2021-07-12T21:29:12,742 Created temporary directory: /tmp/pip-ephem-wheel-cache-w4a85kid
2021-07-12T21:29:12,745 Created temporary directory: /tmp/pip-req-tracker-bept2bl2
2021-07-12T21:29:12,746 Initialized build tracking at /tmp/pip-req-tracker-bept2bl2
2021-07-12T21:29:12,746 Created build tracker: /tmp/pip-req-tracker-bept2bl2
2021-07-12T21:29:12,746 Entered build tracker: /tmp/pip-req-tracker-bept2bl2
2021-07-12T21:29:12,747 Created temporary directory: /tmp/pip-wheel-bmr2vxqx
2021-07-12T21:29:12,776 1 location(s) to search for versions of biocode:
2021-07-12T21:29:12,776 * https://pypi.org/simple/biocode/
2021-07-12T21:29:12,777 Fetching project page and analyzing links: https://pypi.org/simple/biocode/
2021-07-12T21:29:12,777 Getting page https://pypi.org/simple/biocode/
2021-07-12T21:29:12,779 Found index url https://pypi.org/simple
2021-07-12T21:29:12,878   Found link https://files.pythonhosted.org/packages/e1/6d/8b417c8c08f02c960801f360bc8b38927a4c14dfee8cb1418978bdfc4946/biocode-0.1.0.tar.gz#sha256=98fb4d531f0a3d940f3f30a71c0c9a59e89063c30eefcbaa3032ed4c8e8eb7ad (from https://pypi.org/simple/biocode/), version: 0.1.0
2021-07-12T21:29:12,879   Found link https://files.pythonhosted.org/packages/96/e5/314879e7d54bee7e0ed6db1fc358d193ae2d118e4825a99d14f3269a9322/biocode-0.1.1.tar.gz#sha256=76bdb70852fc5e7a83f19de8e66074de97bace873dea6a3014b49f4305736fb0 (from https://pypi.org/simple/biocode/), version: 0.1.1
2021-07-12T21:29:12,879   Found link https://files.pythonhosted.org/packages/4e/94/c999970e61e13f3082eae7989bc32d745ef7d846824252dd9a3c09cfd19c/biocode-0.1.2.tar.gz#sha256=d72e37b2f0cefc2081b0888b603d39cf572382b5d966586390e02cb09b708cc9 (from https://pypi.org/simple/biocode/), version: 0.1.2
2021-07-12T21:29:12,880   Found link https://files.pythonhosted.org/packages/a5/2c/85a52abaf0192795d5fbc56842c58c349bc6b58c568b4b913b8fdf591617/biocode-0.1.3.tar.gz#sha256=ec904f8ddd1458821e75e8d2fffa08b2a7dee98c02bec8e5463f55997dda2fb1 (from https://pypi.org/simple/biocode/), version: 0.1.3
2021-07-12T21:29:12,880   Found link https://files.pythonhosted.org/packages/a5/06/562772ff9d04bcfcde87ed1ce76026eaf8f6b15cf7336fc6334bad04db00/biocode-0.1.4.tar.gz#sha256=603bf7f95b963b13a70cddb848e41953897e6ec38bbd9afed918667881190745 (from https://pypi.org/simple/biocode/), version: 0.1.4
2021-07-12T21:29:12,880   Found link https://files.pythonhosted.org/packages/27/c6/cdb7baa2821259f68c059a9e7385d613b817d90c00c8e727df7d3da23d2e/biocode-0.1.5.tar.gz#sha256=a9d3a7c9214b2625e44a0299c132e349279cd6b355c4ad30992aacdb27f123d6 (from https://pypi.org/simple/biocode/), version: 0.1.5
2021-07-12T21:29:12,880   Found link https://files.pythonhosted.org/packages/5d/ff/bda52fd80d3696809f96b27e1df816809c610a91587199fbb5611a82ff48/biocode-0.2.0.tar.gz#sha256=9b0e58ba93cb841d9f214c010d46e40c2c09a941a3f43874b58564abe357ccfd (from https://pypi.org/simple/biocode/), version: 0.2.0
2021-07-12T21:29:12,881   Found link https://files.pythonhosted.org/packages/4b/d4/61d22deda78a8fb9b998ac1a7e7fee95eb3e84adcb26ab1705fda8235d31/biocode-0.3.0.tar.gz#sha256=8d210b1a7ae16d60964df9a92d0e92eda846e7fca2c01f6add5105d6f26691d3 (from https://pypi.org/simple/biocode/), version: 0.3.0
2021-07-12T21:29:12,881   Found link https://files.pythonhosted.org/packages/9e/04/4a879cb84c7d4d8a11b9812e25668e5f1d4ef5e3cea429f7cc8202a0021b/biocode-0.3.1.tar.gz#sha256=aac38e473e1f4712d85db957f8b92caf980522c748d438ca3ef2597cab586f20 (from https://pypi.org/simple/biocode/), version: 0.3.1
2021-07-12T21:29:12,881   Found link https://files.pythonhosted.org/packages/72/af/9de76d7a8ae1cc6912488e33e53df8145aac259d36ddd42fc3dc803ea473/biocode-0.4.0.tar.gz#sha256=7e5c9d20368f8a7fdd8446e56b9d325a2e7d890cd5c76cc1f90740665a3886d8 (from https://pypi.org/simple/biocode/), version: 0.4.0
2021-07-12T21:29:12,882   Found link https://files.pythonhosted.org/packages/c7/93/31d3a353be167da9500e2bdff93451dba1a6a134e425767d426e297a0853/biocode-0.4.1.tar.gz#sha256=e5e17c522d8372246038b2d2b77ce112a38c9eb2770f3fba28bcfda4e2bfed10 (from https://pypi.org/simple/biocode/), version: 0.4.1
2021-07-12T21:29:12,882   Found link https://files.pythonhosted.org/packages/7a/24/cae23280630c49008e96590c77494485e47bbcf488f5c4b4e03ecc7b1e29/biocode-0.4.2.tar.gz#sha256=d49e59cc384507d62a7e379c6f21a6598262677ca9d50f98e47503e495a901ea (from https://pypi.org/simple/biocode/), version: 0.4.2
2021-07-12T21:29:12,882   Found link https://files.pythonhosted.org/packages/7f/5a/0d11038818cc78cee863d20da8a16a9907c20be8bfa8334ebabec4cb37e4/biocode-0.4.4.tar.gz#sha256=078dc61603ae5fe6944f271f8625f06779c884b9428154315c1cbc1dcd7c606f (from https://pypi.org/simple/biocode/), version: 0.4.4
2021-07-12T21:29:12,882   Found link https://files.pythonhosted.org/packages/43/8e/107a8d911b7af9db94a561f6740801f62b69a60cb8857fc6642268f0d99d/biocode-0.4.5.tar.gz#sha256=bca0bac61eb6ba3da8df7d2826edd314e3351df73b272df4db17e83b3881d5ea (from https://pypi.org/simple/biocode/), version: 0.4.5
2021-07-12T21:29:12,883   Found link https://files.pythonhosted.org/packages/02/e7/dc62a42fcfcb2288f397789f6bc83fd40a815d495edba4fa79e14759935c/biocode-0.4.7.tar.gz#sha256=8cfa6c8edbd1a65b03178d12f1941cb159d210a534447226846cc8ae4ad47148 (from https://pypi.org/simple/biocode/), version: 0.4.7
2021-07-12T21:29:12,883   Found link https://files.pythonhosted.org/packages/f2/fc/483f6dad337423c04dc8a1b2756c3e5326e9381648e5560eb602a4f83413/biocode-0.5.0.tar.gz#sha256=a96f0e2c3bde3e42f82590de9ce1be0e8782b50c9a58296bc3e872161fb3a3a3 (from https://pypi.org/simple/biocode/), version: 0.5.0
2021-07-12T21:29:12,883   Found link https://files.pythonhosted.org/packages/5c/b7/035e01334320dd66ac8c65be4baa910e8cb16215c563d7b65bfdfd5b56d6/biocode-0.5.1.tar.gz#sha256=ca80071c7e495380a875714ac7cf975dc20389ab8e36f72971a59f6e5a5ac83e (from https://pypi.org/simple/biocode/), version: 0.5.1
2021-07-12T21:29:12,883   Found link https://files.pythonhosted.org/packages/95/f7/e7ac262a9e90ac52d889c0a832aa8276b95fb6c23d0c65bf32fc2ccc1c7a/biocode-0.5.2.tar.gz#sha256=53cfdf987543f82bca9ccd37fa6aade4f257601f18d79b9ebd4dd924d55e5d01 (from https://pypi.org/simple/biocode/), version: 0.5.2
2021-07-12T21:29:12,884   Found link https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 (from https://pypi.org/simple/biocode/), version: 0.5.3
2021-07-12T21:29:12,884   Found link https://files.pythonhosted.org/packages/b3/e7/e8b3bd627d57954933c9c5a79bbdf28ad93073cc0792c61f71e3777f44d8/biocode-0.6.0.tar.gz#sha256=194619f6945592ac8795cebb80d2734b5e30ad85dc4cc5f5cf3365f9fc13491e (from https://pypi.org/simple/biocode/), version: 0.6.0
2021-07-12T21:29:12,884   Found link https://files.pythonhosted.org/packages/dd/d7/73e00082816c193207ea58420b38ac0a4041d345b8617f0d15501367c080/biocode-0.7.0.tar.gz#sha256=6f1f1ddb5e72687c18ae968414bb9c5b9003869b1bb5d8b69acb4f863bccffe8 (from https://pypi.org/simple/biocode/), version: 0.7.0
2021-07-12T21:29:12,885   Found link https://files.pythonhosted.org/packages/bb/7a/c073ca257a937286fec9e225190fa55c66a46132708e8dfa13569ef0cc37/biocode-0.7.1.tar.gz#sha256=98583da45aa2fb3258f676fd02cbd421b5dbf38ecac9f062a44157222671bb8b (from https://pypi.org/simple/biocode/), version: 0.7.1
2021-07-12T21:29:12,885   Found link https://files.pythonhosted.org/packages/a3/b5/0a5b44de28177113d5bbc0a8b510ea6e9acf82184b1e1ad5303357d1caa5/biocode-0.8.0.tar.gz#sha256=9ac96ea8d68d3770c815e91201080ef13485e550f42f2c955fb21df57384952b (from https://pypi.org/simple/biocode/), version: 0.8.0
2021-07-12T21:29:12,885   Found link https://files.pythonhosted.org/packages/ac/58/b16f07e13b99403a0069b7782dc963882f634b6863d6e4bba85d327bd634/biocode-0.9.0.tar.gz#sha256=3e8ef89dc0a699ed4f735563009a5e329c8101c60e23c21135ebb6ef9b44d3b8 (from https://pypi.org/simple/biocode/), version: 0.9.0
2021-07-12T21:29:12,886   Found link https://files.pythonhosted.org/packages/60/4d/1ede29387210a62ff0c6ccbb1c467e94890fb1a5802a2a3b3d37df3997cb/biocode-0.10.0.tar.gz#sha256=ab48e0ea92f52c7fe48c6c947d4d5aa43437f16cd42a804546c71ef0e5ba2265 (from https://pypi.org/simple/biocode/), version: 0.10.0
2021-07-12T21:29:12,886 Skipping link: not a file: https://pypi.org/simple/biocode/
2021-07-12T21:29:12,907 Given no hashes to check 1 links for project 'biocode': discarding no candidates
2021-07-12T21:29:12,926 Collecting biocode==0.5.3
2021-07-12T21:29:12,928   Created temporary directory: /tmp/pip-unpack-se54uvre
2021-07-12T21:29:13,265   Downloading biocode-0.5.3.tar.gz (163 kB)
2021-07-12T21:29:13,587   Added biocode==0.5.3 from https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 to build tracker '/tmp/pip-req-tracker-bept2bl2'
2021-07-12T21:29:13,588     Running setup.py (path:/tmp/pip-wheel-bmr2vxqx/biocode_c22dae1a19464fb18f62aac57a649402/setup.py) egg_info for package biocode
2021-07-12T21:29:13,589     Created temporary directory: /tmp/pip-pip-egg-info-y42rojjr
2021-07-12T21:29:13,589     Running command python setup.py egg_info
2021-07-12T21:29:14,351     /tmp/pip-wheel-bmr2vxqx/biocode_c22dae1a19464fb18f62aac57a649402/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T21:29:14,352       read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T21:29:14,576     /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T21:29:14,576       warnings.warn(msg)
2021-07-12T21:29:14,687     running egg_info
2021-07-12T21:29:14,689     creating /tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info
2021-07-12T21:29:14,690     writing /tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/PKG-INFO
2021-07-12T21:29:14,692     writing dependency_links to /tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/dependency_links.txt
2021-07-12T21:29:14,694     writing requirements to /tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/requires.txt
2021-07-12T21:29:14,695     writing top-level names to /tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/top_level.txt
2021-07-12T21:29:14,697     writing manifest file '/tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/SOURCES.txt'
2021-07-12T21:29:14,853     reading manifest file '/tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/SOURCES.txt'
2021-07-12T21:29:14,854     reading manifest template 'MANIFEST.in'
2021-07-12T21:29:14,855     warning: no files found matching 'biocode/README.rst'
2021-07-12T21:29:14,856     adding license file 'LICENSE'
2021-07-12T21:29:14,861     writing manifest file '/tmp/pip-pip-egg-info-y42rojjr/biocode.egg-info/SOURCES.txt'
2021-07-12T21:29:14,936   Source in /tmp/pip-wheel-bmr2vxqx/biocode_c22dae1a19464fb18f62aac57a649402 has version 0.5.3, which satisfies requirement biocode==0.5.3 from https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003
2021-07-12T21:29:14,937   Removed biocode==0.5.3 from https://files.pythonhosted.org/packages/3b/2d/43287226a16b06ecdf7ed706752de718042382513bf2a3a5b0c9d2a41222/biocode-0.5.3.tar.gz#sha256=446811c773f4a93604591130ab64cdf30ddb26810a468b68588876985cc44003 from build tracker '/tmp/pip-req-tracker-bept2bl2'
2021-07-12T21:29:14,941 Created temporary directory: /tmp/pip-unpack-7j5g71tn
2021-07-12T21:29:14,942 Building wheels for collected packages: biocode
2021-07-12T21:29:14,946   Created temporary directory: /tmp/pip-wheel-d90qis_3
2021-07-12T21:29:14,947   Building wheel for biocode (setup.py): started
2021-07-12T21:29:14,947   Destination directory: /tmp/pip-wheel-d90qis_3
2021-07-12T21:29:14,947   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bmr2vxqx/biocode_c22dae1a19464fb18f62aac57a649402/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bmr2vxqx/biocode_c22dae1a19464fb18f62aac57a649402/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d90qis_3
2021-07-12T21:29:15,707   /tmp/pip-wheel-bmr2vxqx/biocode_c22dae1a19464fb18f62aac57a649402/setup.py:6: DeprecationWarning: Due to possible ambiguity, 'convert()' is deprecated. Use 'convert_file()'  or 'convert_text()'.
2021-07-12T21:29:15,707     read_md = lambda f: convert(f, 'rst', 'md')
2021-07-12T21:29:15,927   /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'long'
2021-07-12T21:29:15,927     warnings.warn(msg)
2021-07-12T21:29:16,055   running bdist_wheel
2021-07-12T21:29:16,227   running build
2021-07-12T21:29:16,227   running build_py
2021-07-12T21:29:16,367   creating build
2021-07-12T21:29:16,367   creating build/lib
2021-07-12T21:29:16,368   creating build/lib/biocode
2021-07-12T21:29:16,369   copying biocode/gff.py -> build/lib/biocode
2021-07-12T21:29:16,372   copying biocode/things.py -> build/lib/biocode
2021-07-12T21:29:16,376   copying biocode/tbl.py -> build/lib/biocode
2021-07-12T21:29:16,378   copying biocode/genbank.py -> build/lib/biocode
2021-07-12T21:29:16,380   copying biocode/__init__.py -> build/lib/biocode
2021-07-12T21:29:16,382   copying biocode/annotation.py -> build/lib/biocode
2021-07-12T21:29:16,384   copying biocode/utils.py -> build/lib/biocode
2021-07-12T21:29:16,386   running egg_info
2021-07-12T21:29:16,402   writing biocode.egg-info/PKG-INFO
2021-07-12T21:29:16,404   writing dependency_links to biocode.egg-info/dependency_links.txt
2021-07-12T21:29:16,406   writing requirements to biocode.egg-info/requires.txt
2021-07-12T21:29:16,407   writing top-level names to biocode.egg-info/top_level.txt
2021-07-12T21:29:16,416   reading manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T21:29:16,420   reading manifest template 'MANIFEST.in'
2021-07-12T21:29:16,420   warning: no files found matching 'biocode/README.rst'
2021-07-12T21:29:16,421   adding license file 'LICENSE'
2021-07-12T21:29:16,429   writing manifest file 'biocode.egg-info/SOURCES.txt'
2021-07-12T21:29:16,432   creating build/lib/biocode/data
2021-07-12T21:29:16,433   copying biocode/data/HMPslim.v2.1.obo -> build/lib/biocode/data
2021-07-12T21:29:16,437   copying biocode/data/__init__.py -> build/lib/biocode/data
2021-07-12T21:29:16,439   copying biocode/data/genbank_flat_file_header.template -> build/lib/biocode/data
2021-07-12T21:29:16,442   copying biocode/data/rsem_html_table.template -> build/lib/biocode/data
2021-07-12T21:29:16,445   running build_scripts
2021-07-12T21:29:16,446   creating build/scripts-3.9
2021-07-12T21:29:16,447   copying and adjusting bin/convert_blast_btab_to_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,449   copying and adjusting bin/fasta_base_content.py -> build/scripts-3.9
2021-07-12T21:29:16,451   copying and adjusting bin/subsample_fasta.py -> build/scripts-3.9
2021-07-12T21:29:16,453   copying and adjusting bin/convert_glimmerHMM_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,455   copying and adjusting bin/merge_predicted_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,457   copying and adjusting bin/add_gff3_locus_tags.py -> build/scripts-3.9
2021-07-12T21:29:16,459   copying and adjusting bin/convert_gff3_to_gene_association_format.py -> build/scripts-3.9
2021-07-12T21:29:16,461   copying and adjusting bin/detect_inverted_repeats.py -> build/scripts-3.9
2021-07-12T21:29:16,463   copying and adjusting bin/correct_gff3_CDS_phase_column.py -> build/scripts-3.9
2021-07-12T21:29:16,465   copying and adjusting bin/remove_duplicate_features.py -> build/scripts-3.9
2021-07-12T21:29:16,467   copying and adjusting bin/merge_masked_fasta_files.py -> build/scripts-3.9
2021-07-12T21:29:16,469   copying and adjusting bin/create_taxonomic_profile_from_blast.py -> build/scripts-3.9
2021-07-12T21:29:16,471   copying and adjusting bin/check_for_embedded_fasta_headers.py -> build/scripts-3.9
2021-07-12T21:29:16,473   copying and adjusting bin/split_isoforms_into_individual_genes.py -> build/scripts-3.9
2021-07-12T21:29:16,474   copying and adjusting bin/filter_fastq_by_N_content.py -> build/scripts-3.9
2021-07-12T21:29:16,477   copying and adjusting bin/select_training_and_evaluation_transcripts.py -> build/scripts-3.9
2021-07-12T21:29:16,479   copying and adjusting bin/convert_cegma_gff_to_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,481   copying and adjusting bin/biothings_coordinate_comparisons.py -> build/scripts-3.9
2021-07-12T21:29:16,483   copying and adjusting bin/validate_fasta.py -> build/scripts-3.9
2021-07-12T21:29:16,485   copying and adjusting bin/validate_feature_boundaries_on_molecules.py -> build/scripts-3.9
2021-07-12T21:29:16,487   copying and adjusting bin/report_coverage_gaps.py -> build/scripts-3.9
2021-07-12T21:29:16,489   copying and adjusting bin/mark_partial_genes.py -> build/scripts-3.9
2021-07-12T21:29:16,491   copying and adjusting bin/convert_aat_btab_to_gff3.py -> build/scripts-3.9
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2021-07-12T21:29:16,520   copying and adjusting bin/extend_genes_to_stops.py -> build/scripts-3.9
2021-07-12T21:29:16,522   copying and adjusting bin/remove_masked_gene_models.py -> build/scripts-3.9
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2021-07-12T21:29:16,530   copying and adjusting bin/convert_metagenemark_gff_to_gff3.py -> build/scripts-3.9
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2021-07-12T21:29:16,536   copying and adjusting bin/convert_fasta_contigs_to_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,537   copying and adjusting bin/report_gff_intron_and_intergenic_stats.py -> build/scripts-3.9
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2021-07-12T21:29:16,556   copying and adjusting bin/convert_prodigal_to_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,558   copying and adjusting bin/append_to_fastq_read_header.py -> build/scripts-3.9
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2021-07-12T21:29:16,572   copying and adjusting bin/convert_scipio_gff_to_gff3.py -> build/scripts-3.9
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2021-07-12T21:29:16,580   copying and adjusting bin/make_cufflinks_ids_unique.py -> build/scripts-3.9
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2021-07-12T21:29:16,587   copying and adjusting bin/append_to_fasta_header.py -> build/scripts-3.9
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2021-07-12T21:29:16,591   copying and adjusting bin/filter_uniref_by_taxonomy.py -> build/scripts-3.9
2021-07-12T21:29:16,593   copying and adjusting bin/reformat_fasta_residue_lengths.py -> build/scripts-3.9
2021-07-12T21:29:16,594   copying and adjusting bin/replace_homopolymeric_repeats_with_Ns.py -> build/scripts-3.9
2021-07-12T21:29:16,596   copying and adjusting bin/create_rsem_html_table.py -> build/scripts-3.9
2021-07-12T21:29:16,598   copying and adjusting bin/convert_cufflinks_gtf_to_gff3.py -> build/scripts-3.9
2021-07-12T21:29:16,600   copying and adjusting bin/reorient_sequences_by_id.py -> build/scripts-3.9
2021-07-12T21:29:16,602   copying and adjusting bin/convert_fastq_to_fasta.py -> build/scripts-3.9
2021-07-12T21:29:16,604   copying and adjusting bin/write_fasta_from_gff.py -> build/scripts-3.9
2021-07-12T21:29:16,606   copying and adjusting bin/convert_pasa_gff_to_models.py -> build/scripts-3.9
2021-07-12T21:29:16,608   copying and adjusting bin/set_source_column.py -> build/scripts-3.9
2021-07-12T21:29:16,610   copying and adjusting bin/interleave_fastq.py -> build/scripts-3.9
2021-07-12T21:29:16,611   copying and adjusting bin/report_gff3_statistics.py -> build/scripts-3.9
2021-07-12T21:29:16,613   copying and adjusting bin/merge_fasta_files_and_uniquify_ids.py -> build/scripts-3.9
2021-07-12T21:29:16,614   changing mode of build/scripts-3.9/convert_blast_btab_to_gff3.py from 644 to 755
2021-07-12T21:29:16,615   changing mode of build/scripts-3.9/fasta_base_content.py from 644 to 755
2021-07-12T21:29:16,615   changing mode of build/scripts-3.9/subsample_fasta.py from 644 to 755
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2021-07-12T21:29:16,616   changing mode of build/scripts-3.9/merge_predicted_gff3.py from 644 to 755
2021-07-12T21:29:16,616   changing mode of build/scripts-3.9/add_gff3_locus_tags.py from 644 to 755
2021-07-12T21:29:16,616   changing mode of build/scripts-3.9/convert_gff3_to_gene_association_format.py from 644 to 755
2021-07-12T21:29:16,616   changing mode of build/scripts-3.9/detect_inverted_repeats.py from 644 to 755
2021-07-12T21:29:16,617   changing mode of build/scripts-3.9/correct_gff3_CDS_phase_column.py from 644 to 755
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2021-07-12T21:29:16,617   changing mode of build/scripts-3.9/create_taxonomic_profile_from_blast.py from 644 to 755
2021-07-12T21:29:16,618   changing mode of build/scripts-3.9/check_for_embedded_fasta_headers.py from 644 to 755
2021-07-12T21:29:16,618   changing mode of build/scripts-3.9/split_isoforms_into_individual_genes.py from 644 to 755
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2021-07-12T21:29:16,619   changing mode of build/scripts-3.9/convert_cegma_gff_to_gff3.py from 644 to 755
2021-07-12T21:29:16,619   changing mode of build/scripts-3.9/biothings_coordinate_comparisons.py from 644 to 755
2021-07-12T21:29:16,620   changing mode of build/scripts-3.9/validate_fasta.py from 644 to 755
2021-07-12T21:29:16,620   changing mode of build/scripts-3.9/validate_feature_boundaries_on_molecules.py from 644 to 755
2021-07-12T21:29:16,620   changing mode of build/scripts-3.9/report_coverage_gaps.py from 644 to 755
2021-07-12T21:29:16,620   changing mode of build/scripts-3.9/mark_partial_genes.py from 644 to 755
2021-07-12T21:29:16,621   changing mode of build/scripts-3.9/convert_aat_btab_to_gff3.py from 644 to 755
2021-07-12T21:29:16,621   changing mode of build/scripts-3.9/filter_uniref_by_repid.py from 644 to 755
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2021-07-12T21:29:16,622   changing mode of build/scripts-3.9/split_fasta_into_even_files.py from 644 to 755
2021-07-12T21:29:16,622   changing mode of build/scripts-3.9/replace_gff_type_column_value.py from 644 to 755
2021-07-12T21:29:16,623   changing mode of build/scripts-3.9/merge_bam_files.py from 644 to 755
2021-07-12T21:29:16,623   changing mode of build/scripts-3.9/prepend_to_fasta_header.py from 644 to 755
2021-07-12T21:29:16,623   changing mode of build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py from 644 to 755
2021-07-12T21:29:16,623   changing mode of build/scripts-3.9/check_gff_for_internal_stops.py from 644 to 755
2021-07-12T21:29:16,624   changing mode of build/scripts-3.9/remove_orphaned_features.py from 644 to 755
2021-07-12T21:29:16,624   changing mode of build/scripts-3.9/convert_gff3_to_gbk.py from 644 to 755
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2021-07-12T21:29:16,625   changing mode of build/scripts-3.9/make_go_slim_index.py from 644 to 755
2021-07-12T21:29:16,625   changing mode of build/scripts-3.9/extend_genes_to_stops.py from 644 to 755
2021-07-12T21:29:16,625   changing mode of build/scripts-3.9/remove_masked_gene_models.py from 644 to 755
2021-07-12T21:29:16,625   changing mode of build/scripts-3.9/randomly_subsample_fastq.py from 644 to 755
2021-07-12T21:29:16,626   changing mode of build/scripts-3.9/fasta_size_distribution_plot.py from 644 to 755
2021-07-12T21:29:16,626   changing mode of build/scripts-3.9/remove_duplicate_sequences.py from 644 to 755
2021-07-12T21:29:16,626   changing mode of build/scripts-3.9/convert_metagenemark_gff_to_gff3.py from 644 to 755
2021-07-12T21:29:16,626   changing mode of build/scripts-3.9/filter_fasta_by_header_regex.py from 644 to 755
2021-07-12T21:29:16,627   changing mode of build/scripts-3.9/split_molecules_on_gaps.py from 644 to 755
2021-07-12T21:29:16,627   changing mode of build/scripts-3.9/convert_fasta_contigs_to_gff3.py from 644 to 755
2021-07-12T21:29:16,627   changing mode of build/scripts-3.9/report_gff_intron_and_intergenic_stats.py from 644 to 755
2021-07-12T21:29:16,627   changing mode of build/scripts-3.9/append_to_column_9_value.py from 644 to 755
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2021-07-12T21:29:16,630   changing mode of build/scripts-3.9/convert_prodigal_to_gff3.py from 644 to 755
2021-07-12T21:29:16,630   changing mode of build/scripts-3.9/append_to_fastq_read_header.py from 644 to 755
2021-07-12T21:29:16,630   changing mode of build/scripts-3.9/convert_genbank_to_gff3.py from 644 to 755
2021-07-12T21:29:16,630   changing mode of build/scripts-3.9/validate_uniref_member_characterization.py from 644 to 755
2021-07-12T21:29:16,631   changing mode of build/scripts-3.9/compare_gene_structures.py from 644 to 755
2021-07-12T21:29:16,631   changing mode of build/scripts-3.9/uniref_to_sqlite3.py from 644 to 755
2021-07-12T21:29:16,631   changing mode of build/scripts-3.9/extract_fasta_regions.py from 644 to 755
2021-07-12T21:29:16,631   changing mode of build/scripts-3.9/reverse_misordered_cds_coords.py from 644 to 755
2021-07-12T21:29:16,632   changing mode of build/scripts-3.9/convert_scipio_gff_to_gff3.py from 644 to 755
2021-07-12T21:29:16,632   changing mode of build/scripts-3.9/interleave_fasta.py from 644 to 755
2021-07-12T21:29:16,632   changing mode of build/scripts-3.9/make_go_slim.py from 644 to 755
2021-07-12T21:29:16,632   changing mode of build/scripts-3.9/report_basic_gff_model_agreement.py from 644 to 755
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2021-07-12T21:29:16,633   changing mode of build/scripts-3.9/fastq_simple_stats.py from 644 to 755
2021-07-12T21:29:16,633   changing mode of build/scripts-3.9/eggnog_to_sqlite3.py from 644 to 755
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2021-07-12T21:29:16,634   changing mode of build/scripts-3.9/append_to_fasta_header.py from 644 to 755
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2021-07-12T21:29:16,634   changing mode of build/scripts-3.9/filter_uniref_by_taxonomy.py from 644 to 755
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2021-07-12T21:29:16,636   changing mode of build/scripts-3.9/reorient_sequences_by_id.py from 644 to 755
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2021-07-12T21:29:16,644   installing to build/bdist.linux-armv7l/wheel
2021-07-12T21:29:16,644   running install
2021-07-12T21:29:16,645   running install_lib
2021-07-12T21:29:16,650   creating build/bdist.linux-armv7l
2021-07-12T21:29:16,650   creating build/bdist.linux-armv7l/wheel
2021-07-12T21:29:16,652   creating build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,653   creating build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:29:16,654   copying build/lib/biocode/data/rsem_html_table.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:29:16,657   copying build/lib/biocode/data/HMPslim.v2.1.obo -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:29:16,661   copying build/lib/biocode/data/__init__.py -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:29:16,662   copying build/lib/biocode/data/genbank_flat_file_header.template -> build/bdist.linux-armv7l/wheel/biocode/data
2021-07-12T21:29:16,664   copying build/lib/biocode/gff.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,667   copying build/lib/biocode/things.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,671   copying build/lib/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,673   copying build/lib/biocode/genbank.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,675   copying build/lib/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,677   copying build/lib/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,680   copying build/lib/biocode/utils.py -> build/bdist.linux-armv7l/wheel/biocode
2021-07-12T21:29:16,682   running install_egg_info
2021-07-12T21:29:16,691   Copying biocode.egg-info to build/bdist.linux-armv7l/wheel/biocode-0.5.3-py3.9.egg-info
2021-07-12T21:29:16,704   running install_scripts
2021-07-12T21:29:16,736   creating build/bdist.linux-armv7l/wheel/biocode-0.5.3.data
2021-07-12T21:29:16,737   creating build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,738   copying build/scripts-3.9/filter_uniref_by_taxonomy.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,740   copying build/scripts-3.9/convert_metagenemark_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,742   copying build/scripts-3.9/create_taxonomic_profile_from_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,744   copying build/scripts-3.9/convert_gff3_to_gbk.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,747   copying build/scripts-3.9/remove_orphaned_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,748   copying build/scripts-3.9/replace_homopolymeric_repeats_with_Ns.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,751   copying build/scripts-3.9/append_to_column_9_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,753   copying build/scripts-3.9/uniprot_sprot_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,755   copying build/scripts-3.9/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,757   copying build/scripts-3.9/validate_uniref_member_characterization.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,760   copying build/scripts-3.9/create_taxonomy_db.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,762   copying build/scripts-3.9/replace_gff_type_column_value.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,764   copying build/scripts-3.9/make_go_slim.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,766   copying build/scripts-3.9/subsample_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,769   copying build/scripts-3.9/extend_genes_to_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,771   copying build/scripts-3.9/report_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,773   copying build/scripts-3.9/convert_fasta_contigs_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,775   copying build/scripts-3.9/split_molecules_on_gaps.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,777   copying build/scripts-3.9/mark_partial_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,780   copying build/scripts-3.9/append_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,782   copying build/scripts-3.9/convert_augustus_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,784   copying build/scripts-3.9/select_training_and_evaluation_transcripts.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,787   copying build/scripts-3.9/fasta_size_distribution_plot.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,789   copying build/scripts-3.9/convert_aat_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,792   copying build/scripts-3.9/filter_fasta_by_header_regex.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,794   copying build/scripts-3.9/split_interleaved_sequence_file.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,797   copying build/scripts-3.9/remove_duplicate_features.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,799   copying build/scripts-3.9/filter_uniref_by_repid.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,801   copying build/scripts-3.9/split_isoforms_into_individual_genes.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,803   copying build/scripts-3.9/merge_predicted_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,806   copying build/scripts-3.9/hmmlib_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,808   copying build/scripts-3.9/fasta_base_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,811   copying build/scripts-3.9/uniref_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,813   copying build/scripts-3.9/add_gff3_locus_tags.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,816   copying build/scripts-3.9/convert_fastq_to_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,818   copying build/scripts-3.9/merge_fasta_files_and_uniquify_ids.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,820   copying build/scripts-3.9/update_selected_column9_values.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,822   copying build/scripts-3.9/set_source_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,824   copying build/scripts-3.9/report_or_replace_nonstandard_residues.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,827   copying build/scripts-3.9/reorient_sequences_by_id.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,829   copying build/scripts-3.9/fastq_simple_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,831   copying build/scripts-3.9/correct_gff3_CDS_phase_column.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,833   copying build/scripts-3.9/filter_fastq_by_N_content.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,836   copying build/scripts-3.9/merge_bam_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,838   copying build/scripts-3.9/validate_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,841   copying build/scripts-3.9/write_fasta_from_gff.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,843   copying build/scripts-3.9/report_gff3_statistics.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,846   copying build/scripts-3.9/interleave_fasta.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,847   copying build/scripts-3.9/make_cufflinks_ids_unique.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,850   copying build/scripts-3.9/create_rsem_html_table.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,852   copying build/scripts-3.9/convert_blast_btab_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,854   copying build/scripts-3.9/filter_fasta_by_type.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,856   copying build/scripts-3.9/convert_gff3_to_gene_association_format.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,859   copying build/scripts-3.9/report_gff_intron_and_intergenic_stats.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,862   copying build/scripts-3.9/convert_pasa_gff_to_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,864   copying build/scripts-3.9/prepend_to_fasta_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,867   copying build/scripts-3.9/convert_scipio_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,869   copying build/scripts-3.9/validate_feature_boundaries_on_molecules.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,871   copying build/scripts-3.9/remove_masked_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,874   copying build/scripts-3.9/reformat_fasta_residue_lengths.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,876   copying build/scripts-3.9/detect_inverted_repeats.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,878   copying build/scripts-3.9/make_go_slim_index.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,880   copying build/scripts-3.9/check_for_embedded_fasta_headers.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,883   copying build/scripts-3.9/convert_cegma_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,885   copying build/scripts-3.9/merge_masked_fasta_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,887   copying build/scripts-3.9/biothings_coordinate_comparisons.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,889   copying build/scripts-3.9/split_fasta_into_even_files.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,891   copying build/scripts-3.9/convert_prodigal_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,894   copying build/scripts-3.9/filter_gff3_by_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,896   copying build/scripts-3.9/randomly_subsample_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,899   copying build/scripts-3.9/reverse_misordered_cds_coords.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,901   copying build/scripts-3.9/report_basic_gff_model_agreement.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,903   copying build/scripts-3.9/interleave_fastq.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,905   copying build/scripts-3.9/eggnog_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,908   copying build/scripts-3.9/convert_cufflinks_gtf_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,911   copying build/scripts-3.9/check_gff_for_internal_stops.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,913   copying build/scripts-3.9/add_polypeptide_to_gff3_gene_models.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,916   copying build/scripts-3.9/remove_duplicate_sequences.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,918   copying build/scripts-3.9/get_mpilup_from_id_list.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,920   copying build/scripts-3.9/convert_glimmerHMM_gff_to_gff3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,922   copying build/scripts-3.9/extract_fasta_regions.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,924   copying build/scripts-3.9/tigrfam_info_to_sqlite3.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,927   copying build/scripts-3.9/calculate_query_coverage_by_blast.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,929   copying build/scripts-3.9/append_to_fastq_read_header.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,931   copying build/scripts-3.9/compare_gene_structures.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,935   copying build/scripts-3.9/convert_gff3_to_ncbi_tbl.py -> build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts
2021-07-12T21:29:16,937   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/filter_uniref_by_taxonomy.py to 755
2021-07-12T21:29:16,937   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_metagenemark_gff_to_gff3.py to 755
2021-07-12T21:29:16,937   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/create_taxonomic_profile_from_blast.py to 755
2021-07-12T21:29:16,938   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_gff3_to_gbk.py to 755
2021-07-12T21:29:16,938   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/remove_orphaned_features.py to 755
2021-07-12T21:29:16,938   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/replace_homopolymeric_repeats_with_Ns.py to 755
2021-07-12T21:29:16,939   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/append_to_column_9_value.py to 755
2021-07-12T21:29:16,939   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/uniprot_sprot_to_sqlite3.py to 755
2021-07-12T21:29:16,940   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_genbank_to_gff3.py to 755
2021-07-12T21:29:16,940   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/validate_uniref_member_characterization.py to 755
2021-07-12T21:29:16,940   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/create_taxonomy_db.py to 755
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2021-07-12T21:29:16,941   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/make_go_slim.py to 755
2021-07-12T21:29:16,941   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/subsample_fasta.py to 755
2021-07-12T21:29:16,941   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/extend_genes_to_stops.py to 755
2021-07-12T21:29:16,942   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/report_coverage_gaps.py to 755
2021-07-12T21:29:16,942   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_fasta_contigs_to_gff3.py to 755
2021-07-12T21:29:16,942   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/split_molecules_on_gaps.py to 755
2021-07-12T21:29:16,943   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/mark_partial_genes.py to 755
2021-07-12T21:29:16,943   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/append_to_fasta_header.py to 755
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2021-07-12T21:29:16,943   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/select_training_and_evaluation_transcripts.py to 755
2021-07-12T21:29:16,944   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/fasta_size_distribution_plot.py to 755
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2021-07-12T21:29:16,945   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/remove_duplicate_features.py to 755
2021-07-12T21:29:16,945   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/filter_uniref_by_repid.py to 755
2021-07-12T21:29:16,946   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/split_isoforms_into_individual_genes.py to 755
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2021-07-12T21:29:16,948   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/merge_fasta_files_and_uniquify_ids.py to 755
2021-07-12T21:29:16,948   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/update_selected_column9_values.py to 755
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2021-07-12T21:29:16,948   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/report_or_replace_nonstandard_residues.py to 755
2021-07-12T21:29:16,949   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/reorient_sequences_by_id.py to 755
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2021-07-12T21:29:16,950   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/filter_fastq_by_N_content.py to 755
2021-07-12T21:29:16,950   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/merge_bam_files.py to 755
2021-07-12T21:29:16,950   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/validate_fasta.py to 755
2021-07-12T21:29:16,951   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/write_fasta_from_gff.py to 755
2021-07-12T21:29:16,951   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/report_gff3_statistics.py to 755
2021-07-12T21:29:16,951   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/interleave_fasta.py to 755
2021-07-12T21:29:16,952   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/make_cufflinks_ids_unique.py to 755
2021-07-12T21:29:16,952   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/create_rsem_html_table.py to 755
2021-07-12T21:29:16,952   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_blast_btab_to_gff3.py to 755
2021-07-12T21:29:16,952   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/filter_fasta_by_type.py to 755
2021-07-12T21:29:16,953   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_gff3_to_gene_association_format.py to 755
2021-07-12T21:29:16,953   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/report_gff_intron_and_intergenic_stats.py to 755
2021-07-12T21:29:16,953   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_pasa_gff_to_models.py to 755
2021-07-12T21:29:16,954   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/prepend_to_fasta_header.py to 755
2021-07-12T21:29:16,954   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_scipio_gff_to_gff3.py to 755
2021-07-12T21:29:16,954   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/validate_feature_boundaries_on_molecules.py to 755
2021-07-12T21:29:16,954   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/remove_masked_gene_models.py to 755
2021-07-12T21:29:16,955   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/reformat_fasta_residue_lengths.py to 755
2021-07-12T21:29:16,955   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/detect_inverted_repeats.py to 755
2021-07-12T21:29:16,955   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/make_go_slim_index.py to 755
2021-07-12T21:29:16,955   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/check_for_embedded_fasta_headers.py to 755
2021-07-12T21:29:16,956   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_cegma_gff_to_gff3.py to 755
2021-07-12T21:29:16,956   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/merge_masked_fasta_files.py to 755
2021-07-12T21:29:16,956   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/biothings_coordinate_comparisons.py to 755
2021-07-12T21:29:16,956   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/split_fasta_into_even_files.py to 755
2021-07-12T21:29:16,957   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_prodigal_to_gff3.py to 755
2021-07-12T21:29:16,957   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/filter_gff3_by_id_list.py to 755
2021-07-12T21:29:16,957   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/randomly_subsample_fastq.py to 755
2021-07-12T21:29:16,958   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/reverse_misordered_cds_coords.py to 755
2021-07-12T21:29:16,958   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/report_basic_gff_model_agreement.py to 755
2021-07-12T21:29:16,958   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/interleave_fastq.py to 755
2021-07-12T21:29:16,958   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/eggnog_to_sqlite3.py to 755
2021-07-12T21:29:16,959   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_cufflinks_gtf_to_gff3.py to 755
2021-07-12T21:29:16,959   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/check_gff_for_internal_stops.py to 755
2021-07-12T21:29:16,959   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/add_polypeptide_to_gff3_gene_models.py to 755
2021-07-12T21:29:16,959   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/remove_duplicate_sequences.py to 755
2021-07-12T21:29:16,960   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/get_mpilup_from_id_list.py to 755
2021-07-12T21:29:16,960   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_glimmerHMM_gff_to_gff3.py to 755
2021-07-12T21:29:16,960   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/extract_fasta_regions.py to 755
2021-07-12T21:29:16,960   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/tigrfam_info_to_sqlite3.py to 755
2021-07-12T21:29:16,961   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/calculate_query_coverage_by_blast.py to 755
2021-07-12T21:29:16,961   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/append_to_fastq_read_header.py to 755
2021-07-12T21:29:16,961   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/compare_gene_structures.py to 755
2021-07-12T21:29:16,962   changing mode of build/bdist.linux-armv7l/wheel/biocode-0.5.3.data/scripts/convert_gff3_to_ncbi_tbl.py to 755
2021-07-12T21:29:16,982   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T21:29:16,987   creating build/bdist.linux-armv7l/wheel/biocode-0.5.3.dist-info/WHEEL
2021-07-12T21:29:16,989   creating '/tmp/pip-wheel-d90qis_3/biocode-0.5.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T21:29:16,992   adding 'biocode/__init__.py'
2021-07-12T21:29:16,995   adding 'biocode/annotation.py'
2021-07-12T21:29:16,997   adding 'biocode/genbank.py'
2021-07-12T21:29:17,002   adding 'biocode/gff.py'
2021-07-12T21:29:17,004   adding 'biocode/tbl.py'
2021-07-12T21:29:17,012   adding 'biocode/things.py'
2021-07-12T21:29:17,015   adding 'biocode/utils.py'
2021-07-12T21:29:17,020   adding 'biocode/data/HMPslim.v2.1.obo'
2021-07-12T21:29:17,021   adding 'biocode/data/__init__.py'
2021-07-12T21:29:17,023   adding 'biocode/data/genbank_flat_file_header.template'
2021-07-12T21:29:17,024   adding 'biocode/data/rsem_html_table.template'
2021-07-12T21:29:17,029   adding 'biocode-0.5.3.data/scripts/add_gff3_locus_tags.py'
2021-07-12T21:29:17,030   adding 'biocode-0.5.3.data/scripts/add_polypeptide_to_gff3_gene_models.py'
2021-07-12T21:29:17,032   adding 'biocode-0.5.3.data/scripts/append_to_column_9_value.py'
2021-07-12T21:29:17,033   adding 'biocode-0.5.3.data/scripts/append_to_fasta_header.py'
2021-07-12T21:29:17,034   adding 'biocode-0.5.3.data/scripts/append_to_fastq_read_header.py'
2021-07-12T21:29:17,035   adding 'biocode-0.5.3.data/scripts/biothings_coordinate_comparisons.py'
2021-07-12T21:29:17,037   adding 'biocode-0.5.3.data/scripts/calculate_query_coverage_by_blast.py'
2021-07-12T21:29:17,038   adding 'biocode-0.5.3.data/scripts/check_for_embedded_fasta_headers.py'
2021-07-12T21:29:17,040   adding 'biocode-0.5.3.data/scripts/check_gff_for_internal_stops.py'
2021-07-12T21:29:17,043   adding 'biocode-0.5.3.data/scripts/compare_gene_structures.py'
2021-07-12T21:29:17,045   adding 'biocode-0.5.3.data/scripts/convert_aat_btab_to_gff3.py'
2021-07-12T21:29:17,047   adding 'biocode-0.5.3.data/scripts/convert_augustus_to_gff3.py'
2021-07-12T21:29:17,049   adding 'biocode-0.5.3.data/scripts/convert_blast_btab_to_gff3.py'
2021-07-12T21:29:17,050   adding 'biocode-0.5.3.data/scripts/convert_cegma_gff_to_gff3.py'
2021-07-12T21:29:17,052   adding 'biocode-0.5.3.data/scripts/convert_cufflinks_gtf_to_gff3.py'
2021-07-12T21:29:17,053   adding 'biocode-0.5.3.data/scripts/convert_fasta_contigs_to_gff3.py'
2021-07-12T21:29:17,054   adding 'biocode-0.5.3.data/scripts/convert_fastq_to_fasta.py'
2021-07-12T21:29:17,056   adding 'biocode-0.5.3.data/scripts/convert_genbank_to_gff3.py'
2021-07-12T21:29:17,058   adding 'biocode-0.5.3.data/scripts/convert_gff3_to_gbk.py'
2021-07-12T21:29:17,060   adding 'biocode-0.5.3.data/scripts/convert_gff3_to_gene_association_format.py'
2021-07-12T21:29:17,061   adding 'biocode-0.5.3.data/scripts/convert_gff3_to_ncbi_tbl.py'
2021-07-12T21:29:17,062   adding 'biocode-0.5.3.data/scripts/convert_glimmerHMM_gff_to_gff3.py'
2021-07-12T21:29:17,064   adding 'biocode-0.5.3.data/scripts/convert_metagenemark_gff_to_gff3.py'
2021-07-12T21:29:17,066   adding 'biocode-0.5.3.data/scripts/convert_pasa_gff_to_models.py'
2021-07-12T21:29:17,067   adding 'biocode-0.5.3.data/scripts/convert_prodigal_to_gff3.py'
2021-07-12T21:29:17,068   adding 'biocode-0.5.3.data/scripts/convert_scipio_gff_to_gff3.py'
2021-07-12T21:29:17,070   adding 'biocode-0.5.3.data/scripts/correct_gff3_CDS_phase_column.py'
2021-07-12T21:29:17,071   adding 'biocode-0.5.3.data/scripts/create_rsem_html_table.py'
2021-07-12T21:29:17,073   adding 'biocode-0.5.3.data/scripts/create_taxonomic_profile_from_blast.py'
2021-07-12T21:29:17,075   adding 'biocode-0.5.3.data/scripts/create_taxonomy_db.py'
2021-07-12T21:29:17,076   adding 'biocode-0.5.3.data/scripts/detect_inverted_repeats.py'
2021-07-12T21:29:17,078   adding 'biocode-0.5.3.data/scripts/eggnog_to_sqlite3.py'
2021-07-12T21:29:17,080   adding 'biocode-0.5.3.data/scripts/extend_genes_to_stops.py'
2021-07-12T21:29:17,081   adding 'biocode-0.5.3.data/scripts/extract_fasta_regions.py'
2021-07-12T21:29:17,082   adding 'biocode-0.5.3.data/scripts/fasta_base_content.py'
2021-07-12T21:29:17,084   adding 'biocode-0.5.3.data/scripts/fasta_size_distribution_plot.py'
2021-07-12T21:29:17,085   adding 'biocode-0.5.3.data/scripts/fastq_simple_stats.py'
2021-07-12T21:29:17,086   adding 'biocode-0.5.3.data/scripts/filter_fasta_by_header_regex.py'
2021-07-12T21:29:17,087   adding 'biocode-0.5.3.data/scripts/filter_fasta_by_type.py'
2021-07-12T21:29:17,089   adding 'biocode-0.5.3.data/scripts/filter_fastq_by_N_content.py'
2021-07-12T21:29:17,090   adding 'biocode-0.5.3.data/scripts/filter_gff3_by_id_list.py'
2021-07-12T21:29:17,092   adding 'biocode-0.5.3.data/scripts/filter_uniref_by_repid.py'
2021-07-12T21:29:17,093   adding 'biocode-0.5.3.data/scripts/filter_uniref_by_taxonomy.py'
2021-07-12T21:29:17,094   adding 'biocode-0.5.3.data/scripts/get_mpilup_from_id_list.py'
2021-07-12T21:29:17,096   adding 'biocode-0.5.3.data/scripts/hmmlib_to_sqlite3.py'
2021-07-12T21:29:17,098   adding 'biocode-0.5.3.data/scripts/interleave_fasta.py'
2021-07-12T21:29:17,099   adding 'biocode-0.5.3.data/scripts/interleave_fastq.py'
2021-07-12T21:29:17,100   adding 'biocode-0.5.3.data/scripts/make_cufflinks_ids_unique.py'
2021-07-12T21:29:17,102   adding 'biocode-0.5.3.data/scripts/make_go_slim.py'
2021-07-12T21:29:17,104   adding 'biocode-0.5.3.data/scripts/make_go_slim_index.py'
2021-07-12T21:29:17,105   adding 'biocode-0.5.3.data/scripts/mark_partial_genes.py'
2021-07-12T21:29:17,107   adding 'biocode-0.5.3.data/scripts/merge_bam_files.py'
2021-07-12T21:29:17,108   adding 'biocode-0.5.3.data/scripts/merge_fasta_files_and_uniquify_ids.py'
2021-07-12T21:29:17,109   adding 'biocode-0.5.3.data/scripts/merge_masked_fasta_files.py'
2021-07-12T21:29:17,111   adding 'biocode-0.5.3.data/scripts/merge_predicted_gff3.py'
2021-07-12T21:29:17,112   adding 'biocode-0.5.3.data/scripts/prepend_to_fasta_header.py'
2021-07-12T21:29:17,114   adding 'biocode-0.5.3.data/scripts/randomly_subsample_fastq.py'
2021-07-12T21:29:17,115   adding 'biocode-0.5.3.data/scripts/reformat_fasta_residue_lengths.py'
2021-07-12T21:29:17,116   adding 'biocode-0.5.3.data/scripts/remove_duplicate_features.py'
2021-07-12T21:29:17,118   adding 'biocode-0.5.3.data/scripts/remove_duplicate_sequences.py'
2021-07-12T21:29:17,119   adding 'biocode-0.5.3.data/scripts/remove_masked_gene_models.py'
2021-07-12T21:29:17,120   adding 'biocode-0.5.3.data/scripts/remove_orphaned_features.py'
2021-07-12T21:29:17,121   adding 'biocode-0.5.3.data/scripts/reorient_sequences_by_id.py'
2021-07-12T21:29:17,123   adding 'biocode-0.5.3.data/scripts/replace_gff_type_column_value.py'
2021-07-12T21:29:17,124   adding 'biocode-0.5.3.data/scripts/replace_homopolymeric_repeats_with_Ns.py'
2021-07-12T21:29:17,125   adding 'biocode-0.5.3.data/scripts/report_basic_gff_model_agreement.py'
2021-07-12T21:29:17,127   adding 'biocode-0.5.3.data/scripts/report_coverage_gaps.py'
2021-07-12T21:29:17,128   adding 'biocode-0.5.3.data/scripts/report_gff3_statistics.py'
2021-07-12T21:29:17,130   adding 'biocode-0.5.3.data/scripts/report_gff_intron_and_intergenic_stats.py'
2021-07-12T21:29:17,132   adding 'biocode-0.5.3.data/scripts/report_or_replace_nonstandard_residues.py'
2021-07-12T21:29:17,133   adding 'biocode-0.5.3.data/scripts/reverse_misordered_cds_coords.py'
2021-07-12T21:29:17,134   adding 'biocode-0.5.3.data/scripts/select_training_and_evaluation_transcripts.py'
2021-07-12T21:29:17,136   adding 'biocode-0.5.3.data/scripts/set_source_column.py'
2021-07-12T21:29:17,137   adding 'biocode-0.5.3.data/scripts/split_fasta_into_even_files.py'
2021-07-12T21:29:17,138   adding 'biocode-0.5.3.data/scripts/split_interleaved_sequence_file.py'
2021-07-12T21:29:17,140   adding 'biocode-0.5.3.data/scripts/split_isoforms_into_individual_genes.py'
2021-07-12T21:29:17,141   adding 'biocode-0.5.3.data/scripts/split_molecules_on_gaps.py'
2021-07-12T21:29:17,142   adding 'biocode-0.5.3.data/scripts/subsample_fasta.py'
2021-07-12T21:29:17,144   adding 'biocode-0.5.3.data/scripts/tigrfam_info_to_sqlite3.py'
2021-07-12T21:29:17,145   adding 'biocode-0.5.3.data/scripts/uniprot_sprot_to_sqlite3.py'
2021-07-12T21:29:17,147   adding 'biocode-0.5.3.data/scripts/uniref_to_sqlite3.py'
2021-07-12T21:29:17,149   adding 'biocode-0.5.3.data/scripts/update_selected_column9_values.py'
2021-07-12T21:29:17,150   adding 'biocode-0.5.3.data/scripts/validate_fasta.py'
2021-07-12T21:29:17,152   adding 'biocode-0.5.3.data/scripts/validate_feature_boundaries_on_molecules.py'
2021-07-12T21:29:17,153   adding 'biocode-0.5.3.data/scripts/validate_uniref_member_characterization.py'
2021-07-12T21:29:17,155   adding 'biocode-0.5.3.data/scripts/write_fasta_from_gff.py'
2021-07-12T21:29:17,157   adding 'biocode-0.5.3.dist-info/LICENSE'
2021-07-12T21:29:17,158   adding 'biocode-0.5.3.dist-info/METADATA'
2021-07-12T21:29:17,159   adding 'biocode-0.5.3.dist-info/WHEEL'
2021-07-12T21:29:17,160   adding 'biocode-0.5.3.dist-info/top_level.txt'
2021-07-12T21:29:17,162   adding 'biocode-0.5.3.dist-info/RECORD'
2021-07-12T21:29:17,167   removing build/bdist.linux-armv7l/wheel
2021-07-12T21:29:17,283   Building wheel for biocode (setup.py): finished with status 'done'
2021-07-12T21:29:17,288   Created wheel for biocode: filename=biocode-0.5.3-py3-none-any.whl size=218431 sha256=d47b9988366ce2efc4b61fa29fa149d6518a5abd2b645ef30ca873b2a156d656
2021-07-12T21:29:17,288   Stored in directory: /tmp/pip-ephem-wheel-cache-w4a85kid/wheels/c1/28/4a/9366744f6c5901b8de9ae2bd07445ffc79a66f2b94f04e1455
2021-07-12T21:29:17,300 Successfully built biocode
2021-07-12T21:29:17,309 Removed build tracker: '/tmp/pip-req-tracker-bept2bl2'