,121       warnings.warn(msg)
2021-07-12T21:24:38,246     running egg_info
2021-07-12T21:24:38,249     creating /tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info
2021-07-12T21:24:38,250     writing /tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/PKG-INFO
2021-07-12T21:24:38,253     writing dependency_links to /tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/dependency_links.txt
2021-07-12T21:24:38,255     writing requirements to /tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/requires.txt
2021-07-12T21:24:38,256     writing top-level names to /tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/top_level.txt
2021-07-12T21:24:38,258     writing manifest file '/tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/SOURCES.txt'
2021-07-12T21:24:38,421     reading manifest file '/tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/SOURCES.txt'
2021-07-12T21:24:38,423     reading manifest template 'MANIFEST.in'
2021-07-12T21:24:38,424     warning: no files found matching 'biocode/README.rst'
2021-07-12T21:24:38,426     adding license file 'LICENSE'
2021-07-12T21:24:38,431     writing manifest file '/tmp/pip-pip-egg-info-f2do5wyp/biocode.egg-info/SOURCES.txt'
2021-07-12T21:24:38,512   Source in /tmp/pip-wheel-bg_kxhr8/biocode_b8ee047a52ac4393a940f4e6761eb439 has version 0.5.2, which satisfies requirement biocode==0.5.2 from https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01
2021-07-12T21:24:38,513   Removed biocode==0.5.2 from https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 from build tracker '/tmp/pip-req-tracker-_98n5hlh'
2021-07-12T21:24:38,518 Created temporary directory: /tmp/pip-unpack-8tp53xs3
2021-07-12T21:24:38,519 Building wheels for collected packages: biocode
2021-07-12T21:24:38,523   Created temporary directory: /tmp/pip-wheel-trg_6fyc
2021-07-12T21:24:38,523   Building wheel for biocode (setup.py): started
2021-07-12T21:24:38,524   Destination directory: /tmp/pip-wheel-trg_6fyc
2021-07-12T21:24:38,524   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bg_kxhr8/biocode_b8ee047a52ac4393a940f4e6761eb439/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bg_kxhr8/biocode_b8ee047a52ac4393a940f4e6761eb439/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-trg_6fyc
2021-07-12T21:24:39,481   /tmp/pip-wheel-bg_kxhr8/biocode_b8ee047a52ac4393a940f4e6761eb439/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T21:24:39,482     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T21:24:39,720   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T21:24:39,721     warnings.warn(msg)
2021-07-12T21:24:39,881   running bdist_wheel
2021-07-12T21:24:40,119   running build
2021-07-12T21:24:40,119   running build_py
2021-07-12T21:24:40,279   creating build
2021-07-12T21:24:40,280   creating build/lib
2021-07-12T21:24:40,280   creating build/lib/biocode
2021-07-12T21:24:40,281   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T21:24:40,284   copying biocode/gff.py -> build/lib/biocode
2021-07-12T21:24:40,287   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T21:24:40,290   copying biocode/things.py -> build/lib/biocode
2021-07-12T21:24:40,293   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T21:24:40,296   copying biocode/utils.py -> build/lib/biocode
2021-07-12T21:24:40,298   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T21:24:40,300   running egg_info
2021-07-12T21:24:40,314   writing biocode.egg-info/PKG-INFO
2021-07-12T21:24:40,315   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T21:24:40,318   writing requirements to biocode.egg-info/requires.txt
2021-07-12T21:24:40,319   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T21:24:40,342   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T21:24:40,346   reading manifest template 'MANIFEST.in'
2021-07-12T21:24:40,346   warning: no files found matching 'biocode/README.rst'
2021-07-12T21:24:40,347   adding license file 'LICENSE'
2021-07-12T21:24:40,354   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T21:24:40,358   creating build/lib/biocode/data
2021-07-12T21:24:40,359   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T21:24:40,364   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T21:24:40,366   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T21:24:40,369   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T21:24:40,373   running build_scripts
2021-07-12T21:24:40,374   creating build/scripts-3.9
2021-07-12T21:24:40,375   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,378   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T21:24:40,379   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T21:24:40,381   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,384   copying and adjusting bin/merge_predicted_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,385   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T21:24:40,388   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T21:24:40,390   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T21:24:40,392   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T21:24:40,395   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T21:24:40,396   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T21:24:40,398   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T21:24:40,401   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T21:24:40,403   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T21:24:40,404   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T21:24:40,407   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T21:24:40,409   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,411   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T21:24:40,413   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T21:24:40,415   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T21:24:40,417   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T21:24:40,419   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T21:24:40,422   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
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2021-07-12T21:24:40,426   copying and adjusting bin/calculate_query_coverage_by_blast.py -> build/scripts-3.9
2021-07-12T21:24:40,428   copying and adjusting bin/convert_gff3_to_ncbi_tbl.py -> build/scripts-3.9
2021-07-12T21:24:40,430   copying and adjusting bin/filter_gff3_by_id_list.py -> build/scripts-3.9
2021-07-12T21:24:40,432   copying and adjusting bin/split_fasta_into_even_files.py -> build/scripts-3.9
2021-07-12T21:24:40,433   copying and adjusting bin/replace_gff_type_column_value.py -> build/scripts-3.9
2021-07-12T21:24:40,435   copying and adjusting bin/merge_bam_files.py -> build/scripts-3.9
2021-07-12T21:24:40,437   copying and adjusting bin/prepend_to_fasta_header.py -> build/scripts-3.9
2021-07-12T21:24:40,439   copying and adjusting bin/add_polypeptide_to_gff3_gene_models.py -> build/scripts-3.9
2021-07-12T21:24:40,441   copying and adjusting bin/check_gff_for_internal_stops.py -> build/scripts-3.9
2021-07-12T21:24:40,443   copying and adjusting bin/remove_orphaned_features.py -> build/scripts-3.9
2021-07-12T21:24:40,445   copying and adjusting bin/convert_gff3_to_gbk.py -> build/scripts-3.9
2021-07-12T21:24:40,447   copying and adjusting bin/report_or_replace_nonstandard_residues.py -> build/scripts-3.9
2021-07-12T21:24:40,449   copying and adjusting bin/make_go_slim_index.py -> build/scripts-3.9
2021-07-12T21:24:40,452   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
2021-07-12T21:24:40,454   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.9
2021-07-12T21:24:40,456   copying and adjusting bin/randomly_subsample_fastq.py -> build/scripts-3.9
2021-07-12T21:24:40,458   copying and adjusting bin/fasta_size_distribution_plot.py -> build/scripts-3.9
2021-07-12T21:24:40,461   copying and adjusting bin/remove_duplicate_sequences.py -> build/scripts-3.9
2021-07-12T21:24:40,463   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,465   copying and adjusting bin/filter_fasta_by_header_regex.py -> build/scripts-3.9
2021-07-12T21:24:40,467   copying and adjusting bin/split_molecules_on_gaps.py -> build/scripts-3.9
2021-07-12T21:24:40,468   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,470   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
2021-07-12T21:24:40,473   copying and adjusting bin/append_to_column_9_value.py -> build/scripts-3.9
2021-07-12T21:24:40,474   copying and adjusting bin/split_interleaved_sequence_file.py -> build/scripts-3.9
2021-07-12T21:24:40,477   copying and adjusting bin/filter_fasta_by_type.py -> build/scripts-3.9
2021-07-12T21:24:40,478   copying and adjusting bin/convert_augustus_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,481   copying and adjusting bin/uniprot_sprot_to_sqlite3.py -> build/scripts-3.9
2021-07-12T21:24:40,483   copying and adjusting bin/hmmlib_to_sqlite3.py -> build/scripts-3.9
2021-07-12T21:24:40,486   copying and adjusting bin/update_selected_column9_values.py -> build/scripts-3.9
2021-07-12T21:24:40,488   copying and adjusting bin/get_mpilup_from_id_list.py -> build/scripts-3.9
2021-07-12T21:24:40,490   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,491   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
2021-07-12T21:24:40,493   copying and adjusting bin/convert_genbank_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,495   copying and adjusting bin/validate_uniref_member_characterization.py -> build/scripts-3.9
2021-07-12T21:24:40,498   copying and adjusting bin/compare_gene_structures.py -> build/scripts-3.9
2021-07-12T21:24:40,501   copying and adjusting bin/uniref_to_sqlite3.py -> build/scripts-3.9
2021-07-12T21:24:40,503   copying and adjusting bin/extract_fasta_regions.py -> build/scripts-3.9
2021-07-12T21:24:40,505   copying and adjusting bin/reverse_misordered_cds_coords.py -> build/scripts-3.9
2021-07-12T21:24:40,507   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,509   copying and adjusting bin/interleave_fasta.py -> build/scripts-3.9
2021-07-12T21:24:40,511   copying and adjusting bin/make_go_slim.py -> build/scripts-3.9
2021-07-12T21:24:40,513   copying and adjusting bin/report_basic_gff_model_agreement.py -> build/scripts-3.9
2021-07-12T21:24:40,515   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
2021-07-12T21:24:40,517   copying and adjusting bin/fastq_simple_stats.py -> build/scripts-3.9
2021-07-12T21:24:40,519   copying and adjusting bin/eggnog_to_sqlite3.py -> build/scripts-3.9
2021-07-12T21:24:40,521   copying and adjusting bin/create_taxonomy_db.py -> build/scripts-3.9
2021-07-12T21:24:40,523   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
2021-07-12T21:24:40,525   copying and adjusting bin/tigrfam_info_to_sqlite3.py -> build/scripts-3.9
2021-07-12T21:24:40,527   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T21:24:40,530   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T21:24:40,531   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T21:24:40,533   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T21:24:40,535   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T21:24:40,537   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T21:24:40,539   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T21:24:40,541   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T21:24:40,543   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T21:24:40,545   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T21:24:40,547   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T21:24:40,548   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T21:24:40,550   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T21:24:40,552   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T21:24:40,552   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T21:24:40,552   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
2021-07-12T21:24:40,553   changing mode of build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py from 644 to 755
2021-07-12T21:24:40,553   changing mode of build/scripts-3.9/merge_predicted_gff3.py from 644 to 755
2021-07-12T21:24:40,553   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T21:24:40,554   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T21:24:40,554   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T21:24:40,554   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
2021-07-12T21:24:40,555   changing mode of build/scripts-3.9/remove_duplicate_features.py from 644 to 755
2021-07-12T21:24:40,555   changing mode of build/scripts-3.9/merge_masked_fasta_files.py from 644 to 755
2021-07-12T21:24:40,556   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T21:24:40,556   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T21:24:40,556   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
2021-07-12T21:24:40,557   changing mode of build/scripts-3.9/filter_fastq_by_N_content.py from 644 to 755
2021-07-12T21:24:40,557   changing mode of build/scripts-3.9/select_training_and_evaluation_transcripts.py from 644 to 755
2021-07-12T21:24:40,557   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T21:24:40,557   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T21:24:40,558   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
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2021-07-12T21:24:40,558   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T21:24:40,559   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T21:24:40,559   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T21:24:40,559   changing mode of build/scripts-3.9/filter_uniref_by_repid.py from 644 to 755
2021-07-12T21:24:40,559   changing mode of build/scripts-3.9/calculate_query_coverage_by_blast.py from 644 to 755
2021-07-12T21:24:40,560   changing mode of build/scripts-3.9/convert_gff3_to_ncbi_tbl.py from 644 to 755
2021-07-12T21:24:40,560   changing mode of build/scripts-3.9/filter_gff3_by_id_list.py from 644 to 755
2021-07-12T21:24:40,561   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T21:24:40,561   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T21:24:40,561   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T21:24:40,562   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T21:24:40,562   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T21:24:40,562   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T21:24:40,563   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T21:24:40,563   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
2021-07-12T21:24:40,563   changing mode of build/scripts-3.9/report_or_replace_nonstandard_residues.py from 644 to 755
2021-07-12T21:24:40,563   changing mode of build/scripts-3.9/make_go_slim_index.py from 644 to 755
2021-07-12T21:24:40,564   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T21:24:40,564   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T21:24:40,564   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T21:24:40,565   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T21:24:40,565   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T21:24:40,565   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T21:24:40,566   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T21:24:40,566   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T21:24:40,566   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T21:24:40,567   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T21:24:40,567   changing mode of build/scripts-3.9/append_to_column_9_value.py from 644 to 755
2021-07-12T21:24:40,567   changing mode of build/scripts-3.9/split_interleaved_sequence_file.py from 644 to 755
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2021-07-12T21:24:40,568   changing mode of build/scripts-3.9/uniprot_sprot_to_sqlite3.py from 644 to 755
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2021-07-12T21:24:40,569   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T21:24:40,570   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T21:24:40,570   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T21:24:40,570   changing mode of build/scripts-3.9/validate_uniref_member_characterization.py from 644 to 755
2021-07-12T21:24:40,571   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T21:24:40,571   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T21:24:40,571   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T21:24:40,571   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T21:24:40,572   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T21:24:40,572   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
2021-07-12T21:24:40,572   changing mode of build/scripts-3.9/make_go_slim.py from 644 to 755
2021-07-12T21:24:40,572   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
2021-07-12T21:24:40,573   changing mode of build/scripts-3.9/make_cufflinks_ids_unique.py from 644 to 755
2021-07-12T21:24:40,573   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
2021-07-12T21:24:40,573   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
2021-07-12T21:24:40,574   changing mode of build/scripts-3.9/create_taxonomy_db.py from 644 to 755
2021-07-12T21:24:40,574   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
2021-07-12T21:24:40,574   changing mode of build/scripts-3.9/tigrfam_info_to_sqlite3.py from 644 to 755
2021-07-12T21:24:40,575   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
2021-07-12T21:24:40,575   changing mode of build/scripts-3.9/reformat_fasta_residue_lengths.py from 644 to 755
2021-07-12T21:24:40,575   changing mode of build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py from 644 to 755
2021-07-12T21:24:40,575   changing mode of build/scripts-3.9/create_rsem_html_table.py from 644 to 755
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2021-07-12T21:24:40,576   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
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2021-07-12T21:24:40,577   changing mode of build/scripts-3.9/write_fasta_from_gff.py from 644 to 755
2021-07-12T21:24:40,577   changing mode of build/scripts-3.9/convert_pasa_gff_to_models.py from 644 to 755
2021-07-12T21:24:40,578   changing mode of build/scripts-3.9/set_source_column.py from 644 to 755
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2021-07-12T21:24:40,585   installing to build/bdist.linux-armv7l/wheel
2021-07-12T21:24:40,586   running install
2021-07-12T21:24:40,587   running install_lib
2021-07-12T21:24:40,591   creating build/bdist.linux-armv7l
2021-07-12T21:24:40,591   creating build/bdist.linux-armv7l/wheel
2021-07-12T21:24:40,594   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,595   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,599   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,602   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,605   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,609   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,612   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,616   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:24:40,617   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:24:40,621   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:24:40,625   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:24:40,627   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:24:40,629   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:24:40,630   running install_egg_info
2021-07-12T21:24:40,639   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.5.2-py3.9.egg-info
2021-07-12T21:24:40,654   running install_scripts
2021-07-12T21:24:40,686   creating build/bdist.linux-armv7l/wheel/biocode-0.5.2.data
2021-07-12T21:24:40,686   creating build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,687   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,691   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,693   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,696   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,698   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,701   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,703   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,706   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,708   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,710   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,712   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,715   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,717   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,719   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,722   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,724   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,727   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,729   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,732   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,734   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,736   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,739   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,741   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,744   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,746   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,749   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,751   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,754   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,756   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,758   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,761   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,764   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,767   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,770   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,772   copying build/scripts-3.9/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,775   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,777   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,780   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,783   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,785   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,787   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,789   copying build/scripts-3.9/validate_uniref_member_characterization.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,792   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,795   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,797   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,800   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,802   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,805   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,807   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,809   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,812   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,814   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,817   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,819   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,821   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,824   copying build/scripts-3.9/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,826   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,829   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,831   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,834   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,837   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,839   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,842   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,844   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,847   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,850   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,854   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,856   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,859   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,863   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,865   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,868   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,871   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,873   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,876   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,879   copying build/scripts-3.9/merge_predicted_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,881   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,884   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,886   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,888   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,891   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,893   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,896   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,898   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,901   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,903   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts
2021-07-12T21:24:40,905   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/validate_fasta.py to 755
2021-07-12T21:24:40,905   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/write_fasta_from_gff.py to 755
2021-07-12T21:24:40,906   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/uniref_to_sqlite3.py to 755
2021-07-12T21:24:40,906   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/make_cufflinks_ids_unique.py to 755
2021-07-12T21:24:40,906   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/filter_fastq_by_N_content.py to 755
2021-07-12T21:24:40,907   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/replace_homopolymeric_repeats_with_Ns.py to 755
2021-07-12T21:24:40,907   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/filter_uniref_by_taxonomy.py to 755
2021-07-12T21:24:40,908   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/subsample_fasta.py to 755
2021-07-12T21:24:40,908   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/split_isoforms_into_individual_genes.py to 755
2021-07-12T21:24:40,908   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/create_rsem_html_table.py to 755
2021-07-12T21:24:40,908   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/fasta_size_distribution_plot.py to 755
2021-07-12T21:24:40,909   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/hmmlib_to_sqlite3.py to 755
2021-07-12T21:24:40,909   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/filter_gff3_by_id_list.py to 755
2021-07-12T21:24:40,909   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/correct_gff3_CDS_phase_column.py to 755
2021-07-12T21:24:40,910   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/update_selected_column9_values.py to 755
2021-07-12T21:24:40,910   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T21:24:40,910   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/check_gff_for_internal_stops.py to 755
2021-07-12T21:24:40,911   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_aat_btab_to_gff3.py to 755
2021-07-12T21:24:40,911   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/prepend_to_fasta_header.py to 755
2021-07-12T21:24:40,911   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/remove_duplicate_features.py to 755
2021-07-12T21:24:40,912   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_genbank_to_gff3.py to 755
2021-07-12T21:24:40,912   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/split_molecules_on_gaps.py to 755
2021-07-12T21:24:40,912   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T21:24:40,913   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/detect_inverted_repeats.py to 755
2021-07-12T21:24:40,913   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_fasta_contigs_to_gff3.py to 755
2021-07-12T21:24:40,913   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_prodigal_to_gff3.py to 755
2021-07-12T21:24:40,914   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/compare_gene_structures.py to 755
2021-07-12T21:24:40,914   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/merge_masked_fasta_files.py to 755
2021-07-12T21:24:40,914   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/set_source_column.py to 755
2021-07-12T21:24:40,914   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/create_taxonomy_db.py to 755
2021-07-12T21:24:40,915   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/uniprot_sprot_to_sqlite3.py to 755
2021-07-12T21:24:40,915   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/extend_genes_to_stops.py to 755
2021-07-12T21:24:40,915   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/mark_partial_genes.py to 755
2021-07-12T21:24:40,916   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/check_for_embedded_fasta_headers.py to 755
2021-07-12T21:24:40,916   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/make_go_slim.py to 755
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2021-07-12T21:24:40,917   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/reformat_fasta_residue_lengths.py to 755
2021-07-12T21:24:40,917   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_gff3_to_gene_association_format.py to 755
2021-07-12T21:24:40,918   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/append_to_fasta_header.py to 755
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2021-07-12T21:24:40,918   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/eggnog_to_sqlite3.py to 755
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2021-07-12T21:24:40,919   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/create_taxonomic_profile_from_blast.py to 755
2021-07-12T21:24:40,919   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/append_to_column_9_value.py to 755
2021-07-12T21:24:40,919   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_fastq_to_fasta.py to 755
2021-07-12T21:24:40,920   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/split_interleaved_sequence_file.py to 755
2021-07-12T21:24:40,920   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_cegma_gff_to_gff3.py to 755
2021-07-12T21:24:40,920   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/interleave_fastq.py to 755
2021-07-12T21:24:40,921   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/report_or_replace_nonstandard_residues.py to 755
2021-07-12T21:24:40,921   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_augustus_to_gff3.py to 755
2021-07-12T21:24:40,921   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_scipio_gff_to_gff3.py to 755
2021-07-12T21:24:40,922   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/fastq_simple_stats.py to 755
2021-07-12T21:24:40,922   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/fasta_base_content.py to 755
2021-07-12T21:24:40,922   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/append_to_fastq_read_header.py to 755
2021-07-12T21:24:40,923   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/replace_gff_type_column_value.py to 755
2021-07-12T21:24:40,923   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/filter_uniref_by_repid.py to 755
2021-07-12T21:24:40,923   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/add_gff3_locus_tags.py to 755
2021-07-12T21:24:40,924   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/biothings_coordinate_comparisons.py to 755
2021-07-12T21:24:40,924   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/remove_orphaned_features.py to 755
2021-07-12T21:24:40,924   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/randomly_subsample_fastq.py to 755
2021-07-12T21:24:40,924   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/interleave_fasta.py to 755
2021-07-12T21:24:40,925   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755
2021-07-12T21:24:40,925   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/remove_masked_gene_models.py to 755
2021-07-12T21:24:40,925   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T21:24:40,926   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_pasa_gff_to_models.py to 755
2021-07-12T21:24:40,926   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_cufflinks_gtf_to_gff3.py to 755
2021-07-12T21:24:40,926   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/calculate_query_coverage_by_blast.py to 755
2021-07-12T21:24:40,926   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/merge_bam_files.py to 755
2021-07-12T21:24:40,927   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T21:24:40,927   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/report_basic_gff_model_agreement.py to 755
2021-07-12T21:24:40,927   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T21:24:40,928   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/get_mpilup_from_id_list.py to 755
2021-07-12T21:24:40,928   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T21:24:40,928   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
2021-07-12T21:24:40,929   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/make_go_slim_index.py to 755
2021-07-12T21:24:40,929   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/merge_predicted_gff3.py to 755
2021-07-12T21:24:40,929   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/convert_gff3_to_ncbi_tbl.py to 755
2021-07-12T21:24:40,929   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T21:24:40,930   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T21:24:40,930   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T21:24:40,930   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755
2021-07-12T21:24:40,931   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T21:24:40,931   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/tigrfam_info_to_sqlite3.py to 755
2021-07-12T21:24:40,932   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/report_coverage_gaps.py to 755
2021-07-12T21:24:40,932   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/filter_fasta_by_header_regex.py to 755
2021-07-12T21:24:40,932   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.2.data/scripts/report_gff3_statistics.py to 755
2021-07-12T21:24:40,953   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T21:24:40,958   creating build/bdist.linux-armv7l/wheel/biocode-0.5.2.dist-info/WHEEL
2021-07-12T21:24:40,961   creating '/tmp/pip-wheel-trg_6fyc/biocode-0.5.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T21:24:40,963   adding 'biocode/__init__.py'
2021-07-12T21:24:40,967   adding 'biocode/annotation.py'
2021-07-12T21:24:40,969   adding 'biocode/genbank.py'
2021-07-12T21:24:40,973   adding 'biocode/gff.py'
2021-07-12T21:24:40,975   adding 'biocode/tbl.py'
2021-07-12T21:24:40,983   adding 'biocode/things.py'
2021-07-12T21:24:40,985   adding 'biocode/utils.py'
2021-07-12T21:24:40,991   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T21:24:40,993   adding 'biocode/data/__init__.py'
2021-07-12T21:24:40,994   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T21:24:40,996   adding 'biocode/data/rsem_html_table.template'
2021-07-12T21:24:41,001   adding 'biocode-0.5.2.data/scripts/add_gff3_locus_tags.py'
2021-07-12T21:24:41,003   adding 'biocode-0.5.2.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T21:24:41,005   adding 'biocode-0.5.2.data/scripts/append_to_column_9_value.py'
2021-07-12T21:24:41,006   adding 'biocode-0.5.2.data/scripts/append_to_fasta_header.py'
2021-07-12T21:24:41,008   adding 'biocode-0.5.2.data/scripts/append_to_fastq_read_header.py'
2021-07-12T21:24:41,009   adding 'biocode-0.5.2.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T21:24:41,011   adding 'biocode-0.5.2.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T21:24:41,012   adding 'biocode-0.5.2.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T21:24:41,014   adding 'biocode-0.5.2.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T21:24:41,017   adding 'biocode-0.5.2.data/scripts/compare_gene_structures.py'
2021-07-12T21:24:41,020   adding 'biocode-0.5.2.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T21:24:41,022   adding 'biocode-0.5.2.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T21:24:41,024   adding 'biocode-0.5.2.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T21:24:41,026   adding 'biocode-0.5.2.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T21:24:41,028   adding 'biocode-0.5.2.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T21:24:41,030   adding 'biocode-0.5.2.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T21:24:41,031   adding 'biocode-0.5.2.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T21:24:41,033   adding 'biocode-0.5.2.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T21:24:41,035   adding 'biocode-0.5.2.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T21:24:41,037   adding 'biocode-0.5.2.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T21:24:41,038   adding 'biocode-0.5.2.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T21:24:41,040   adding 'biocode-0.5.2.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T21:24:41,042   adding 'biocode-0.5.2.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T21:24:41,044   adding 'biocode-0.5.2.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T21:24:41,045   adding 'biocode-0.5.2.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T21:24:41,047   adding 'biocode-0.5.2.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T21:24:41,049   adding 'biocode-0.5.2.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T21:24:41,051   adding 'biocode-0.5.2.data/scripts/create_rsem_html_table.py'
2021-07-12T21:24:41,053   adding 'biocode-0.5.2.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T21:24:41,055   adding 'biocode-0.5.2.data/scripts/create_taxonomy_db.py'
2021-07-12T21:24:41,056   adding 'biocode-0.5.2.data/scripts/detect_inverted_repeats.py'
2021-07-12T21:24:41,058   adding 'biocode-0.5.2.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T21:24:41,060   adding 'biocode-0.5.2.data/scripts/extend_genes_to_stops.py'
2021-07-12T21:24:41,062   adding 'biocode-0.5.2.data/scripts/extract_fasta_regions.py'
2021-07-12T21:24:41,063   adding 'biocode-0.5.2.data/scripts/fasta_base_content.py'
2021-07-12T21:24:41,065   adding 'biocode-0.5.2.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T21:24:41,066   adding 'biocode-0.5.2.data/scripts/fastq_simple_stats.py'
2021-07-12T21:24:41,067   adding 'biocode-0.5.2.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T21:24:41,069   adding 'biocode-0.5.2.data/scripts/filter_fasta_by_type.py'
2021-07-12T21:24:41,071   adding 'biocode-0.5.2.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T21:24:41,072   adding 'biocode-0.5.2.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T21:24:41,074   adding 'biocode-0.5.2.data/scripts/filter_uniref_by_repid.py'
2021-07-12T21:24:41,075   adding 'biocode-0.5.2.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T21:24:41,077   adding 'biocode-0.5.2.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T21:24:41,079   adding 'biocode-0.5.2.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T21:24:41,080   adding 'biocode-0.5.2.data/scripts/interleave_fasta.py'
2021-07-12T21:24:41,082   adding 'biocode-0.5.2.data/scripts/interleave_fastq.py'
2021-07-12T21:24:41,083   adding 'biocode-0.5.2.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T21:24:41,085   adding 'biocode-0.5.2.data/scripts/make_go_slim.py'
2021-07-12T21:24:41,087   adding 'biocode-0.5.2.data/scripts/make_go_slim_index.py'
2021-07-12T21:24:41,089   adding 'biocode-0.5.2.data/scripts/mark_partial_genes.py'
2021-07-12T21:24:41,091   adding 'biocode-0.5.2.data/scripts/merge_bam_files.py'
2021-07-12T21:24:41,092   adding 'biocode-0.5.2.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T21:24:41,093   adding 'biocode-0.5.2.data/scripts/merge_masked_fasta_files.py'
2021-07-12T21:24:41,095   adding 'biocode-0.5.2.data/scripts/merge_predicted_gff3.py'
2021-07-12T21:24:41,097   adding 'biocode-0.5.2.data/scripts/prepend_to_fasta_header.py'
2021-07-12T21:24:41,099   adding 'biocode-0.5.2.data/scripts/randomly_subsample_fastq.py'
2021-07-12T21:24:41,100   adding 'biocode-0.5.2.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T21:24:41,102   adding 'biocode-0.5.2.data/scripts/remove_duplicate_features.py'
2021-07-12T21:24:41,103   adding 'biocode-0.5.2.data/scripts/remove_duplicate_sequences.py'
2021-07-12T21:24:41,105   adding 'biocode-0.5.2.data/scripts/remove_masked_gene_models.py'
2021-07-12T21:24:41,106   adding 'biocode-0.5.2.data/scripts/remove_orphaned_features.py'
2021-07-12T21:24:41,108   adding 'biocode-0.5.2.data/scripts/reorient_sequences_by_id.py'
2021-07-12T21:24:41,109   adding 'biocode-0.5.2.data/scripts/replace_gff_type_column_value.py'
2021-07-12T21:24:41,111   adding 'biocode-0.5.2.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T21:24:41,112   adding 'biocode-0.5.2.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T21:24:41,114   adding 'biocode-0.5.2.data/scripts/report_coverage_gaps.py'
2021-07-12T21:24:41,116   adding 'biocode-0.5.2.data/scripts/report_gff3_statistics.py'
2021-07-12T21:24:41,118   adding 'biocode-0.5.2.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T21:24:41,119   adding 'biocode-0.5.2.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T21:24:41,121   adding 'biocode-0.5.2.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T21:24:41,123   adding 'biocode-0.5.2.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T21:24:41,124   adding 'biocode-0.5.2.data/scripts/set_source_column.py'
2021-07-12T21:24:41,126   adding 'biocode-0.5.2.data/scripts/split_fasta_into_even_files.py'
2021-07-12T21:24:41,127   adding 'biocode-0.5.2.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T21:24:41,129   adding 'biocode-0.5.2.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T21:24:41,130   adding 'biocode-0.5.2.data/scripts/split_molecules_on_gaps.py'
2021-07-12T21:24:41,132   adding 'biocode-0.5.2.data/scripts/subsample_fasta.py'
2021-07-12T21:24:41,133   adding 'biocode-0.5.2.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T21:24:41,135   adding 'biocode-0.5.2.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T21:24:41,137   adding 'biocode-0.5.2.data/scripts/uniref_to_sqlite3.py'
2021-07-12T21:24:41,139   adding 'biocode-0.5.2.data/scripts/update_selected_column9_values.py'
2021-07-12T21:24:41,141   adding 'biocode-0.5.2.data/scripts/validate_fasta.py'
2021-07-12T21:24:41,142   adding 'biocode-0.5.2.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T21:24:41,144   adding 'biocode-0.5.2.data/scripts/validate_uniref_member_characterization.py'
2021-07-12T21:24:41,146   adding 'biocode-0.5.2.data/scripts/write_fasta_from_gff.py'
2021-07-12T21:24:41,148   adding 'biocode-0.5.2.dist-info/LICENSE'
2021-07-12T21:24:41,149   adding 'biocode-0.5.2.dist-info/METADATA'
2021-07-12T21:24:41,150   adding 'biocode-0.5.2.dist-info/WHEEL'
2021-07-12T21:24:41,152   adding 'biocode-0.5.2.dist-info/top_level.txt'
2021-07-12T21:24:41,154   adding 'biocode-0.5.2.dist-info/RECORD'
2021-07-12T21:24:41,160   removing build/bdist.linux-armv7l/wheel
2021-07-12T21:24:41,287   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T21:24:41,292   Created wheel for biocode: filename=biocode-0.5.2-py3-none-any.whl size=218427 sha256=87ef8c0b656cb96cbddffb44f82a3f7d40334636f9919dd335b7aac6d872331e
2021-07-12T21:24:41,293   Stored in directory: /tmp/pip-ephem-wheel-cache-uoje1hge/wheels/ea/35/21/cc45fab80ccc12d82d9eeeab8d61a398f615a167bf58c952bb
2021-07-12T21:24:41,305 Successfully built biocode
2021-07-12T21:24:41,316 Removed build tracker: '/tmp/pip-req-tracker-_98n5hlh'