2021-07-13T02:52:57,274 Created temporary directory: /tmp/pip-ephem-wheel-cache-prsemcpm 2021-07-13T02:52:57,277 Created temporary directory: /tmp/pip-req-tracker-9lvbwark 2021-07-13T02:52:57,278 Initialized build tracking at /tmp/pip-req-tracker-9lvbwark 2021-07-13T02:52:57,278 Created build tracker: /tmp/pip-req-tracker-9lvbwark 2021-07-13T02:52:57,278 Entered build tracker: /tmp/pip-req-tracker-9lvbwark 2021-07-13T02:52:57,279 Created temporary directory: /tmp/pip-wheel-eq13biim 2021-07-13T02:52:57,308 1 location(s) to search for versions of genomelake: 2021-07-13T02:52:57,308 * https://pypi.org/simple/genomelake/ 2021-07-13T02:52:57,309 Fetching project page and analyzing links: https://pypi.org/simple/genomelake/ 2021-07-13T02:52:57,309 Getting page https://pypi.org/simple/genomelake/ 2021-07-13T02:52:57,311 Found index url https://pypi.org/simple 2021-07-13T02:52:57,401 Found link https://files.pythonhosted.org/packages/61/ff/e44bf090afa15196ab8b561fa006df736d03a9112614f613f097f5232b20/genomelake-0.1.1.tar.gz#sha256=bd43c5feb0850cb645753235a7aa42672bbf019b2a71aef25ea69ebc59aac4c6 (from https://pypi.org/simple/genomelake/), version: 0.1.1 2021-07-13T02:52:57,401 Found link https://files.pythonhosted.org/packages/7f/a4/3d4211b0cf4ef57bb2103b37cfe8d0a4484f77d45bf5969fc02d2521fc4a/genomelake-0.1.2.tar.gz#sha256=26667a7e3b01cfb65952ab128569d2302102bea96f1a63f2f26415f51ace9be1 (from https://pypi.org/simple/genomelake/), version: 0.1.2 2021-07-13T02:52:57,402 Found link https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 (from https://pypi.org/simple/genomelake/), version: 0.1.3 2021-07-13T02:52:57,402 Found link https://files.pythonhosted.org/packages/07/f9/bfefaffe5478615f126704c385d0f38383d9dd912a65fb090eced83ba01e/genomelake-0.1.4.tar.gz#sha256=fcec11be1cce15f08de0df34916f946a9470ed911050f5ab7098a1279e892253 (from https://pypi.org/simple/genomelake/), version: 0.1.4 2021-07-13T02:52:57,402 Skipping link: not a file: https://pypi.org/simple/genomelake/ 2021-07-13T02:52:57,420 Given no hashes to check 1 links for project 'genomelake': discarding no candidates 2021-07-13T02:52:57,439 Collecting genomelake==0.1.3 2021-07-13T02:52:57,441 Created temporary directory: /tmp/pip-unpack-qc49givs 2021-07-13T02:52:57,920 Downloading genomelake-0.1.3.tar.gz (88 kB) 2021-07-13T02:52:58,013 Added genomelake==0.1.3 from https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 to build tracker '/tmp/pip-req-tracker-9lvbwark' 2021-07-13T02:52:58,014 Running setup.py (path:/tmp/pip-wheel-eq13biim/genomelake_e9801479c88d4ce2adc5bb5002698048/setup.py) egg_info for package genomelake 2021-07-13T02:52:58,015 Created temporary directory: /tmp/pip-pip-egg-info-c_fjg94q 2021-07-13T02:52:58,015 Running command python setup.py egg_info 2021-07-13T02:52:58,934 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T02:52:58,935 warnings.warn( 2021-07-13T02:52:59,046 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T02:52:59,047 warnings.warn( 2021-07-13T02:52:59,069 running egg_info 2021-07-13T02:52:59,072 creating /tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info 2021-07-13T02:52:59,073 writing /tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/PKG-INFO 2021-07-13T02:52:59,075 writing dependency_links to /tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/dependency_links.txt 2021-07-13T02:52:59,078 writing requirements to /tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/requires.txt 2021-07-13T02:52:59,079 writing top-level names to /tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/top_level.txt 2021-07-13T02:52:59,081 writing manifest file '/tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/SOURCES.txt' 2021-07-13T02:52:59,417 reading manifest file '/tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/SOURCES.txt' 2021-07-13T02:52:59,419 reading manifest template 'MANIFEST.in' 2021-07-13T02:52:59,421 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-13T02:52:59,422 warning: no previously-included files matching '*.py[co]' found under directory '*' 2021-07-13T02:52:59,422 adding license file 'LICENSE' 2021-07-13T02:52:59,423 writing manifest file '/tmp/pip-pip-egg-info-c_fjg94q/genomelake.egg-info/SOURCES.txt' 2021-07-13T02:52:59,497 Source in /tmp/pip-wheel-eq13biim/genomelake_e9801479c88d4ce2adc5bb5002698048 has version 0.1.3, which satisfies requirement genomelake==0.1.3 from https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 2021-07-13T02:52:59,498 Removed genomelake==0.1.3 from https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 from build tracker '/tmp/pip-req-tracker-9lvbwark' 2021-07-13T02:52:59,502 Created temporary directory: /tmp/pip-unpack-gsokai7v 2021-07-13T02:52:59,503 Building wheels for collected packages: genomelake 2021-07-13T02:52:59,507 Created temporary directory: /tmp/pip-wheel-quhr48r0 2021-07-13T02:52:59,508 Building wheel for genomelake (setup.py): started 2021-07-13T02:52:59,508 Destination directory: /tmp/pip-wheel-quhr48r0 2021-07-13T02:52:59,509 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-eq13biim/genomelake_e9801479c88d4ce2adc5bb5002698048/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-eq13biim/genomelake_e9801479c88d4ce2adc5bb5002698048/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-quhr48r0 2021-07-13T02:53:00,443 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T02:53:00,443 warnings.warn( 2021-07-13T02:53:00,555 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T02:53:00,555 warnings.warn( 2021-07-13T02:53:00,599 running bdist_wheel 2021-07-13T02:53:00,760 running build 2021-07-13T02:53:00,761 running build_py 2021-07-13T02:53:00,900 creating build 2021-07-13T02:53:00,900 creating build/lib.linux-armv7l-3.9 2021-07-13T02:53:00,901 creating build/lib.linux-armv7l-3.9/genomelake 2021-07-13T02:53:00,903 copying genomelake/backend.py -> build/lib.linux-armv7l-3.9/genomelake 2021-07-13T02:53:00,906 copying genomelake/extractors.py -> build/lib.linux-armv7l-3.9/genomelake 2021-07-13T02:53:00,908 copying genomelake/__init__.py -> build/lib.linux-armv7l-3.9/genomelake 2021-07-13T02:53:00,910 running build_ext 2021-07-13T02:53:00,916 skipping 'genomelake/util.c' Cython extension (up-to-date) 2021-07-13T02:53:00,916 building 'genomelake.util' extension 2021-07-13T02:53:00,917 creating build/temp.linux-armv7l-3.9 2021-07-13T02:53:00,917 creating build/temp.linux-armv7l-3.9/genomelake 2021-07-13T02:53:00,918 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c genomelake/util.c -o build/temp.linux-armv7l-3.9/genomelake/util.o 2021-07-13T02:53:01,317 genomelake/util.c: In function ‘__pyx_pf_10genomelake_4util_2one_hot_encode_sequence’: 2021-07-13T02:53:01,319 genomelake/util.c:221:53: warning: left-hand operand of comma expression has no effect [-Wunused-value] 2021-07-13T02:53:01,319 221 | #define __Pyx_void_to_None(void_result) (void_result, Py_INCREF(Py_None), Py_None) 2021-07-13T02:53:01,319 | ^ 2021-07-13T02:53:01,319 genomelake/util.c:2180:15: note: in expansion of macro ‘__Pyx_void_to_None’ 2021-07-13T02:53:01,319 2180 | __pyx_t_1 = __Pyx_void_to_None(NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-13T02:53:01,319 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,492 genomelake/util.c: In function ‘PyInit_util’: 2021-07-13T02:53:01,499 genomelake/util.c:14114:25: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T02:53:01,499 14114 | __pyx_type___pyx_array.tp_print = 0; 2021-07-13T02:53:01,500 | ^ 2021-07-13T02:53:01,507 genomelake/util.c:14117:31: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T02:53:01,507 14117 | __pyx_type___pyx_MemviewEnum.tp_print = 0; 2021-07-13T02:53:01,507 | ^ 2021-07-13T02:53:01,514 genomelake/util.c:14128:30: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T02:53:01,514 14128 | __pyx_type___pyx_memoryview.tp_print = 0; 2021-07-13T02:53:01,514 | ^ 2021-07-13T02:53:01,521 genomelake/util.c:14137:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T02:53:01,521 14137 | __pyx_type___pyx_memoryviewslice.tp_print = 0; 2021-07-13T02:53:01,522 | ^ 2021-07-13T02:53:01,531 genomelake/util.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T02:53:01,538 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,539 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,539 | ^ 2021-07-13T02:53:01,539 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,539 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,540 from genomelake/util.c:24: 2021-07-13T02:53:01,540 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,540 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,540 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,548 genomelake/util.c:14420:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,548 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,548 | ^ 2021-07-13T02:53:01,548 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,549 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,549 from genomelake/util.c:24: 2021-07-13T02:53:01,549 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T02:53:01,549 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T02:53:01,549 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,556 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,557 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,557 | ^ 2021-07-13T02:53:01,557 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,557 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,557 from genomelake/util.c:24: 2021-07-13T02:53:01,557 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,558 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,558 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,565 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,565 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,565 | ^ 2021-07-13T02:53:01,565 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,566 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,566 from genomelake/util.c:24: 2021-07-13T02:53:01,566 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,566 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,566 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,573 genomelake/util.c:14420:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,574 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,574 | ^ 2021-07-13T02:53:01,574 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,574 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,574 from genomelake/util.c:24: 2021-07-13T02:53:01,574 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T02:53:01,575 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T02:53:01,575 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,582 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,582 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,583 | ^ 2021-07-13T02:53:01,583 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,583 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,583 from genomelake/util.c:24: 2021-07-13T02:53:01,583 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,583 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,583 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,593 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,593 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,593 | ^ 2021-07-13T02:53:01,594 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,594 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,594 from genomelake/util.c:24: 2021-07-13T02:53:01,594 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,594 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,594 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,602 genomelake/util.c:14436:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,602 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,602 | ^ 2021-07-13T02:53:01,603 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,603 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,603 from genomelake/util.c:24: 2021-07-13T02:53:01,603 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T02:53:01,603 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T02:53:01,603 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,611 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,611 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,611 | ^ 2021-07-13T02:53:01,611 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,612 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,612 from genomelake/util.c:24: 2021-07-13T02:53:01,612 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,612 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,612 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,619 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,619 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,620 | ^ 2021-07-13T02:53:01,620 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,620 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,620 from genomelake/util.c:24: 2021-07-13T02:53:01,620 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,620 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,621 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,628 genomelake/util.c:14436:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,628 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,628 | ^ 2021-07-13T02:53:01,628 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,629 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,629 from genomelake/util.c:24: 2021-07-13T02:53:01,629 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T02:53:01,629 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T02:53:01,629 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,637 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:01,637 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T02:53:01,637 | ^ 2021-07-13T02:53:01,637 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:01,638 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:01,638 from genomelake/util.c:24: 2021-07-13T02:53:01,638 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T02:53:01,638 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T02:53:01,638 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:01,653 genomelake/util.c: In function ‘__Pyx_ExceptionSave’: 2021-07-13T02:53:01,666 genomelake/util.c:14537:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:01,666 14537 | *type = tstate->exc_type; 2021-07-13T02:53:01,666 | ^~~~~~~~ 2021-07-13T02:53:01,666 | curexc_type 2021-07-13T02:53:01,678 genomelake/util.c:14538:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:01,679 14538 | *value = tstate->exc_value; 2021-07-13T02:53:01,679 | ^~~~~~~~~ 2021-07-13T02:53:01,679 | curexc_value 2021-07-13T02:53:01,691 genomelake/util.c:14539:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:01,692 14539 | *tb = tstate->exc_traceback; 2021-07-13T02:53:01,692 | ^~~~~~~~~~~~~ 2021-07-13T02:53:01,692 | curexc_traceback 2021-07-13T02:53:01,692 genomelake/util.c: In function ‘__Pyx_ExceptionReset’: 2021-07-13T02:53:01,704 genomelake/util.c:14551:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:01,704 14551 | tmp_type = tstate->exc_type; 2021-07-13T02:53:01,705 | ^~~~~~~~ 2021-07-13T02:53:01,705 | curexc_type 2021-07-13T02:53:01,717 genomelake/util.c:14552:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:01,717 14552 | tmp_value = tstate->exc_value; 2021-07-13T02:53:01,717 | ^~~~~~~~~ 2021-07-13T02:53:01,717 | curexc_value 2021-07-13T02:53:01,729 genomelake/util.c:14553:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:01,729 14553 | tmp_tb = tstate->exc_traceback; 2021-07-13T02:53:01,729 | ^~~~~~~~~~~~~ 2021-07-13T02:53:01,730 | curexc_traceback 2021-07-13T02:53:01,744 genomelake/util.c:14554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:01,745 14554 | tstate->exc_type = type; 2021-07-13T02:53:01,745 | ^~~~~~~~ 2021-07-13T02:53:01,745 | curexc_type 2021-07-13T02:53:01,757 genomelake/util.c:14555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:01,757 14555 | tstate->exc_value = value; 2021-07-13T02:53:01,757 | ^~~~~~~~~ 2021-07-13T02:53:01,758 | curexc_value 2021-07-13T02:53:01,770 genomelake/util.c:14556:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:01,770 14556 | tstate->exc_traceback = tb; 2021-07-13T02:53:01,770 | ^~~~~~~~~~~~~ 2021-07-13T02:53:01,770 | curexc_traceback 2021-07-13T02:53:01,773 genomelake/util.c: In function ‘__Pyx_GetException’: 2021-07-13T02:53:01,786 genomelake/util.c:14599:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:01,786 14599 | tmp_type = tstate->exc_type; 2021-07-13T02:53:01,786 | ^~~~~~~~ 2021-07-13T02:53:01,786 | curexc_type 2021-07-13T02:53:01,799 genomelake/util.c:14600:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:01,799 14600 | tmp_value = tstate->exc_value; 2021-07-13T02:53:01,799 | ^~~~~~~~~ 2021-07-13T02:53:01,799 | curexc_value 2021-07-13T02:53:01,811 genomelake/util.c:14601:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:01,812 14601 | tmp_tb = tstate->exc_traceback; 2021-07-13T02:53:01,812 | ^~~~~~~~~~~~~ 2021-07-13T02:53:01,812 | curexc_traceback 2021-07-13T02:53:01,824 genomelake/util.c:14602:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:01,824 14602 | tstate->exc_type = local_type; 2021-07-13T02:53:01,824 | ^~~~~~~~ 2021-07-13T02:53:01,825 | curexc_type 2021-07-13T02:53:01,837 genomelake/util.c:14603:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:01,837 14603 | tstate->exc_value = local_value; 2021-07-13T02:53:01,837 | ^~~~~~~~~ 2021-07-13T02:53:01,837 | curexc_value 2021-07-13T02:53:01,850 genomelake/util.c:14604:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:01,850 14604 | tstate->exc_traceback = local_tb; 2021-07-13T02:53:01,850 | ^~~~~~~~~~~~~ 2021-07-13T02:53:01,850 | curexc_traceback 2021-07-13T02:53:02,003 genomelake/util.c: In function ‘__Pyx_decode_c_string’: 2021-07-13T02:53:02,011 genomelake/util.c:15737:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T02:53:02,011 15737 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-13T02:53:02,011 | ^~~~~~ 2021-07-13T02:53:02,011 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T02:53:02,011 from /usr/include/python3.9/Python.h:97, 2021-07-13T02:53:02,011 from genomelake/util.c:24: 2021-07-13T02:53:02,012 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-13T02:53:02,012 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-13T02:53:02,012 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T02:53:02,018 genomelake/util.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-13T02:53:02,031 genomelake/util.c:15777:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:02,032 15777 | tmp_type = tstate->exc_type; 2021-07-13T02:53:02,032 | ^~~~~~~~ 2021-07-13T02:53:02,032 | curexc_type 2021-07-13T02:53:02,045 genomelake/util.c:15778:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:02,045 15778 | tmp_value = tstate->exc_value; 2021-07-13T02:53:02,045 | ^~~~~~~~~ 2021-07-13T02:53:02,045 | curexc_value 2021-07-13T02:53:02,059 genomelake/util.c:15779:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:02,059 15779 | tmp_tb = tstate->exc_traceback; 2021-07-13T02:53:02,059 | ^~~~~~~~~~~~~ 2021-07-13T02:53:02,059 | curexc_traceback 2021-07-13T02:53:02,072 genomelake/util.c:15780:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T02:53:02,072 15780 | tstate->exc_type = *type; 2021-07-13T02:53:02,072 | ^~~~~~~~ 2021-07-13T02:53:02,073 | curexc_type 2021-07-13T02:53:02,086 genomelake/util.c:15781:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T02:53:02,086 15781 | tstate->exc_value = *value; 2021-07-13T02:53:02,086 | ^~~~~~~~~ 2021-07-13T02:53:02,086 | curexc_value 2021-07-13T02:53:02,099 genomelake/util.c:15782:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T02:53:02,099 15782 | tstate->exc_traceback = *tb; 2021-07-13T02:53:02,100 | ^~~~~~~~~~~~~ 2021-07-13T02:53:02,100 | curexc_traceback 2021-07-13T02:53:02,349 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T02:53:02,430 Building wheel for genomelake (setup.py): finished with status 'error' 2021-07-13T02:53:02,431 ERROR: Failed building wheel for genomelake 2021-07-13T02:53:02,432 Running setup.py clean for genomelake 2021-07-13T02:53:02,432 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-eq13biim/genomelake_e9801479c88d4ce2adc5bb5002698048/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-eq13biim/genomelake_e9801479c88d4ce2adc5bb5002698048/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T02:53:03,370 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T02:53:03,371 warnings.warn( 2021-07-13T02:53:03,483 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T02:53:03,484 warnings.warn( 2021-07-13T02:53:03,495 running clean 2021-07-13T02:53:03,497 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T02:53:03,499 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T02:53:03,502 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T02:53:03,502 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T02:53:03,503 removing 'build' 2021-07-13T02:53:03,558 Failed to build genomelake 2021-07-13T02:53:03,559 ERROR: Failed to build one or more wheels 2021-07-13T02:53:03,560 Exception information: 2021-07-13T02:53:03,560 Traceback (most recent call last): 2021-07-13T02:53:03,560 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T02:53:03,560 status = self.run(options, args) 2021-07-13T02:53:03,560 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T02:53:03,560 return func(self, options, args) 2021-07-13T02:53:03,560 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T02:53:03,560 raise CommandError( 2021-07-13T02:53:03,560 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T02:53:03,562 Removed build tracker: '/tmp/pip-req-tracker-9lvbwark'