2021-07-12T21:48:23,537 Created temporary directory: /tmp/pip-ephem-wheel-cache-k6vv3s3f
2021-07-12T21:48:23,540 Created temporary directory: /tmp/pip-req-tracker-qu_3kdo6
2021-07-12T21:48:23,540 Initialized build tracking at /tmp/pip-req-tracker-qu_3kdo6
2021-07-12T21:48:23,541 Created build tracker: /tmp/pip-req-tracker-qu_3kdo6
2021-07-12T21:48:23,541 Entered build tracker: /tmp/pip-req-tracker-qu_3kdo6
2021-07-12T21:48:23,542 Created temporary directory: /tmp/pip-wheel-4f3pdmr6
2021-07-12T21:48:23,578 1 location(s) to search for versions of bhmm:
2021-07-12T21:48:23,578 * https://pypi.org/simple/bhmm/
2021-07-12T21:48:23,578 Fetching project page and analyzing links: https://pypi.org/simple/bhmm/
2021-07-12T21:48:23,579 Getting page https://pypi.org/simple/bhmm/
2021-07-12T21:48:23,581 Found index url https://pypi.org/simple
2021-07-12T21:48:23,761   Found link https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 (from https://pypi.org/simple/bhmm/), version: 0.3.0
2021-07-12T21:48:23,762   Found link https://files.pythonhosted.org/packages/b3/52/116bf9a87fb6d56bca3d8d0c87bef8597b43e6cf0a6f2bf4aca530e4ce7f/bhmm-0.4.2.tar.gz#sha256=1bc7a713bbda2c81878d0d798d51692fedfa18707543095e2b9584989cf432b3 (from https://pypi.org/simple/bhmm/), version: 0.4.2
2021-07-12T21:48:23,762   Found link https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 (from https://pypi.org/simple/bhmm/), version: 0.5.0
2021-07-12T21:48:23,762   Found link https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e (from https://pypi.org/simple/bhmm/), version: 0.5.1
2021-07-12T21:48:23,763   Found link https://files.pythonhosted.org/packages/14/17/9043b8dfb2d04ab7de09b3057d37c1385056d63702e4cca539b121e806e6/bhmm-0.5.2.tar.gz#sha256=c2848188a73e7da6735ac7a636f8892f2dd939a6148437cc8fd84c4d2f5b21fb (from https://pypi.org/simple/bhmm/), version: 0.5.2
2021-07-12T21:48:23,763   Found link https://files.pythonhosted.org/packages/ee/78/d607b2d74022a4146c5d1940f9e78ffaaabc55c1defdbe9ddcba92ba08a4/bhmm-0.5.3.tar.gz#sha256=77d4e4ad546537a0f0efd78b3180a7d0d0836e92d9d5efc698fcd7740da46d6f (from https://pypi.org/simple/bhmm/), version: 0.5.3
2021-07-12T21:48:23,764   Found link https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae (from https://pypi.org/simple/bhmm/), version: 0.6
2021-07-12T21:48:23,764   Found link https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e (from https://pypi.org/simple/bhmm/), version: 0.6.1
2021-07-12T21:48:23,764   Found link https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 (from https://pypi.org/simple/bhmm/), version: 0.6.2
2021-07-12T21:48:23,765   Found link https://files.pythonhosted.org/packages/ac/91/27b35bfc73cfe529ed9d4133b2fa20180ccaa2c6c9f55e49779f1319ecf0/bhmm-0.6.3.tar.gz#sha256=f7a920542a18e65debb894e4287990255e32306f026892fa3b82e902d45e5dd2 (from https://pypi.org/simple/bhmm/), version: 0.6.3
2021-07-12T21:48:23,765 Skipping link: not a file: https://pypi.org/simple/bhmm/
2021-07-12T21:48:23,786 Given no hashes to check 1 links for project 'bhmm': discarding no candidates
2021-07-12T21:48:23,808 Collecting bhmm==0.6.2
2021-07-12T21:48:23,809   Created temporary directory: /tmp/pip-unpack-7q6e5_ii
2021-07-12T21:48:24,086   Downloading bhmm-0.6.2.tar.gz (316 kB)
2021-07-12T21:48:24,412   Added bhmm==0.6.2 from https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 to build tracker '/tmp/pip-req-tracker-qu_3kdo6'
2021-07-12T21:48:24,413     Running setup.py (path:/tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771/setup.py) egg_info for package bhmm
2021-07-12T21:48:24,414     Created temporary directory: /tmp/pip-pip-egg-info-gl7mijdm
2021-07-12T21:48:24,415     Running command python setup.py egg_info
2021-07-12T21:48:25,766     running egg_info
2021-07-12T21:48:25,769     creating /tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info
2021-07-12T21:48:25,770     writing /tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/PKG-INFO
2021-07-12T21:48:25,773     writing dependency_links to /tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/dependency_links.txt
2021-07-12T21:48:25,775     writing requirements to /tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/requires.txt
2021-07-12T21:48:27,118     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771/bhmm/hidden/impl_c/hidden.pyx
2021-07-12T21:48:27,118       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T21:48:28,876     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771/bhmm/output_models/impl_c/discrete.pyx
2021-07-12T21:48:28,877       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T21:48:30,266     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771/bhmm/output_models/impl_c/gaussian.pyx
2021-07-12T21:48:30,267       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T21:48:31,791     Compiling ./bhmm/hidden/impl_c/hidden.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T21:48:31,791     Compiling ./bhmm/output_models/impl_c/discrete.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T21:48:31,791     Compiling ./bhmm/output_models/impl_c/gaussian.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T21:48:31,791     [1/3] Cythonizing ./bhmm/hidden/impl_c/hidden.pyx
2021-07-12T21:48:31,791     [2/3] Cythonizing ./bhmm/output_models/impl_c/discrete.pyx
2021-07-12T21:48:31,792     [3/3] Cythonizing ./bhmm/output_models/impl_c/gaussian.pyx
2021-07-12T21:48:31,792     writing top-level names to /tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/top_level.txt
2021-07-12T21:48:31,793     writing manifest file '/tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/SOURCES.txt'
2021-07-12T21:48:31,869     reading manifest file '/tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/SOURCES.txt'
2021-07-12T21:48:31,872     reading manifest template 'MANIFEST.in'
2021-07-12T21:48:32,012     writing manifest file '/tmp/pip-pip-egg-info-gl7mijdm/bhmm.egg-info/SOURCES.txt'
2021-07-12T21:48:32,286   Source in /tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771 has version 0.6.2, which satisfies requirement bhmm==0.6.2 from https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464
2021-07-12T21:48:32,287   Removed bhmm==0.6.2 from https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 from build tracker '/tmp/pip-req-tracker-qu_3kdo6'
2021-07-12T21:48:32,292 Created temporary directory: /tmp/pip-unpack-f99vjau0
2021-07-12T21:48:32,292 Building wheels for collected packages: bhmm
2021-07-12T21:48:32,297   Created temporary directory: /tmp/pip-wheel-oe2czpr2
2021-07-12T21:48:32,298   Building wheel for bhmm (setup.py): started
2021-07-12T21:48:32,298   Destination directory: /tmp/pip-wheel-oe2czpr2
2021-07-12T21:48:32,298   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4f3pdmr6/bhmm_39ce5b9b990f4cc498ddb0200c424771/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oe2czpr2
2021-07-12T21:48:33,631   running bdist_wheel
2021-07-12T21:48:34,820   running build
2021-07-12T21:48:34,821   running build_py
2021-07-12T21:48:34,828   creating build
2021-07-12T21:48:34,828   creating build/lib.linux-armv7l-3.9
2021-07-12T21:48:34,829   creating build/lib.linux-armv7l-3.9/bhmm
2021-07-12T21:48:34,830   copying bhmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-12T21:48:34,833   copying bhmm/version.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-12T21:48:34,834   copying bhmm/api.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-12T21:48:34,838   creating build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-12T21:48:34,839   copying bhmm/hidden/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-12T21:48:34,841   copying bhmm/hidden/api.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-12T21:48:34,844   creating build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-12T21:48:34,845   copying bhmm/estimators/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-12T21:48:34,848   copying bhmm/estimators/bayesian_sampling.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-12T21:48:34,850   copying bhmm/estimators/maximum_likelihood.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-12T21:48:34,853   copying bhmm/estimators/_tmatrix_disconnected.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-12T21:48:34,857   creating build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,858   copying bhmm/tests/test_testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,860   copying bhmm/tests/test_init_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,863   copying bhmm/tests/test_output_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,865   copying bhmm/tests/test_bhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,868   copying bhmm/tests/test_init_discrete.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,870   copying bhmm/tests/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,872   copying bhmm/tests/test_mlhmm_patho.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,875   copying bhmm/tests/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,878   copying bhmm/tests/test_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,881   copying bhmm/tests/test_bhmm_patho.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,883   copying bhmm/tests/test_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,885   copying bhmm/tests/benchmark_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-12T21:48:34,889   creating build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-12T21:48:34,890   copying bhmm/output_models/outputmodel.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-12T21:48:34,893   copying bhmm/output_models/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-12T21:48:34,895   copying bhmm/output_models/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-12T21:48:34,898   copying bhmm/output_models/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-12T21:48:34,902   creating build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-12T21:48:34,903   copying bhmm/_external/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-12T21:48:34,905   creating build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,907   copying bhmm/util/analysis.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,910   copying bhmm/util/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,912   copying bhmm/util/config.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,914   copying bhmm/util/statistics.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,916   copying bhmm/util/types.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,919   copying bhmm/util/logger.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,921   copying bhmm/util/testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-12T21:48:34,925   creating build/lib.linux-armv7l-3.9/bhmm/init
2021-07-12T21:48:34,926   copying bhmm/init/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-12T21:48:34,929   copying bhmm/init/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-12T21:48:34,932   copying bhmm/init/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-12T21:48:34,935   creating build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-12T21:48:34,936   copying bhmm/hmm/generic_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-12T21:48:34,940   copying bhmm/hmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-12T21:48:34,942   copying bhmm/hmm/gaussian_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-12T21:48:34,944   copying bhmm/hmm/generic_sampled_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-12T21:48:34,947   copying bhmm/hmm/discrete_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-12T21:48:34,950   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-12T21:48:34,951   copying bhmm/hidden/impl_python/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-12T21:48:34,953   copying bhmm/hidden/impl_python/hidden.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-12T21:48:34,957   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-12T21:48:34,958   copying bhmm/hidden/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-12T21:48:34,961   creating build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-12T21:48:34,962   copying bhmm/output_models/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-12T21:48:34,965   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-12T21:48:34,966   copying bhmm/_external/sklearn/base.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-12T21:48:34,968   copying bhmm/_external/sklearn/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-12T21:48:34,970   copying bhmm/_external/sklearn/utils.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-12T21:48:34,974   creating build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-12T21:48:34,975   copying bhmm/_external/clustering/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-12T21:48:34,978   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-12T21:48:34,979   copying bhmm/_external/sklearn/mixture/gmm.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-12T21:48:34,982   copying bhmm/_external/sklearn/mixture/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-12T21:48:34,984   creating build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-12T21:48:34,985   copying bhmm/tests/data/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-12T21:48:34,988   copying bhmm/tests/data/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-12T21:48:34,990   copying bhmm/tests/data/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-12T21:48:35,012   running build_ext
2021-07-12T21:48:35,019   building 'bhmm.hidden.impl_c.hidden' extension
2021-07-12T21:48:35,020   creating build/temp.linux-armv7l-3.9
2021-07-12T21:48:35,021   creating build/temp.linux-armv7l-3.9/bhmm
2021-07-12T21:48:35,021   creating build/temp.linux-armv7l-3.9/bhmm/hidden
2021-07-12T21:48:35,022   creating build/temp.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-12T21:48:35,023   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/_hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o
2021-07-12T21:48:35,745   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o
2021-07-12T21:48:36,201   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:36,201                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:36,201                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:36,202                    from ./bhmm/hidden/impl_c/hidden.c:638:
2021-07-12T21:48:36,202   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:36,202      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:36,202         |  ^~~~~~~
2021-07-12T21:48:43,351   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o -o build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so
2021-07-12T21:48:43,580   building 'bhmm.output_models.impl_c.discrete' extension
2021-07-12T21:48:43,581   creating build/temp.linux-armv7l-3.9/bhmm/output_models
2021-07-12T21:48:43,582   creating build/temp.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-12T21:48:43,583   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o
2021-07-12T21:48:43,666   ./bhmm/output_models/impl_c/_discrete.c: In function ‘_update_pout’:
2021-07-12T21:48:43,667   ./bhmm/output_models/impl_c/_discrete.c:22:12: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-12T21:48:43,667      22 |     int i, j, t, o;
2021-07-12T21:48:43,668         |            ^
2021-07-12T21:48:43,739   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o
2021-07-12T21:48:44,244   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:44,244                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:44,245                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:44,245                    from ./bhmm/output_models/impl_c/discrete.c:638:
2021-07-12T21:48:44,245   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:44,245      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:44,246         |  ^~~~~~~
2021-07-12T21:48:46,938   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so
2021-07-12T21:48:47,091   building 'bhmm.output_models.impl_c.gaussian' extension
2021-07-12T21:48:47,091   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o
2021-07-12T21:48:47,276   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o
2021-07-12T21:48:47,690   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:47,690                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:47,691                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:47,691                    from ./bhmm/output_models/impl_c/gaussian.c:638:
2021-07-12T21:48:47,691   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:47,691      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:47,691         |  ^~~~~~~
2021-07-12T21:48:53,131   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so
2021-07-12T21:48:53,315   building 'bhmm._external.clustering.kmeans_clustering_64' extension
2021-07-12T21:48:53,316   creating build/temp.linux-armv7l-3.9/bhmm/_external
2021-07-12T21:48:53,316   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-12T21:48:53,317   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering/src
2021-07-12T21:48:53,322   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/clustering.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o -std=c99 -O3 -DCLUSTERING_64
2021-07-12T21:48:53,744   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:53,745                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:53,745                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:53,745                    from ./bhmm/_external/clustering/include/clustering.h:41,
2021-07-12T21:48:53,745                    from ./bhmm/_external/clustering/src/clustering.c:27:
2021-07-12T21:48:53,745   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:53,745      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:53,746         |  ^~~~~~~
2021-07-12T21:48:53,967   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/kmeans.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -std=c99 -O3 -DCLUSTERING_64
2021-07-12T21:48:54,303   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:54,303                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:54,303                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:54,303                    from ./bhmm/_external/clustering/include/clustering.h:41,
2021-07-12T21:48:54,303                    from ./bhmm/_external/clustering/src/kmeans.c:27:
2021-07-12T21:48:54,304   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:54,304      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:54,304         |  ^~~~~~~
2021-07-12T21:48:54,330   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-12T21:48:54,330   ./bhmm/_external/clustering/src/kmeans.c:58:38: warning: variable ‘py_res’ set but not used [-Wunused-but-set-variable]
2021-07-12T21:48:54,331      58 |     PyObject *py_centers, *py_item, *py_res;
2021-07-12T21:48:54,331         |                                      ^~~~~~
2021-07-12T21:48:54,349   At top level:
2021-07-12T21:48:54,349   ./bhmm/_external/clustering/src/kmeans.c:555:1: warning: ‘error_out’ defined but not used [-Wunused-function]
2021-07-12T21:48:54,350     555 | error_out(PyObject *m) {
2021-07-12T21:48:54,350         | ^~~~~~~~~
2021-07-12T21:48:54,476   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-12T21:48:54,476   ./bhmm/_external/clustering/src/kmeans.c:186:50: warning: ‘closest_center_index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-12T21:48:54,477     186 |          new_centers[closest_center_index*dim+j] += chunk[i*dim+j];
2021-07-12T21:48:54,477         |                                                  ^~
2021-07-12T21:48:55,045   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -o build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering_64.cpython-39-arm-linux-gnueabihf.so
2021-07-12T21:48:55,205   building 'bhmm._external.clustering.kmeans_clustering_32' extension
2021-07-12T21:48:55,205   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/clustering.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o -std=c99 -O3
2021-07-12T21:48:55,710   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:55,711                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:55,711                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:55,711                    from ./bhmm/_external/clustering/include/clustering.h:41,
2021-07-12T21:48:55,711                    from ./bhmm/_external/clustering/src/clustering.c:27:
2021-07-12T21:48:55,711   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:55,712      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:55,712         |  ^~~~~~~
2021-07-12T21:48:55,942   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/kmeans.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -std=c99 -O3
2021-07-12T21:48:56,322   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T21:48:56,323                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T21:48:56,323                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T21:48:56,323                    from ./bhmm/_external/clustering/include/clustering.h:41,
2021-07-12T21:48:56,323                    from ./bhmm/_external/clustering/src/kmeans.c:27:
2021-07-12T21:48:56,323   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T21:48:56,323      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T21:48:56,324         |  ^~~~~~~
2021-07-12T21:48:56,361   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-12T21:48:56,361   ./bhmm/_external/clustering/src/kmeans.c:58:38: warning: variable ‘py_res’ set but not used [-Wunused-but-set-variable]
2021-07-12T21:48:56,361      58 |     PyObject *py_centers, *py_item, *py_res;
2021-07-12T21:48:56,362         |                                      ^~~~~~
2021-07-12T21:48:56,381   At top level:
2021-07-12T21:48:56,382   ./bhmm/_external/clustering/src/kmeans.c:555:1: warning: ‘error_out’ defined but not used [-Wunused-function]
2021-07-12T21:48:56,382     555 | error_out(PyObject *m) {
2021-07-12T21:48:56,382         | ^~~~~~~~~
2021-07-12T21:48:56,510   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-12T21:48:56,511   ./bhmm/_external/clustering/src/kmeans.c:186:50: warning: ‘closest_center_index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-12T21:48:56,511     186 |          new_centers[closest_center_index*dim+j] += chunk[i*dim+j];
2021-07-12T21:48:56,511         |                                                  ^~
2021-07-12T21:48:57,101   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -o build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering_32.cpython-39-arm-linux-gnueabihf.so
2021-07-12T21:48:57,270   installing to build/bdist.linux-armv7l/wheel
2021-07-12T21:48:57,270   running install
2021-07-12T21:48:57,271   running install_lib
2021-07-12T21:48:57,277   creating build/bdist.linux-armv7l
2021-07-12T21:48:57,277   creating build/bdist.linux-armv7l/wheel
2021-07-12T21:48:57,279   creating build/bdist.linux-armv7l/wheel/bhmm
2021-07-12T21:48:57,281   creating build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-12T21:48:57,283   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-12T21:48:57,284   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-12T21:48:57,286   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-12T21:48:57,288   copying build/lib.linux-armv7l-3.9/bhmm/hidden/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-12T21:48:57,290   copying build/lib.linux-armv7l-3.9/bhmm/hidden/api.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-12T21:48:57,294   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-12T21:48:57,294   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-12T21:48:57,297   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-12T21:48:57,311   creating build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-12T21:48:57,311   copying build/lib.linux-armv7l-3.9/bhmm/estimators/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-12T21:48:57,314   copying build/lib.linux-armv7l-3.9/bhmm/estimators/bayesian_sampling.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-12T21:48:57,317   copying build/lib.linux-armv7l-3.9/bhmm/estimators/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-12T21:48:57,320   copying build/lib.linux-armv7l-3.9/bhmm/estimators/_tmatrix_disconnected.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-12T21:48:57,323   copying build/lib.linux-armv7l-3.9/bhmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-12T21:48:57,326   creating build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,327   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,329   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,331   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_output_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,334   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,336   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init_discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,339   copying build/lib.linux-armv7l-3.9/bhmm/tests/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,342   creating build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-12T21:48:57,343   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_P.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-12T21:48:57,346   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_energy.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-12T21:48:57,348   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-12T21:48:57,359   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm_patho.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,362   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,364   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,367   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm_patho.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,369   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,372   copying build/lib.linux-armv7l-3.9/bhmm/tests/benchmark_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-12T21:48:57,375   copying build/lib.linux-armv7l-3.9/bhmm/version.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-12T21:48:57,378   creating build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-12T21:48:57,379   copying build/lib.linux-armv7l-3.9/bhmm/output_models/outputmodel.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-12T21:48:57,382   copying build/lib.linux-armv7l-3.9/bhmm/output_models/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-12T21:48:57,384   copying build/lib.linux-armv7l-3.9/bhmm/output_models/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-12T21:48:57,387   copying build/lib.linux-armv7l-3.9/bhmm/output_models/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-12T21:48:57,390   creating build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-12T21:48:57,391   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-12T21:48:57,393   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-12T21:48:57,404   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-12T21:48:57,411   creating build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-12T21:48:57,412   copying build/lib.linux-armv7l-3.9/bhmm/_external/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-12T21:48:57,414   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-12T21:48:57,415   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/base.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-12T21:48:57,418   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-12T21:48:57,420   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-12T21:48:57,421   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/gmm.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-12T21:48:57,425   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-12T21:48:57,427   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/utils.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-12T21:48:57,431   creating build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-12T21:48:57,432   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-12T21:48:57,434   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering_32.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-12T21:48:57,438   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering_64.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-12T21:48:57,443   creating build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,444   copying build/lib.linux-armv7l-3.9/bhmm/util/analysis.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,447   copying build/lib.linux-armv7l-3.9/bhmm/util/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,449   copying build/lib.linux-armv7l-3.9/bhmm/util/config.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,451   copying build/lib.linux-armv7l-3.9/bhmm/util/statistics.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,454   copying build/lib.linux-armv7l-3.9/bhmm/util/types.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,456   copying build/lib.linux-armv7l-3.9/bhmm/util/logger.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,458   copying build/lib.linux-armv7l-3.9/bhmm/util/testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-12T21:48:57,462   creating build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-12T21:48:57,463   copying build/lib.linux-armv7l-3.9/bhmm/init/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-12T21:48:57,465   copying build/lib.linux-armv7l-3.9/bhmm/init/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-12T21:48:57,468   copying build/lib.linux-armv7l-3.9/bhmm/init/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-12T21:48:57,471   copying build/lib.linux-armv7l-3.9/bhmm/api.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-12T21:48:57,474   creating build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-12T21:48:57,475   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-12T21:48:57,479   copying build/lib.linux-armv7l-3.9/bhmm/hmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-12T21:48:57,481   copying build/lib.linux-armv7l-3.9/bhmm/hmm/gaussian_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-12T21:48:57,483   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_sampled_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-12T21:48:57,486   copying build/lib.linux-armv7l-3.9/bhmm/hmm/discrete_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-12T21:48:57,488   running install_egg_info
2021-07-12T21:48:57,510   running egg_info
2021-07-12T21:48:57,511   writing bhmm.egg-info/PKG-INFO
2021-07-12T21:48:57,513   writing dependency_links to bhmm.egg-info/dependency_links.txt
2021-07-12T21:48:57,515   writing requirements to bhmm.egg-info/requires.txt
2021-07-12T21:48:57,516   writing top-level names to bhmm.egg-info/top_level.txt
2021-07-12T21:48:57,577   reading manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-12T21:48:57,583   reading manifest template 'MANIFEST.in'
2021-07-12T21:48:57,722   writing manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-12T21:48:57,724   Copying bhmm.egg-info to build/bdist.linux-armv7l/wheel/bhmm-0.6.2-py3.9.egg-info
2021-07-12T21:48:57,740   running install_scripts
2021-07-12T21:48:57,791   creating build/bdist.linux-armv7l/wheel/bhmm-0.6.2.dist-info/WHEEL
2021-07-12T21:48:57,794   creating '/tmp/pip-wheel-oe2czpr2/bhmm-0.6.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T21:48:57,797   adding 'bhmm/__init__.py'
2021-07-12T21:48:57,800   adding 'bhmm/api.py'
2021-07-12T21:48:57,801   adding 'bhmm/version.py'
2021-07-12T21:48:57,803   adding 'bhmm/_external/__init__.py'
2021-07-12T21:48:57,805   adding 'bhmm/_external/clustering/__init__.py'
2021-07-12T21:48:57,820   adding 'bhmm/_external/clustering/kmeans_clustering_32.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T21:48:57,835   adding 'bhmm/_external/clustering/kmeans_clustering_64.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T21:48:57,837   adding 'bhmm/_external/sklearn/__init__.py'
2021-07-12T21:48:57,839   adding 'bhmm/_external/sklearn/base.py'
2021-07-12T21:48:57,841   adding 'bhmm/_external/sklearn/utils.py'
2021-07-12T21:48:57,843   adding 'bhmm/_external/sklearn/mixture/__init__.py'
2021-07-12T21:48:57,847   adding 'bhmm/_external/sklearn/mixture/gmm.py'
2021-07-12T21:48:57,849   adding 'bhmm/estimators/__init__.py'
2021-07-12T21:48:57,851   adding 'bhmm/estimators/_tmatrix_disconnected.py'
2021-07-12T21:48:57,853   adding 'bhmm/estimators/bayesian_sampling.py'
2021-07-12T21:48:57,856   adding 'bhmm/estimators/maximum_likelihood.py'
2021-07-12T21:48:57,858   adding 'bhmm/hidden/__init__.py'
2021-07-12T21:48:57,860   adding 'bhmm/hidden/api.py'
2021-07-12T21:48:57,862   adding 'bhmm/hidden/impl_c/__init__.py'
2021-07-12T21:48:57,954   adding 'bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T21:48:57,959   adding 'bhmm/hidden/impl_python/__init__.py'
2021-07-12T21:48:57,961   adding 'bhmm/hidden/impl_python/hidden.py'
2021-07-12T21:48:57,963   adding 'bhmm/hmm/__init__.py'
2021-07-12T21:48:57,964   adding 'bhmm/hmm/discrete_hmm.py'
2021-07-12T21:48:57,966   adding 'bhmm/hmm/gaussian_hmm.py'
2021-07-12T21:48:57,968   adding 'bhmm/hmm/generic_hmm.py'
2021-07-12T21:48:57,970   adding 'bhmm/hmm/generic_sampled_hmm.py'
2021-07-12T21:48:57,972   adding 'bhmm/init/__init__.py'
2021-07-12T21:48:57,975   adding 'bhmm/init/discrete.py'
2021-07-12T21:48:57,976   adding 'bhmm/init/gaussian.py'
2021-07-12T21:48:57,978   adding 'bhmm/output_models/__init__.py'
2021-07-12T21:48:57,981   adding 'bhmm/output_models/discrete.py'
2021-07-12T21:48:57,983   adding 'bhmm/output_models/gaussian.py'
2021-07-12T21:48:57,985   adding 'bhmm/output_models/outputmodel.py'
2021-07-12T21:48:57,987   adding 'bhmm/output_models/impl_c/__init__.py'
2021-07-12T21:48:58,020   adding 'bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T21:48:58,094   adding 'bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T21:48:58,099   adding 'bhmm/tests/__init__.py'
2021-07-12T21:48:58,100   adding 'bhmm/tests/benchmark_hidden.py'
2021-07-12T21:48:58,102   adding 'bhmm/tests/test_bhmm.py'
2021-07-12T21:48:58,103   adding 'bhmm/tests/test_bhmm_patho.py'
2021-07-12T21:48:58,105   adding 'bhmm/tests/test_hidden.py'
2021-07-12T21:48:58,106   adding 'bhmm/tests/test_hmm.py'
2021-07-12T21:48:58,108   adding 'bhmm/tests/test_init_discrete.py'
2021-07-12T21:48:58,110   adding 'bhmm/tests/test_init_gaussian.py'
2021-07-12T21:48:58,111   adding 'bhmm/tests/test_mlhmm.py'
2021-07-12T21:48:58,112   adding 'bhmm/tests/test_mlhmm_patho.py'
2021-07-12T21:48:58,114   adding 'bhmm/tests/test_output_gaussian.py'
2021-07-12T21:48:58,115   adding 'bhmm/tests/test_testsystems.py'
2021-07-12T21:48:58,118   adding 'bhmm/tests/data/2well_P.dat'
2021-07-12T21:48:58,119   adding 'bhmm/tests/data/2well_energy.dat'
2021-07-12T21:48:58,197   adding 'bhmm/tests/data/2well_traj_100K.dat'
2021-07-12T21:48:58,201   adding 'bhmm/util/__init__.py'
2021-07-12T21:48:58,203   adding 'bhmm/util/analysis.py'
2021-07-12T21:48:58,204   adding 'bhmm/util/config.py'
2021-07-12T21:48:58,205   adding 'bhmm/util/logger.py'
2021-07-12T21:48:58,207   adding 'bhmm/util/statistics.py'
2021-07-12T21:48:58,209   adding 'bhmm/util/testsystems.py'
2021-07-12T21:48:58,211   adding 'bhmm/util/types.py'
2021-07-12T21:48:58,213   adding 'bhmm-0.6.2.dist-info/METADATA'
2021-07-12T21:48:58,214   adding 'bhmm-0.6.2.dist-info/WHEEL'
2021-07-12T21:48:58,215   adding 'bhmm-0.6.2.dist-info/top_level.txt'
2021-07-12T21:48:58,216   adding 'bhmm-0.6.2.dist-info/RECORD'
2021-07-12T21:48:58,228   removing build/bdist.linux-armv7l/wheel
2021-07-12T21:48:58,413   Building wheel for bhmm (setup.py): finished with status 'done'
2021-07-12T21:48:58,430   Created wheel for bhmm: filename=bhmm-0.6.2-cp39-cp39-linux_armv7l.whl size=583749 sha256=cfa3bbe7b843bd1761bd1e7931feba48bba77a36fea05875588de54959393883
2021-07-12T21:48:58,430   Stored in directory: /tmp/pip-ephem-wheel-cache-k6vv3s3f/wheels/8f/19/71/75c5b8b9416202fe4f48f2098e6b4009e45c8789c63166cb1d
2021-07-12T21:48:58,462 Successfully built bhmm
2021-07-12T21:48:58,500 Removed build tracker: '/tmp/pip-req-tracker-qu_3kdo6'