2021-07-12T22:57:45,329 Created temporary directory: /tmp/pip-ephem-wheel-cache-og8aee_n 2021-07-12T22:57:45,332 Created temporary directory: /tmp/pip-req-tracker-m1xlw5k3 2021-07-12T22:57:45,332 Initialized build tracking at /tmp/pip-req-tracker-m1xlw5k3 2021-07-12T22:57:45,332 Created build tracker: /tmp/pip-req-tracker-m1xlw5k3 2021-07-12T22:57:45,333 Entered build tracker: /tmp/pip-req-tracker-m1xlw5k3 2021-07-12T22:57:45,333 Created temporary directory: /tmp/pip-wheel-_vzg9oow 2021-07-12T22:57:45,362 1 location(s) to search for versions of pybigwig: 2021-07-12T22:57:45,362 * https://pypi.org/simple/pybigwig/ 2021-07-12T22:57:45,362 Fetching project page and analyzing links: https://pypi.org/simple/pybigwig/ 2021-07-12T22:57:45,363 Getting page https://pypi.org/simple/pybigwig/ 2021-07-12T22:57:45,365 Found index url https://pypi.org/simple 2021-07-12T22:57:45,553 Found link 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https://files.pythonhosted.org/packages/48/f5/972aad9b52ed8b4d3e651d5b766a9aa29c62e7052919970e1b61b40fa9d7/pyBigWig-0.3.9.tar.gz#sha256=34306213414a8d8974c4ffaac153b3d0a67ce0183514a93aede6c3d33b6f7947 (from https://pypi.org/simple/pybigwig/), version: 0.3.9 2021-07-12T22:57:45,560 Found link https://files.pythonhosted.org/packages/9b/a2/322da414cdff7d3da7084388d2e65c6136722b744290619689d70e625058/pyBigWig-0.3.10.tar.gz#sha256=a409d67a744e099260c0d17c7b98a4250f41de0daa9ef32bf7512b0cd35f0039 (from https://pypi.org/simple/pybigwig/), version: 0.3.10 2021-07-12T22:57:45,560 Found link https://files.pythonhosted.org/packages/7b/b7/e135efa69cd146d22920c196e4575d2ff5a0b19c8f3a29634f5b4c639764/pyBigWig-0.3.11.tar.gz#sha256=408ebb40f01c72c77adde4d785a18dabc9abbe9020024e4296b8f6a51a662ae7 (from https://pypi.org/simple/pybigwig/), version: 0.3.11 2021-07-12T22:57:45,560 Found link https://files.pythonhosted.org/packages/d5/0d/8e2a1edb9524790c6a4d0b70bc800a8e4afee1bc7bdd048c54b8d9cf1c32/pyBigWig-0.3.12.tar.gz#sha256=e01991790ece496bf6d3f00778dcfb136dd9ca0fd28acc1b3fb43051ad9b8403 (from https://pypi.org/simple/pybigwig/), version: 0.3.12 2021-07-12T22:57:45,560 Found link https://files.pythonhosted.org/packages/5c/9c/2e01d04b6fd31c1e09537c8f51410123c087da4974bdb0fcdb7ec25dab62/pyBigWig-0.3.13.tar.gz#sha256=c65cb9ccd78a4ede00c3209579173e4f7e67598daf6dc079676a0e8982163f5b (from https://pypi.org/simple/pybigwig/), version: 0.3.13 2021-07-12T22:57:45,561 Found link https://files.pythonhosted.org/packages/b2/5f/31086a89f067e0f0ad3b5b039e1d99ed7f4e5e7bc0fe156aef724a45ed06/pyBigWig-0.3.14.tar.gz#sha256=28bed8b4491df8704d54247d5d6e2d77a9b6fe4be6a77b8246e0ee3fb531c206 (from https://pypi.org/simple/pybigwig/), version: 0.3.14 2021-07-12T22:57:45,561 Found link https://files.pythonhosted.org/packages/99/c0/c53056f4496b2bacfaa014f0f3fc74934827cd4ce933f94fe870eaf65181/pyBigWig-0.3.15.tar.gz#sha256=7e2c85b9ca826007a6c56907343b31fb86058a3b8d0bc9138c9de0a759d02e82 (from https://pypi.org/simple/pybigwig/), version: 0.3.15 2021-07-12T22:57:45,561 Found link https://files.pythonhosted.org/packages/67/c8/741cca63e6a8688ef22a605bb06cc849fc57df419027013f2d1181f184f8/pyBigWig-0.3.16.tar.gz#sha256=1ec93c67089147cc918c7dbd69ff3cfbe0648e5b7b2e809c51f70daf668215d1 (from https://pypi.org/simple/pybigwig/), version: 0.3.16 2021-07-12T22:57:45,562 Found link https://files.pythonhosted.org/packages/b0/e2/cf945d541a10bb9c675f986d5bf0b0268544721054d17cc6260cfcfb3685/pyBigWig-0.3.17.tar.gz#sha256=41f64f802689ed72e15296a21a4b7abd3904780b2e4f8146fd29098fc836fd94 (from https://pypi.org/simple/pybigwig/), version: 0.3.17 2021-07-12T22:57:45,562 Found link https://files.pythonhosted.org/packages/23/29/b51c3580427dd66dfecd63ffbe2dfa37175d3c898b289a3f27def1be34c0/pyBigWig-0.3.18.tar.gz#sha256=4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc (from https://pypi.org/simple/pybigwig/), version: 0.3.18 2021-07-12T22:57:45,562 Skipping link: not a file: https://pypi.org/simple/pybigwig/ 2021-07-12T22:57:45,584 Given no hashes to check 1 links for project 'pybigwig': discarding no candidates 2021-07-12T22:57:45,603 Collecting pybigwig==0.3.10 2021-07-12T22:57:45,605 Created temporary directory: /tmp/pip-unpack-y0d3r64t 2021-07-12T22:57:45,788 Downloading pyBigWig-0.3.10.tar.gz (64 kB) 2021-07-12T22:57:45,880 Added pybigwig==0.3.10 from https://files.pythonhosted.org/packages/9b/a2/322da414cdff7d3da7084388d2e65c6136722b744290619689d70e625058/pyBigWig-0.3.10.tar.gz#sha256=a409d67a744e099260c0d17c7b98a4250f41de0daa9ef32bf7512b0cd35f0039 to build tracker '/tmp/pip-req-tracker-m1xlw5k3' 2021-07-12T22:57:45,881 Running setup.py (path:/tmp/pip-wheel-_vzg9oow/pybigwig_7923d21cae1d4a4dac64eb79a4a3b11d/setup.py) egg_info for package pybigwig 2021-07-12T22:57:45,882 Created temporary directory: /tmp/pip-pip-egg-info-np_02d4r 2021-07-12T22:57:45,882 Running command python setup.py egg_info 2021-07-12T22:57:46,936 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-12T22:57:46,936 warnings.warn( 2021-07-12T22:57:46,944 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier' 2021-07-12T22:57:46,945 warnings.warn(msg) 2021-07-12T22:57:47,049 running egg_info 2021-07-12T22:57:47,052 creating /tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info 2021-07-12T22:57:47,053 writing /tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/PKG-INFO 2021-07-12T22:57:47,055 writing dependency_links to /tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/dependency_links.txt 2021-07-12T22:57:47,057 writing requirements to /tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/requires.txt 2021-07-12T22:57:47,058 writing top-level names to /tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/top_level.txt 2021-07-12T22:57:47,059 writing manifest file '/tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/SOURCES.txt' 2021-07-12T22:57:47,412 reading manifest file '/tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/SOURCES.txt' 2021-07-12T22:57:47,413 reading manifest template 'MANIFEST.in' 2021-07-12T22:57:47,417 warning: no previously-included files found matching 'pyBigWig.egg-info/*' 2021-07-12T22:57:47,417 adding license file 'LICENSE.txt' 2021-07-12T22:57:47,420 writing manifest file '/tmp/pip-pip-egg-info-np_02d4r/pyBigWig.egg-info/SOURCES.txt' 2021-07-12T22:57:47,545 Source in /tmp/pip-wheel-_vzg9oow/pybigwig_7923d21cae1d4a4dac64eb79a4a3b11d has version 0.3.10, which satisfies requirement pybigwig==0.3.10 from https://files.pythonhosted.org/packages/9b/a2/322da414cdff7d3da7084388d2e65c6136722b744290619689d70e625058/pyBigWig-0.3.10.tar.gz#sha256=a409d67a744e099260c0d17c7b98a4250f41de0daa9ef32bf7512b0cd35f0039 2021-07-12T22:57:47,546 Removed pybigwig==0.3.10 from https://files.pythonhosted.org/packages/9b/a2/322da414cdff7d3da7084388d2e65c6136722b744290619689d70e625058/pyBigWig-0.3.10.tar.gz#sha256=a409d67a744e099260c0d17c7b98a4250f41de0daa9ef32bf7512b0cd35f0039 from build tracker '/tmp/pip-req-tracker-m1xlw5k3' 2021-07-12T22:57:47,550 Created temporary directory: /tmp/pip-unpack-k2i0t5_u 2021-07-12T22:57:47,550 Building wheels for collected packages: pybigwig 2021-07-12T22:57:47,555 Created temporary directory: /tmp/pip-wheel-el4oelsp 2021-07-12T22:57:47,555 Building wheel for pybigwig (setup.py): started 2021-07-12T22:57:47,556 Destination directory: /tmp/pip-wheel-el4oelsp 2021-07-12T22:57:47,556 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_vzg9oow/pybigwig_7923d21cae1d4a4dac64eb79a4a3b11d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_vzg9oow/pybigwig_7923d21cae1d4a4dac64eb79a4a3b11d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-el4oelsp 2021-07-12T22:57:48,599 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-12T22:57:48,600 warnings.warn( 2021-07-12T22:57:48,608 /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'classifier' 2021-07-12T22:57:48,608 warnings.warn(msg) 2021-07-12T22:57:48,727 running bdist_wheel 2021-07-12T22:57:48,931 running build 2021-07-12T22:57:48,932 running build_py 2021-07-12T22:57:49,068 creating build 2021-07-12T22:57:49,068 creating build/lib.linux-armv7l-3.9 2021-07-12T22:57:49,069 creating build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-12T22:57:49,070 copying pyBigWigTest/test.py -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-12T22:57:49,072 copying pyBigWigTest/__init__.py -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-12T22:57:49,073 running egg_info 2021-07-12T22:57:49,087 writing pyBigWig.egg-info/PKG-INFO 2021-07-12T22:57:49,088 writing dependency_links to pyBigWig.egg-info/dependency_links.txt 2021-07-12T22:57:49,090 writing requirements to pyBigWig.egg-info/requires.txt 2021-07-12T22:57:49,091 writing top-level names to pyBigWig.egg-info/top_level.txt 2021-07-12T22:57:49,097 reading manifest file 'pyBigWig.egg-info/SOURCES.txt' 2021-07-12T22:57:49,099 reading manifest template 'MANIFEST.in' 2021-07-12T22:57:49,103 adding license file 'LICENSE.txt' 2021-07-12T22:57:49,106 writing manifest file 'pyBigWig.egg-info/SOURCES.txt' 2021-07-12T22:57:49,108 copying pyBigWigTest/test.bigBed -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-12T22:57:49,111 copying pyBigWigTest/test.bw -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-12T22:57:49,115 running build_ext 2021-07-12T22:57:49,118 building 'pyBigWig' extension 2021-07-12T22:57:49,226 Warning: Can't read registry to find the necessary compiler setting 2021-07-12T22:57:49,226 Make sure that Python modules winreg, win32api or win32con are installed. 2021-07-12T22:57:49,357 C compiler: arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 2021-07-12T22:57:49,358 creating build/temp.linux-armv7l-3.9 2021-07-12T22:57:49,358 creating build/temp.linux-armv7l-3.9/libBigWig 2021-07-12T22:57:49,359 compile options: '-DWITHNUMPY -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -IlibBigWig -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c' 2021-07-12T22:57:49,381 arm-linux-gnueabihf-gcc: libBigWig/bwRead.c 2021-07-12T22:57:49,382 arm-linux-gnueabihf-gcc: libBigWig/bwWrite.c 2021-07-12T22:57:49,387 arm-linux-gnueabihf-gcc: libBigWig/bwStats.c 2021-07-12T22:57:49,397 arm-linux-gnueabihf-gcc: libBigWig/bwValues.c 2021-07-12T22:57:50,326 arm-linux-gnueabihf-gcc: libBigWig/io.c 2021-07-12T22:57:50,503 arm-linux-gnueabihf-gcc: pyBigWig.c 2021-07-12T22:57:50,578 libBigWig/io.c: In function ‘urlFetchData’: 2021-07-12T22:57:50,579 libBigWig/io.c:33:22: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-12T22:57:50,579 33 | sprintf(range,"%lu-%lu", URL->filePos, URL->filePos+bufSize-1); 2021-07-12T22:57:50,580 | ~~^ ~~~~~~~~~~~~ 2021-07-12T22:57:50,580 | | | 2021-07-12T22:57:50,580 | | size_t {aka unsigned int} 2021-07-12T22:57:50,580 | long unsigned int 2021-07-12T22:57:50,581 | %u 2021-07-12T22:57:50,590 libBigWig/io.c: In function ‘urlSeek’: 2021-07-12T22:57:50,591 libBigWig/io.c:141:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-12T22:57:50,591 141 | sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1); 2021-07-12T22:57:50,591 | ~~^ ~~~ 2021-07-12T22:57:50,591 | | | 2021-07-12T22:57:50,592 | | size_t {aka unsigned int} 2021-07-12T22:57:50,592 | long unsigned int 2021-07-12T22:57:50,592 | %u 2021-07-12T22:57:50,593 libBigWig/io.c:141:34: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-12T22:57:50,593 141 | sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1); 2021-07-12T22:57:50,594 | ~~^ ~~~~~~~~~~~~~~~~~~ 2021-07-12T22:57:50,594 | | | 2021-07-12T22:57:50,594 | long unsigned int size_t {aka unsigned int} 2021-07-12T22:57:50,594 | %u 2021-07-12T22:57:50,624 libBigWig/io.c: In function ‘urlOpen’: 2021-07-12T22:57:50,625 libBigWig/io.c:223:33: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-12T22:57:50,625 223 | sprintf(range, "0-%lu", URL->bufSize-1); 2021-07-12T22:57:50,626 | ~~^ ~~~~~~~~~~~~~~ 2021-07-12T22:57:50,626 | | | 2021-07-12T22:57:50,626 | | size_t {aka unsigned int} 2021-07-12T22:57:50,626 | long unsigned int 2021-07-12T22:57:50,627 | %u 2021-07-12T22:57:51,083 pyBigWig.c: In function ‘Numeric2Uint’: 2021-07-12T22:57:51,084 pyBigWig.c:596:10: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-12T22:57:51,084 596 | if(l > 0xFFFFFFFF) { 2021-07-12T22:57:51,085 | ^ 2021-07-12T22:57:51,086 pyBigWig.c: In function ‘pyBwAddHeader’: 2021-07-12T22:57:51,088 pyBigWig.c:681:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-12T22:57:51,088 681 | if(zoomTmp > 0xFFFFFFFF) { 2021-07-12T22:57:51,088 | ^ 2021-07-12T22:57:51,103 pyBigWig.c: In function ‘canAppend’: 2021-07-12T22:57:51,103 pyBigWig.c:911:11: warning: unused variable ‘foo’ [-Wunused-variable] 2021-07-12T22:57:51,103 911 | void *foo; 2021-07-12T22:57:51,103 | ^~~ 2021-07-12T22:57:51,106 pyBigWig.c: In function ‘PyAddIntervals’: 2021-07-12T22:57:51,106 pyBigWig.c:1060:19: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T22:57:51,106 1060 | for(i=0; i build/bdist.linux-armv7l/wheel 2021-07-12T22:57:53,371 creating build/bdist.linux-armv7l/wheel/pyBigWigTest 2021-07-12T22:57:53,372 copying build/lib.linux-armv7l-3.9/pyBigWigTest/test.py -> build/bdist.linux-armv7l/wheel/pyBigWigTest 2021-07-12T22:57:53,375 copying build/lib.linux-armv7l-3.9/pyBigWigTest/test.bw -> build/bdist.linux-armv7l/wheel/pyBigWigTest 2021-07-12T22:57:53,378 copying build/lib.linux-armv7l-3.9/pyBigWigTest/test.bigBed -> build/bdist.linux-armv7l/wheel/pyBigWigTest 2021-07-12T22:57:53,381 copying build/lib.linux-armv7l-3.9/pyBigWigTest/__init__.py -> build/bdist.linux-armv7l/wheel/pyBigWigTest 2021-07-12T22:57:53,382 running install_egg_info 2021-07-12T22:57:53,386 Copying pyBigWig.egg-info to build/bdist.linux-armv7l/wheel/pyBigWig-0.3.10-py3.9.egg-info 2021-07-12T22:57:53,401 running install_scripts 2021-07-12T22:57:53,421 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T22:57:53,426 creating build/bdist.linux-armv7l/wheel/pyBigWig-0.3.10.dist-info/WHEEL 2021-07-12T22:57:53,429 creating '/tmp/pip-wheel-el4oelsp/pyBigWig-0.3.10-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T22:57:53,532 adding 'pyBigWig.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T22:57:53,538 adding 'pyBigWigTest/__init__.py' 2021-07-12T22:57:53,540 adding 'pyBigWigTest/test.bigBed' 2021-07-12T22:57:53,542 adding 'pyBigWigTest/test.bw' 2021-07-12T22:57:53,544 adding 'pyBigWigTest/test.py' 2021-07-12T22:57:53,545 adding 'pyBigWig-0.3.10.dist-info/LICENSE.txt' 2021-07-12T22:57:53,546 adding 'pyBigWig-0.3.10.dist-info/METADATA' 2021-07-12T22:57:53,547 adding 'pyBigWig-0.3.10.dist-info/WHEEL' 2021-07-12T22:57:53,548 adding 'pyBigWig-0.3.10.dist-info/top_level.txt' 2021-07-12T22:57:53,549 adding 'pyBigWig-0.3.10.dist-info/RECORD' 2021-07-12T22:57:53,553 removing build/bdist.linux-armv7l/wheel 2021-07-12T22:57:53,712 Building wheel for pybigwig (setup.py): finished with status 'done' 2021-07-12T22:57:53,716 Created wheel for pybigwig: filename=pyBigWig-0.3.10-cp39-cp39-linux_armv7l.whl size=190150 sha256=9bb7e2f86bdd99a431f0d85cc67541631c8cd87a23dc0ff2027820593fca6c68 2021-07-12T22:57:53,717 Stored in directory: /tmp/pip-ephem-wheel-cache-og8aee_n/wheels/b8/a3/79/18678aebfe32ddc720094bda736deb50312e7517213e2cf27d 2021-07-12T22:57:53,726 Successfully built pybigwig 2021-07-12T22:57:53,736 Removed build tracker: '/tmp/pip-req-tracker-m1xlw5k3'