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https://files.pythonhosted.org/packages/31/b4/f7d533c9099a7be91b964685e2d86f1986e25c45c6ec7174528f95d4c732/jcvi-1.1.6.tar.gz#sha256=c3a54f22140e4e3962f3cb05a5d9c47952d48b67d0459bf499193828018255a3 (from https://pypi.org/simple/jcvi/), version: 1.1.6 2021-07-13T05:20:18,201 Found link https://files.pythonhosted.org/packages/01/be/3ae008ee2b3a53b46f8953bbaf1c5372b5faaf790ee7c5813201d50fbdaf/jcvi-1.1.7.tar.gz#sha256=2709f0e2420da0f9d5a5da581f8f19bd54d7bb9a9720f0d0e9141f30e84b5ab2 (from https://pypi.org/simple/jcvi/), version: 1.1.7 2021-07-13T05:20:18,202 Found link https://files.pythonhosted.org/packages/01/54/44acf2550250a12ea505f2b4be565357d06bdc87d7ea575f955ae98e9700/jcvi-1.1.8.tar.gz#sha256=8d4ce6586068e6a2fa6e39303f5dab1b6f068a1335be09e2488c5f9387685228 (from https://pypi.org/simple/jcvi/), version: 1.1.8 2021-07-13T05:20:18,202 Found link https://files.pythonhosted.org/packages/f8/da/21a544f6e7177504462669d1d882703c9d189aa18acfe4fb7ae28f541b12/jcvi-1.1.9.tar.gz#sha256=9711e6c5dec2436a4f712385ee165051e6c60c07f2ab0e2984e1139874879c77 (from https://pypi.org/simple/jcvi/), version: 1.1.9 2021-07-13T05:20:18,202 Found link https://files.pythonhosted.org/packages/46/fb/a76158690f188e05a01327bd64d100c8604b752811942f7d387ae6ed52eb/jcvi-1.1.10.tar.gz#sha256=02340bff4e25d38e975e64add2cecfbedc262855567e2a571d0519b13f884e9a (from https://pypi.org/simple/jcvi/), version: 1.1.10 2021-07-13T05:20:18,203 Found link https://files.pythonhosted.org/packages/5b/36/1ed66483a5d733d87bd77466e425ef557fa4e1aa8c779b0acf02a810f822/jcvi-1.1.11.tar.gz#sha256=871ea81abb709470fc2f86038372915211dfb211901a9faed0b84714783780e7 (from https://pypi.org/simple/jcvi/), version: 1.1.11 2021-07-13T05:20:18,203 Found link https://files.pythonhosted.org/packages/7e/5c/76e236becc18806e305a68068ab84eab0eeeb862fbcea38674a7775c72c5/jcvi-1.1.12.tar.gz#sha256=9c688816d2770300a137fe0cdb7c4cdbc0f94e9f96d849cf0c1465af4464f8fe (from https://pypi.org/simple/jcvi/), version: 1.1.12 2021-07-13T05:20:18,203 Found link https://files.pythonhosted.org/packages/77/7a/18a4f1d012563ddb46a28b27884d6de78aab0f2da365961aaa138ee44420/jcvi-1.1.13.tar.gz#sha256=365ccd2b6e876a699e9ef7d6573da2c9f96f48221d8b551d21595c070b5a039d (from https://pypi.org/simple/jcvi/), version: 1.1.13 2021-07-13T05:20:18,204 Found link https://files.pythonhosted.org/packages/b5/bd/37396ec8e4339c5a70aa6a146343446361b0d604e544eeb1850307b167b3/jcvi-1.1.14.tar.gz#sha256=8fc9dec5182ee1e4316e2b08dddfec162c3a0e3700f5890ee913829212263fd0 (from https://pypi.org/simple/jcvi/), version: 1.1.14 2021-07-13T05:20:18,204 Found link https://files.pythonhosted.org/packages/89/97/1497942bf5ec52ada7cee1ad1961eecbe87361494812c57c9fb7cf659834/jcvi-1.1.15.tar.gz#sha256=d22c72cd566f41ca8e9e47e30ca430ec03fe06cc62dd22a652e8e0257c3a3e90 (from https://pypi.org/simple/jcvi/), version: 1.1.15 2021-07-13T05:20:18,204 Found link https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 (from https://pypi.org/simple/jcvi/), version: 1.1.16 2021-07-13T05:20:18,205 Skipping link: not a file: https://pypi.org/simple/jcvi/ 2021-07-13T05:20:18,226 Given no hashes to check 1 links for project 'jcvi': discarding no candidates 2021-07-13T05:20:18,241 Collecting jcvi==1.1.16 2021-07-13T05:20:18,243 Created temporary directory: /tmp/pip-unpack-v9msq_nt 2021-07-13T05:20:18,286 Downloading jcvi-1.1.16.tar.gz (795 kB) 2021-07-13T05:20:19,110 Added jcvi==1.1.16 from https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 to build tracker '/tmp/pip-req-tracker-gcgpkvko' 2021-07-13T05:20:19,112 Running setup.py (path:/tmp/pip-wheel-8h8u41eb/jcvi_927855ec19694db9b3b4ebe6b646d38c/setup.py) egg_info for package jcvi 2021-07-13T05:20:19,112 Created temporary directory: /tmp/pip-pip-egg-info-vl_tayxa 2021-07-13T05:20:19,113 Running command python setup.py egg_info 2021-07-13T05:20:20,942 running egg_info 2021-07-13T05:20:20,944 creating /tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info 2021-07-13T05:20:20,945 writing /tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/PKG-INFO 2021-07-13T05:20:20,949 writing dependency_links to /tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/dependency_links.txt 2021-07-13T05:20:20,951 writing requirements to /tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/requires.txt 2021-07-13T05:20:20,952 writing top-level names to /tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/top_level.txt 2021-07-13T05:20:20,954 writing manifest file '/tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/SOURCES.txt' 2021-07-13T05:20:20,981 reading manifest file '/tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/SOURCES.txt' 2021-07-13T05:20:20,983 reading manifest template 'MANIFEST.in' 2021-07-13T05:20:20,987 adding license file 'LICENSE' 2021-07-13T05:20:20,996 writing manifest file '/tmp/pip-pip-egg-info-vl_tayxa/jcvi.egg-info/SOURCES.txt' 2021-07-13T05:20:20,998 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.16' to '1.1.16' 2021-07-13T05:20:20,998 warnings.warn(tmpl.format(**locals())) 2021-07-13T05:20:21,093 Source in /tmp/pip-wheel-8h8u41eb/jcvi_927855ec19694db9b3b4ebe6b646d38c has version 1.1.16, which satisfies requirement jcvi==1.1.16 from https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 2021-07-13T05:20:21,094 Removed jcvi==1.1.16 from https://files.pythonhosted.org/packages/c6/49/63254eb560d3df5dece01e116fa6533f04b18dd76f0b51d8b778c7143864/jcvi-1.1.16.tar.gz#sha256=3e05eccc3d98c496adecb53eae0bdef7da82c1f733b2b0b859123e99e5778170 from build tracker '/tmp/pip-req-tracker-gcgpkvko' 2021-07-13T05:20:21,099 Created temporary directory: /tmp/pip-unpack-znkji43v 2021-07-13T05:20:21,100 Building wheels for collected packages: jcvi 2021-07-13T05:20:21,105 Created temporary directory: /tmp/pip-wheel-l5rmxwds 2021-07-13T05:20:21,106 Building wheel for jcvi (setup.py): started 2021-07-13T05:20:21,106 Destination directory: /tmp/pip-wheel-l5rmxwds 2021-07-13T05:20:21,107 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8h8u41eb/jcvi_927855ec19694db9b3b4ebe6b646d38c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8h8u41eb/jcvi_927855ec19694db9b3b4ebe6b646d38c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-l5rmxwds 2021-07-13T05:20:22,655 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.1.16' to '1.1.16' 2021-07-13T05:20:22,656 warnings.warn(tmpl.format(**locals())) 2021-07-13T05:20:22,745 running bdist_wheel 2021-07-13T05:20:22,751 running build 2021-07-13T05:20:22,751 running build_py 2021-07-13T05:20:22,757 creating build 2021-07-13T05:20:22,758 creating build/lib.linux-armv7l-3.7 2021-07-13T05:20:22,759 creating build/lib.linux-armv7l-3.7/jcvi 2021-07-13T05:20:22,760 copying jcvi/_version.py -> build/lib.linux-armv7l-3.7/jcvi 2021-07-13T05:20:22,763 copying jcvi/__init__.py -> build/lib.linux-armv7l-3.7/jcvi 2021-07-13T05:20:22,765 creating build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,766 copying jcvi/annotation/ahrd.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,770 copying jcvi/annotation/qc.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,772 copying jcvi/annotation/evm.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,775 copying jcvi/annotation/reformat.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,779 copying jcvi/annotation/train.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,781 copying jcvi/annotation/pasa.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,784 copying jcvi/annotation/depth.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,787 copying jcvi/annotation/stats.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,790 copying jcvi/annotation/maker.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,793 copying jcvi/annotation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,795 copying jcvi/annotation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,798 copying jcvi/annotation/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/annotation 2021-07-13T05:20:22,802 creating build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,803 copying jcvi/compara/phylogeny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,806 copying jcvi/compara/fractionation.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,809 copying jcvi/compara/quota.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,813 copying jcvi/compara/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,817 copying jcvi/compara/blastfilter.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,821 copying jcvi/compara/reconstruct.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,824 copying jcvi/compara/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,827 copying jcvi/compara/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,829 copying jcvi/compara/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,831 copying jcvi/compara/catalog.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,835 copying jcvi/compara/pad.py -> build/lib.linux-armv7l-3.7/jcvi/compara 2021-07-13T05:20:22,841 creating build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,842 copying jcvi/graphics/histogram.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,847 copying jcvi/graphics/chromosome.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,850 copying jcvi/graphics/wheel.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,853 copying jcvi/graphics/blastplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,855 copying jcvi/graphics/align.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,858 copying jcvi/graphics/heatmap.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,861 copying jcvi/graphics/base.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,864 copying jcvi/graphics/glyph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,867 copying jcvi/graphics/table.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,870 copying jcvi/graphics/mummerplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,872 copying jcvi/graphics/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,875 copying jcvi/graphics/tree.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,879 copying jcvi/graphics/synteny.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,882 copying jcvi/graphics/graph.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,884 copying jcvi/graphics/assembly.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,888 copying jcvi/graphics/logo.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,890 copying jcvi/graphics/landscape.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,893 copying jcvi/graphics/grabseeds.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,897 copying jcvi/graphics/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,899 copying jcvi/graphics/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,901 copying jcvi/graphics/dotplot.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,904 copying jcvi/graphics/whisker.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,907 copying jcvi/graphics/karyotype.py -> build/lib.linux-armv7l-3.7/jcvi/graphics 2021-07-13T05:20:22,912 creating build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,913 copying jcvi/projects/bites.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,916 copying jcvi/projects/str.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,921 copying jcvi/projects/vanilla.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,924 copying jcvi/projects/tgbs.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,927 copying jcvi/projects/ies.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,930 copying jcvi/projects/alfalfa.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,933 copying jcvi/projects/age.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,936 copying jcvi/projects/sugarcane.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,940 copying jcvi/projects/napus.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,944 copying jcvi/projects/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,947 copying jcvi/projects/pineapple.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,951 copying jcvi/projects/heterosis.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,953 copying jcvi/projects/synfind.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,957 copying jcvi/projects/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,959 copying jcvi/projects/misc.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,963 copying jcvi/projects/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,965 copying jcvi/projects/pistachio.py -> build/lib.linux-armv7l-3.7/jcvi/projects 2021-07-13T05:20:22,970 creating build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,970 copying jcvi/apps/blastplus.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,973 copying jcvi/apps/r.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,976 copying jcvi/apps/restriction.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,978 copying jcvi/apps/align.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,982 copying jcvi/apps/emboss.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,984 copying jcvi/apps/base.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,989 copying jcvi/apps/uclust.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,994 copying jcvi/apps/bwa.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:22,997 copying jcvi/apps/grid.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,000 copying jcvi/apps/gmap.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,003 copying jcvi/apps/bowtie.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,006 copying jcvi/apps/biomart.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,009 copying jcvi/apps/script.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,011 copying jcvi/apps/lastz.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,014 copying jcvi/apps/phylo.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,018 copying jcvi/apps/vecscreen.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,020 copying jcvi/apps/cdhit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,024 copying jcvi/apps/ks.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,027 copying jcvi/apps/mask.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,030 copying jcvi/apps/gbsubmit.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,033 copying jcvi/apps/uniprot.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,035 copying jcvi/apps/softlink.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,037 copying jcvi/apps/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,039 copying jcvi/apps/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,042 copying jcvi/apps/fetch.py -> build/lib.linux-armv7l-3.7/jcvi/apps 2021-07-13T05:20:23,047 creating build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,048 copying jcvi/utils/cbook.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,051 copying jcvi/utils/taxonomy.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,054 copying jcvi/utils/webcolors.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,056 copying jcvi/utils/validator.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,058 copying jcvi/utils/console.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,060 copying jcvi/utils/aws.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,063 copying jcvi/utils/table.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,066 copying jcvi/utils/ez_setup.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,068 copying jcvi/utils/range.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,071 copying jcvi/utils/db.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,075 copying jcvi/utils/grouper.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,077 copying jcvi/utils/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,079 copying jcvi/utils/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,081 copying jcvi/utils/orderedcollections.py -> build/lib.linux-armv7l-3.7/jcvi/utils 2021-07-13T05:20:23,086 creating build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,088 copying jcvi/assembly/postprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,091 copying jcvi/assembly/syntenypath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,094 copying jcvi/assembly/hic.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,099 copying jcvi/assembly/base.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,101 copying jcvi/assembly/coverage.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,104 copying jcvi/assembly/soap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,107 copying jcvi/assembly/geneticmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,110 copying jcvi/assembly/allpaths.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,113 copying jcvi/assembly/gaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,116 copying jcvi/assembly/sim.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,119 copying jcvi/assembly/allmaps.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,124 copying jcvi/assembly/patch.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,128 copying jcvi/assembly/opticalmap.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,132 copying jcvi/assembly/trinity.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,134 copying jcvi/assembly/preprocess.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,139 copying jcvi/assembly/goldenpath.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,143 copying jcvi/assembly/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,145 copying jcvi/assembly/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,147 copying jcvi/assembly/ca.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,151 copying jcvi/assembly/automaton.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,154 copying jcvi/assembly/kmer.py -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,160 creating build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,161 copying jcvi/formats/maf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,164 copying jcvi/formats/bed.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,169 copying jcvi/formats/blast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,173 copying jcvi/formats/psl.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,176 copying jcvi/formats/chain.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,179 copying jcvi/formats/pdf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,182 copying jcvi/formats/base.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,185 copying jcvi/formats/gff.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,191 copying jcvi/formats/obo.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,194 copying jcvi/formats/genbank.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,197 copying jcvi/formats/agp.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,202 copying jcvi/formats/paf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,205 copying jcvi/formats/fastq.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,209 copying jcvi/formats/contig.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,212 copying jcvi/formats/coords.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,215 copying jcvi/formats/excel.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,218 copying jcvi/formats/html.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,221 copying jcvi/formats/vcf.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,224 copying jcvi/formats/sizes.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,227 copying jcvi/formats/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,229 copying jcvi/formats/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,232 copying jcvi/formats/sam.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,235 copying jcvi/formats/cdt.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,238 copying jcvi/formats/pyblast.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,241 copying jcvi/formats/fasta.py -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,247 creating build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,248 copying jcvi/algorithms/supermap.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,251 copying jcvi/algorithms/ec.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,254 copying jcvi/algorithms/formula.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,257 copying jcvi/algorithms/tsp.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,260 copying jcvi/algorithms/lis.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,264 copying jcvi/algorithms/lpsolve.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,267 copying jcvi/algorithms/graph.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,271 copying jcvi/algorithms/maxsum.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,273 copying jcvi/algorithms/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,275 copying jcvi/algorithms/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,278 copying jcvi/algorithms/ml.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,280 copying jcvi/algorithms/matrix.py -> build/lib.linux-armv7l-3.7/jcvi/algorithms 2021-07-13T05:20:23,285 creating build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,286 copying jcvi/variation/tassel.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,288 copying jcvi/variation/str.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,293 copying jcvi/variation/delly.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,296 copying jcvi/variation/cnv.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,300 copying jcvi/variation/deconvolute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,303 copying jcvi/variation/phase.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,305 copying jcvi/variation/snp.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,308 copying jcvi/variation/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,310 copying jcvi/variation/__main__.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,312 copying jcvi/variation/impute.py -> build/lib.linux-armv7l-3.7/jcvi/variation 2021-07-13T05:20:23,315 creating build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,316 copying jcvi/utils/data/__init__.py -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,318 running egg_info 2021-07-13T05:20:23,327 writing jcvi.egg-info/PKG-INFO 2021-07-13T05:20:23,330 writing dependency_links to jcvi.egg-info/dependency_links.txt 2021-07-13T05:20:23,332 writing requirements to jcvi.egg-info/requires.txt 2021-07-13T05:20:23,334 writing top-level names to jcvi.egg-info/top_level.txt 2021-07-13T05:20:23,353 reading manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-13T05:20:23,360 reading manifest template 'MANIFEST.in' 2021-07-13T05:20:23,363 adding license file 'LICENSE' 2021-07-13T05:20:23,376 writing manifest file 'jcvi.egg-info/SOURCES.txt' 2021-07-13T05:20:23,382 copying jcvi/assembly/chic.pyx -> build/lib.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:23,384 copying jcvi/formats/cblast.pyx -> build/lib.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:23,387 copying jcvi/utils/data/Airswing.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,391 copying jcvi/utils/data/Collegia.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,396 copying jcvi/utils/data/HookedUp.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,400 copying jcvi/utils/data/Humor-Sans.ttf -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,403 copying jcvi/utils/data/TREDs.meta.csv -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,408 copying jcvi/utils/data/adapters.fasta -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,410 copying jcvi/utils/data/blosum80.mat -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,413 copying jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,417 copying jcvi/utils/data/colorchecker.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,420 copying jcvi/utils/data/hg38.band.txt -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,427 copying jcvi/utils/data/hg38.chrom.sizes -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,430 copying jcvi/utils/data/instance.json -> build/lib.linux-armv7l-3.7/jcvi/utils/data 2021-07-13T05:20:23,452 UPDATING build/lib.linux-armv7l-3.7/jcvi/_version.py 2021-07-13T05:20:23,454 set build/lib.linux-armv7l-3.7/jcvi/_version.py to 'v1.1.16' 2021-07-13T05:20:23,454 running build_ext 2021-07-13T05:20:23,528 cythoning jcvi/assembly/chic.pyx to jcvi/assembly/chic.c 2021-07-13T05:20:24,134 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8h8u41eb/jcvi_927855ec19694db9b3b4ebe6b646d38c/jcvi/assembly/chic.pyx 2021-07-13T05:20:24,135 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T05:20:25,638 cythoning jcvi/formats/cblast.pyx to jcvi/formats/cblast.c 2021-07-13T05:20:25,646 /usr/local/lib/python3.7/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8h8u41eb/jcvi_927855ec19694db9b3b4ebe6b646d38c/jcvi/formats/cblast.pyx 2021-07-13T05:20:25,646 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T05:20:26,241 building 'jcvi.assembly.chic' extension 2021-07-13T05:20:26,242 creating build/temp.linux-armv7l-3.7 2021-07-13T05:20:26,242 creating build/temp.linux-armv7l-3.7/jcvi 2021-07-13T05:20:26,243 creating build/temp.linux-armv7l-3.7/jcvi/assembly 2021-07-13T05:20:26,248 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c jcvi/assembly/chic.c -o build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -O3 2021-07-13T05:20:27,199 In file included from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T05:20:27,200 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T05:20:27,200 from /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T05:20:27,200 from jcvi/assembly/chic.c:612: 2021-07-13T05:20:27,200 /usr/local/lib/python3.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T05:20:27,200 #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T05:20:27,201 ^~~~~~~ 2021-07-13T05:20:30,810 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/assembly/chic.o -o build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so 2021-07-13T05:20:31,176 building 'jcvi.formats.cblast' extension 2021-07-13T05:20:31,177 creating build/temp.linux-armv7l-3.7/jcvi/formats 2021-07-13T05:20:31,178 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c jcvi/formats/cblast.c -o build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -O3 2021-07-13T05:20:38,372 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.7/jcvi/formats/cblast.o -o build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so 2021-07-13T05:20:38,544 installing to build/bdist.linux-armv7l/wheel 2021-07-13T05:20:38,544 running install 2021-07-13T05:20:38,546 running install_lib 2021-07-13T05:20:38,553 creating build/bdist.linux-armv7l 2021-07-13T05:20:38,554 creating build/bdist.linux-armv7l/wheel 2021-07-13T05:20:38,556 creating build/bdist.linux-armv7l/wheel/jcvi 2021-07-13T05:20:38,558 creating build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,560 copying build/lib.linux-armv7l-3.7/jcvi/annotation/ahrd.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,564 copying build/lib.linux-armv7l-3.7/jcvi/annotation/qc.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,568 copying build/lib.linux-armv7l-3.7/jcvi/annotation/evm.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,571 copying build/lib.linux-armv7l-3.7/jcvi/annotation/reformat.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,576 copying build/lib.linux-armv7l-3.7/jcvi/annotation/train.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,580 copying build/lib.linux-armv7l-3.7/jcvi/annotation/pasa.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,582 copying build/lib.linux-armv7l-3.7/jcvi/annotation/depth.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,585 copying build/lib.linux-armv7l-3.7/jcvi/annotation/stats.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,588 copying build/lib.linux-armv7l-3.7/jcvi/annotation/maker.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,591 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,593 copying build/lib.linux-armv7l-3.7/jcvi/annotation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,596 copying build/lib.linux-armv7l-3.7/jcvi/annotation/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/annotation 2021-07-13T05:20:38,601 creating build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,602 copying build/lib.linux-armv7l-3.7/jcvi/compara/phylogeny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,605 copying build/lib.linux-armv7l-3.7/jcvi/compara/fractionation.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,609 copying build/lib.linux-armv7l-3.7/jcvi/compara/quota.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,612 copying build/lib.linux-armv7l-3.7/jcvi/compara/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,617 copying build/lib.linux-armv7l-3.7/jcvi/compara/blastfilter.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,620 copying build/lib.linux-armv7l-3.7/jcvi/compara/reconstruct.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,623 copying build/lib.linux-armv7l-3.7/jcvi/compara/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,626 copying build/lib.linux-armv7l-3.7/jcvi/compara/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,629 copying build/lib.linux-armv7l-3.7/jcvi/compara/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,631 copying build/lib.linux-armv7l-3.7/jcvi/compara/catalog.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,635 copying build/lib.linux-armv7l-3.7/jcvi/compara/pad.py -> build/bdist.linux-armv7l/wheel/jcvi/compara 2021-07-13T05:20:38,639 creating build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,640 copying build/lib.linux-armv7l-3.7/jcvi/graphics/histogram.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,643 copying build/lib.linux-armv7l-3.7/jcvi/graphics/chromosome.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,647 copying build/lib.linux-armv7l-3.7/jcvi/graphics/wheel.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,649 copying build/lib.linux-armv7l-3.7/jcvi/graphics/blastplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,652 copying build/lib.linux-armv7l-3.7/jcvi/graphics/align.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,655 copying build/lib.linux-armv7l-3.7/jcvi/graphics/heatmap.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,657 copying build/lib.linux-armv7l-3.7/jcvi/graphics/base.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,660 copying build/lib.linux-armv7l-3.7/jcvi/graphics/glyph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,664 copying build/lib.linux-armv7l-3.7/jcvi/graphics/table.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,666 copying build/lib.linux-armv7l-3.7/jcvi/graphics/mummerplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,669 copying build/lib.linux-armv7l-3.7/jcvi/graphics/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,671 copying build/lib.linux-armv7l-3.7/jcvi/graphics/tree.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,675 copying build/lib.linux-armv7l-3.7/jcvi/graphics/synteny.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,680 copying build/lib.linux-armv7l-3.7/jcvi/graphics/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,682 copying build/lib.linux-armv7l-3.7/jcvi/graphics/assembly.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,687 copying build/lib.linux-armv7l-3.7/jcvi/graphics/logo.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,690 copying build/lib.linux-armv7l-3.7/jcvi/graphics/landscape.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,694 copying build/lib.linux-armv7l-3.7/jcvi/graphics/grabseeds.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,698 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,700 copying build/lib.linux-armv7l-3.7/jcvi/graphics/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,702 copying build/lib.linux-armv7l-3.7/jcvi/graphics/dotplot.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,706 copying build/lib.linux-armv7l-3.7/jcvi/graphics/whisker.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,708 copying build/lib.linux-armv7l-3.7/jcvi/graphics/karyotype.py -> build/bdist.linux-armv7l/wheel/jcvi/graphics 2021-07-13T05:20:38,714 creating build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,715 copying build/lib.linux-armv7l-3.7/jcvi/projects/bites.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,719 copying build/lib.linux-armv7l-3.7/jcvi/projects/str.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,726 copying build/lib.linux-armv7l-3.7/jcvi/projects/vanilla.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,730 copying build/lib.linux-armv7l-3.7/jcvi/projects/tgbs.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,733 copying build/lib.linux-armv7l-3.7/jcvi/projects/ies.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,737 copying build/lib.linux-armv7l-3.7/jcvi/projects/alfalfa.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,740 copying build/lib.linux-armv7l-3.7/jcvi/projects/age.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,743 copying build/lib.linux-armv7l-3.7/jcvi/projects/sugarcane.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,747 copying build/lib.linux-armv7l-3.7/jcvi/projects/napus.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,751 copying build/lib.linux-armv7l-3.7/jcvi/projects/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,754 copying build/lib.linux-armv7l-3.7/jcvi/projects/pineapple.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,759 copying build/lib.linux-armv7l-3.7/jcvi/projects/heterosis.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,762 copying build/lib.linux-armv7l-3.7/jcvi/projects/synfind.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,766 copying build/lib.linux-armv7l-3.7/jcvi/projects/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,767 copying build/lib.linux-armv7l-3.7/jcvi/projects/misc.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,772 copying build/lib.linux-armv7l-3.7/jcvi/projects/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,775 copying build/lib.linux-armv7l-3.7/jcvi/projects/pistachio.py -> build/bdist.linux-armv7l/wheel/jcvi/projects 2021-07-13T05:20:38,779 creating build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,781 copying build/lib.linux-armv7l-3.7/jcvi/apps/blastplus.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,784 copying build/lib.linux-armv7l-3.7/jcvi/apps/r.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,786 copying build/lib.linux-armv7l-3.7/jcvi/apps/restriction.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,790 copying build/lib.linux-armv7l-3.7/jcvi/apps/align.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,794 copying build/lib.linux-armv7l-3.7/jcvi/apps/emboss.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,799 copying build/lib.linux-armv7l-3.7/jcvi/apps/base.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,809 copying build/lib.linux-armv7l-3.7/jcvi/apps/uclust.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,816 copying build/lib.linux-armv7l-3.7/jcvi/apps/bwa.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,819 copying build/lib.linux-armv7l-3.7/jcvi/apps/grid.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,823 copying build/lib.linux-armv7l-3.7/jcvi/apps/gmap.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,827 copying build/lib.linux-armv7l-3.7/jcvi/apps/bowtie.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,830 copying build/lib.linux-armv7l-3.7/jcvi/apps/biomart.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,834 copying build/lib.linux-armv7l-3.7/jcvi/apps/script.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,837 copying build/lib.linux-armv7l-3.7/jcvi/apps/lastz.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,840 copying build/lib.linux-armv7l-3.7/jcvi/apps/phylo.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,845 copying build/lib.linux-armv7l-3.7/jcvi/apps/vecscreen.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,847 copying build/lib.linux-armv7l-3.7/jcvi/apps/cdhit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,851 copying build/lib.linux-armv7l-3.7/jcvi/apps/ks.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,855 copying build/lib.linux-armv7l-3.7/jcvi/apps/mask.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,857 copying build/lib.linux-armv7l-3.7/jcvi/apps/gbsubmit.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,861 copying build/lib.linux-armv7l-3.7/jcvi/apps/uniprot.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,864 copying build/lib.linux-armv7l-3.7/jcvi/apps/softlink.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,866 copying build/lib.linux-armv7l-3.7/jcvi/apps/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,869 copying build/lib.linux-armv7l-3.7/jcvi/apps/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,871 copying build/lib.linux-armv7l-3.7/jcvi/apps/fetch.py -> build/bdist.linux-armv7l/wheel/jcvi/apps 2021-07-13T05:20:38,876 creating build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,878 copying build/lib.linux-armv7l-3.7/jcvi/utils/cbook.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,881 copying build/lib.linux-armv7l-3.7/jcvi/utils/taxonomy.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,886 creating build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,887 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/blosum80.mat -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,890 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.band.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,894 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/colorchecker.txt -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,897 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Humor-Sans.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,901 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/HookedUp.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,905 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/TREDs.meta.csv -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,909 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/chrY.hg38.unique_ccn.gc -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,912 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,917 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Airswing.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,920 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,922 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/Collegia.ttf -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,928 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/adapters.fasta -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,931 copying build/lib.linux-armv7l-3.7/jcvi/utils/data/instance.json -> build/bdist.linux-armv7l/wheel/jcvi/utils/data 2021-07-13T05:20:38,934 copying build/lib.linux-armv7l-3.7/jcvi/utils/webcolors.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,936 copying build/lib.linux-armv7l-3.7/jcvi/utils/validator.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,939 copying build/lib.linux-armv7l-3.7/jcvi/utils/console.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,942 copying build/lib.linux-armv7l-3.7/jcvi/utils/aws.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,945 copying build/lib.linux-armv7l-3.7/jcvi/utils/table.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,948 copying build/lib.linux-armv7l-3.7/jcvi/utils/ez_setup.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,951 copying build/lib.linux-armv7l-3.7/jcvi/utils/range.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,954 copying build/lib.linux-armv7l-3.7/jcvi/utils/db.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,958 copying build/lib.linux-armv7l-3.7/jcvi/utils/grouper.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,960 copying build/lib.linux-armv7l-3.7/jcvi/utils/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,962 copying build/lib.linux-armv7l-3.7/jcvi/utils/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,965 copying build/lib.linux-armv7l-3.7/jcvi/utils/orderedcollections.py -> build/bdist.linux-armv7l/wheel/jcvi/utils 2021-07-13T05:20:38,969 creating build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,970 copying build/lib.linux-armv7l-3.7/jcvi/assembly/postprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,974 copying build/lib.linux-armv7l-3.7/jcvi/assembly/syntenypath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,977 copying build/lib.linux-armv7l-3.7/jcvi/assembly/hic.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,981 copying build/lib.linux-armv7l-3.7/jcvi/assembly/base.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,985 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.pyx -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,987 copying build/lib.linux-armv7l-3.7/jcvi/assembly/coverage.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,990 copying build/lib.linux-armv7l-3.7/jcvi/assembly/soap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,993 copying build/lib.linux-armv7l-3.7/jcvi/assembly/geneticmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:38,997 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allpaths.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,000 copying build/lib.linux-armv7l-3.7/jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,010 copying build/lib.linux-armv7l-3.7/jcvi/assembly/gaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,013 copying build/lib.linux-armv7l-3.7/jcvi/assembly/sim.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,016 copying build/lib.linux-armv7l-3.7/jcvi/assembly/allmaps.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,022 copying build/lib.linux-armv7l-3.7/jcvi/assembly/patch.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,026 copying build/lib.linux-armv7l-3.7/jcvi/assembly/opticalmap.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,029 copying build/lib.linux-armv7l-3.7/jcvi/assembly/trinity.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,032 copying build/lib.linux-armv7l-3.7/jcvi/assembly/preprocess.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,036 copying build/lib.linux-armv7l-3.7/jcvi/assembly/goldenpath.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,040 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,042 copying build/lib.linux-armv7l-3.7/jcvi/assembly/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,045 copying build/lib.linux-armv7l-3.7/jcvi/assembly/ca.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,049 copying build/lib.linux-armv7l-3.7/jcvi/assembly/automaton.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,052 copying build/lib.linux-armv7l-3.7/jcvi/assembly/kmer.py -> build/bdist.linux-armv7l/wheel/jcvi/assembly 2021-07-13T05:20:39,059 creating build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,060 copying build/lib.linux-armv7l-3.7/jcvi/formats/maf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,064 copying build/lib.linux-armv7l-3.7/jcvi/formats/bed.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,070 copying build/lib.linux-armv7l-3.7/jcvi/formats/blast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,075 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,098 copying build/lib.linux-armv7l-3.7/jcvi/formats/psl.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,101 copying build/lib.linux-armv7l-3.7/jcvi/formats/chain.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,105 copying build/lib.linux-armv7l-3.7/jcvi/formats/pdf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,108 copying build/lib.linux-armv7l-3.7/jcvi/formats/base.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,113 copying build/lib.linux-armv7l-3.7/jcvi/formats/gff.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,123 copying build/lib.linux-armv7l-3.7/jcvi/formats/obo.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,126 copying build/lib.linux-armv7l-3.7/jcvi/formats/genbank.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,130 copying build/lib.linux-armv7l-3.7/jcvi/formats/agp.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,139 copying build/lib.linux-armv7l-3.7/jcvi/formats/paf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,147 copying build/lib.linux-armv7l-3.7/jcvi/formats/fastq.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,153 copying build/lib.linux-armv7l-3.7/jcvi/formats/contig.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,159 copying build/lib.linux-armv7l-3.7/jcvi/formats/coords.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,167 copying build/lib.linux-armv7l-3.7/jcvi/formats/excel.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,175 copying build/lib.linux-armv7l-3.7/jcvi/formats/html.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,178 copying build/lib.linux-armv7l-3.7/jcvi/formats/cblast.pyx -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,181 copying build/lib.linux-armv7l-3.7/jcvi/formats/vcf.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,185 copying build/lib.linux-armv7l-3.7/jcvi/formats/sizes.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,188 copying build/lib.linux-armv7l-3.7/jcvi/formats/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,191 copying build/lib.linux-armv7l-3.7/jcvi/formats/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,401 copying build/lib.linux-armv7l-3.7/jcvi/formats/sam.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,406 copying build/lib.linux-armv7l-3.7/jcvi/formats/cdt.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,618 copying build/lib.linux-armv7l-3.7/jcvi/formats/pyblast.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,623 copying build/lib.linux-armv7l-3.7/jcvi/formats/fasta.py -> build/bdist.linux-armv7l/wheel/jcvi/formats 2021-07-13T05:20:39,631 copying build/lib.linux-armv7l-3.7/jcvi/_version.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-13T05:20:39,638 creating build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,641 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/supermap.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,644 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ec.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,647 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/formula.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,858 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/tsp.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,862 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lis.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,866 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/lpsolve.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,870 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/graph.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,876 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/maxsum.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,880 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,883 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,885 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/ml.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,887 copying build/lib.linux-armv7l-3.7/jcvi/algorithms/matrix.py -> build/bdist.linux-armv7l/wheel/jcvi/algorithms 2021-07-13T05:20:39,890 copying build/lib.linux-armv7l-3.7/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi 2021-07-13T05:20:39,892 creating build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,893 copying build/lib.linux-armv7l-3.7/jcvi/variation/tassel.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,895 copying build/lib.linux-armv7l-3.7/jcvi/variation/str.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,899 copying build/lib.linux-armv7l-3.7/jcvi/variation/delly.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,902 copying build/lib.linux-armv7l-3.7/jcvi/variation/cnv.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,906 copying build/lib.linux-armv7l-3.7/jcvi/variation/deconvolute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,908 copying build/lib.linux-armv7l-3.7/jcvi/variation/phase.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,910 copying build/lib.linux-armv7l-3.7/jcvi/variation/snp.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,912 copying build/lib.linux-armv7l-3.7/jcvi/variation/__init__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,914 copying build/lib.linux-armv7l-3.7/jcvi/variation/__main__.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,916 copying build/lib.linux-armv7l-3.7/jcvi/variation/impute.py -> build/bdist.linux-armv7l/wheel/jcvi/variation 2021-07-13T05:20:39,918 running install_egg_info 2021-07-13T05:20:39,928 Copying jcvi.egg-info to build/bdist.linux-armv7l/wheel/jcvi-1.1.16-py3.7.egg-info 2021-07-13T05:20:39,944 running install_scripts 2021-07-13T05:20:40,017 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-13T05:20:40,022 creating build/bdist.linux-armv7l/wheel/jcvi-1.1.16.dist-info/WHEEL 2021-07-13T05:20:40,024 creating '/tmp/pip-wheel-l5rmxwds/jcvi-1.1.16-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T05:20:40,027 adding 'jcvi/__init__.py' 2021-07-13T05:20:40,028 adding 'jcvi/_version.py' 2021-07-13T05:20:40,030 adding 'jcvi/algorithms/__init__.py' 2021-07-13T05:20:40,031 adding 'jcvi/algorithms/__main__.py' 2021-07-13T05:20:40,032 adding 'jcvi/algorithms/ec.py' 2021-07-13T05:20:40,034 adding 'jcvi/algorithms/formula.py' 2021-07-13T05:20:40,037 adding 'jcvi/algorithms/graph.py' 2021-07-13T05:20:40,038 adding 'jcvi/algorithms/lis.py' 2021-07-13T05:20:40,042 adding 'jcvi/algorithms/lpsolve.py' 2021-07-13T05:20:40,044 adding 'jcvi/algorithms/matrix.py' 2021-07-13T05:20:40,045 adding 'jcvi/algorithms/maxsum.py' 2021-07-13T05:20:40,046 adding 'jcvi/algorithms/ml.py' 2021-07-13T05:20:40,048 adding 'jcvi/algorithms/supermap.py' 2021-07-13T05:20:40,050 adding 'jcvi/algorithms/tsp.py' 2021-07-13T05:20:40,052 adding 'jcvi/annotation/__init__.py' 2021-07-13T05:20:40,053 adding 'jcvi/annotation/__main__.py' 2021-07-13T05:20:40,056 adding 'jcvi/annotation/ahrd.py' 2021-07-13T05:20:40,058 adding 'jcvi/annotation/automaton.py' 2021-07-13T05:20:40,060 adding 'jcvi/annotation/depth.py' 2021-07-13T05:20:40,061 adding 'jcvi/annotation/evm.py' 2021-07-13T05:20:40,064 adding 'jcvi/annotation/maker.py' 2021-07-13T05:20:40,067 adding 'jcvi/annotation/pasa.py' 2021-07-13T05:20:40,069 adding 'jcvi/annotation/qc.py' 2021-07-13T05:20:40,075 adding 'jcvi/annotation/reformat.py' 2021-07-13T05:20:40,077 adding 'jcvi/annotation/stats.py' 2021-07-13T05:20:40,079 adding 'jcvi/annotation/train.py' 2021-07-13T05:20:40,081 adding 'jcvi/apps/__init__.py' 2021-07-13T05:20:40,082 adding 'jcvi/apps/__main__.py' 2021-07-13T05:20:40,084 adding 'jcvi/apps/align.py' 2021-07-13T05:20:40,093 adding 'jcvi/apps/base.py' 2021-07-13T05:20:40,096 adding 'jcvi/apps/biomart.py' 2021-07-13T05:20:40,098 adding 'jcvi/apps/blastplus.py' 2021-07-13T05:20:40,100 adding 'jcvi/apps/bowtie.py' 2021-07-13T05:20:40,102 adding 'jcvi/apps/bwa.py' 2021-07-13T05:20:40,104 adding 'jcvi/apps/cdhit.py' 2021-07-13T05:20:40,107 adding 'jcvi/apps/emboss.py' 2021-07-13T05:20:40,110 adding 'jcvi/apps/fetch.py' 2021-07-13T05:20:40,113 adding 'jcvi/apps/gbsubmit.py' 2021-07-13T05:20:40,115 adding 'jcvi/apps/gmap.py' 2021-07-13T05:20:40,118 adding 'jcvi/apps/grid.py' 2021-07-13T05:20:40,123 adding 'jcvi/apps/ks.py' 2021-07-13T05:20:40,126 adding 'jcvi/apps/lastz.py' 2021-07-13T05:20:40,128 adding 'jcvi/apps/mask.py' 2021-07-13T05:20:40,133 adding 'jcvi/apps/phylo.py' 2021-07-13T05:20:40,135 adding 'jcvi/apps/r.py' 2021-07-13T05:20:40,137 adding 'jcvi/apps/restriction.py' 2021-07-13T05:20:40,138 adding 'jcvi/apps/script.py' 2021-07-13T05:20:40,141 adding 'jcvi/apps/softlink.py' 2021-07-13T05:20:40,146 adding 'jcvi/apps/uclust.py' 2021-07-13T05:20:40,148 adding 'jcvi/apps/uniprot.py' 2021-07-13T05:20:40,149 adding 'jcvi/apps/vecscreen.py' 2021-07-13T05:20:40,151 adding 'jcvi/assembly/__init__.py' 2021-07-13T05:20:40,152 adding 'jcvi/assembly/__main__.py' 2021-07-13T05:20:40,163 adding 'jcvi/assembly/allmaps.py' 2021-07-13T05:20:40,166 adding 'jcvi/assembly/allpaths.py' 2021-07-13T05:20:40,168 adding 'jcvi/assembly/automaton.py' 2021-07-13T05:20:40,169 adding 'jcvi/assembly/base.py' 2021-07-13T05:20:40,174 adding 'jcvi/assembly/ca.py' 2021-07-13T05:20:40,226 adding 'jcvi/assembly/chic.cpython-37m-arm-linux-gnueabihf.so' 2021-07-13T05:20:40,230 adding 'jcvi/assembly/chic.pyx' 2021-07-13T05:20:40,232 adding 'jcvi/assembly/coverage.py' 2021-07-13T05:20:40,234 adding 'jcvi/assembly/gaps.py' 2021-07-13T05:20:40,236 adding 'jcvi/assembly/geneticmap.py' 2021-07-13T05:20:40,241 adding 'jcvi/assembly/goldenpath.py' 2021-07-13T05:20:40,250 adding 'jcvi/assembly/hic.py' 2021-07-13T05:20:40,255 adding 'jcvi/assembly/kmer.py' 2021-07-13T05:20:40,258 adding 'jcvi/assembly/opticalmap.py' 2021-07-13T05:20:40,261 adding 'jcvi/assembly/patch.py' 2021-07-13T05:20:40,264 adding 'jcvi/assembly/postprocess.py' 2021-07-13T05:20:40,267 adding 'jcvi/assembly/preprocess.py' 2021-07-13T05:20:40,270 adding 'jcvi/assembly/sim.py' 2021-07-13T05:20:40,272 adding 'jcvi/assembly/soap.py' 2021-07-13T05:20:40,485 adding 'jcvi/assembly/syntenypath.py' 2021-07-13T05:20:40,489 adding 'jcvi/assembly/trinity.py' 2021-07-13T05:20:40,494 adding 'jcvi/compara/__init__.py' 2021-07-13T05:20:40,496 adding 'jcvi/compara/__main__.py' 2021-07-13T05:20:40,499 adding 'jcvi/compara/blastfilter.py' 2021-07-13T05:20:40,506 adding 'jcvi/compara/catalog.py' 2021-07-13T05:20:40,510 adding 'jcvi/compara/fractionation.py' 2021-07-13T05:20:40,514 adding 'jcvi/compara/pad.py' 2021-07-13T05:20:40,516 adding 'jcvi/compara/phylogeny.py' 2021-07-13T05:20:40,517 adding 'jcvi/compara/quota.py' 2021-07-13T05:20:40,519 adding 'jcvi/compara/reconstruct.py' 2021-07-13T05:20:40,521 adding 'jcvi/compara/synfind.py' 2021-07-13T05:20:40,530 adding 'jcvi/compara/synteny.py' 2021-07-13T05:20:40,533 adding 'jcvi/formats/__init__.py' 2021-07-13T05:20:40,534 adding 'jcvi/formats/__main__.py' 2021-07-13T05:20:40,543 adding 'jcvi/formats/agp.py' 2021-07-13T05:20:40,548 adding 'jcvi/formats/base.py' 2021-07-13T05:20:40,558 adding 'jcvi/formats/bed.py' 2021-07-13T05:20:40,564 adding 'jcvi/formats/blast.py' 2021-07-13T05:20:40,671 adding 'jcvi/formats/cblast.cpython-37m-arm-linux-gnueabihf.so' 2021-07-13T05:20:40,683 adding 'jcvi/formats/cblast.pyx' 2021-07-13T05:20:40,685 adding 'jcvi/formats/cdt.py' 2021-07-13T05:20:40,688 adding 'jcvi/formats/chain.py' 2021-07-13T05:20:40,895 adding 'jcvi/formats/contig.py' 2021-07-13T05:20:40,899 adding 'jcvi/formats/coords.py' 2021-07-13T05:20:40,903 adding 'jcvi/formats/excel.py' 2021-07-13T05:20:40,921 adding 'jcvi/formats/fasta.py' 2021-07-13T05:20:40,926 adding 'jcvi/formats/fastq.py' 2021-07-13T05:20:40,929 adding 'jcvi/formats/genbank.py' 2021-07-13T05:20:40,946 adding 'jcvi/formats/gff.py' 2021-07-13T05:20:40,949 adding 'jcvi/formats/html.py' 2021-07-13T05:20:40,951 adding 'jcvi/formats/maf.py' 2021-07-13T05:20:40,953 adding 'jcvi/formats/obo.py' 2021-07-13T05:20:40,955 adding 'jcvi/formats/paf.py' 2021-07-13T05:20:40,957 adding 'jcvi/formats/pdf.py' 2021-07-13T05:20:40,960 adding 'jcvi/formats/psl.py' 2021-07-13T05:20:40,961 adding 'jcvi/formats/pyblast.py' 2021-07-13T05:20:40,965 adding 'jcvi/formats/sam.py' 2021-07-13T05:20:40,967 adding 'jcvi/formats/sizes.py' 2021-07-13T05:20:40,971 adding 'jcvi/formats/vcf.py' 2021-07-13T05:20:40,974 adding 'jcvi/graphics/__init__.py' 2021-07-13T05:20:40,975 adding 'jcvi/graphics/__main__.py' 2021-07-13T05:20:40,978 adding 'jcvi/graphics/align.py' 2021-07-13T05:20:40,981 adding 'jcvi/graphics/assembly.py' 2021-07-13T05:20:40,985 adding 'jcvi/graphics/base.py' 2021-07-13T05:20:40,989 adding 'jcvi/graphics/blastplot.py' 2021-07-13T05:20:41,202 adding 'jcvi/graphics/chromosome.py' 2021-07-13T05:20:41,206 adding 'jcvi/graphics/coverage.py' 2021-07-13T05:20:41,211 adding 'jcvi/graphics/dotplot.py' 2021-07-13T05:20:41,218 adding 'jcvi/graphics/glyph.py' 2021-07-13T05:20:41,223 adding 'jcvi/graphics/grabseeds.py' 2021-07-13T05:20:41,225 adding 'jcvi/graphics/graph.py' 2021-07-13T05:20:41,227 adding 'jcvi/graphics/heatmap.py' 2021-07-13T05:20:41,229 adding 'jcvi/graphics/histogram.py' 2021-07-13T05:20:41,231 adding 'jcvi/graphics/karyotype.py' 2021-07-13T05:20:41,236 adding 'jcvi/graphics/landscape.py' 2021-07-13T05:20:41,238 adding 'jcvi/graphics/logo.py' 2021-07-13T05:20:41,239 adding 'jcvi/graphics/mummerplot.py' 2021-07-13T05:20:41,243 adding 'jcvi/graphics/synteny.py' 2021-07-13T05:20:41,245 adding 'jcvi/graphics/table.py' 2021-07-13T05:20:41,249 adding 'jcvi/graphics/tree.py' 2021-07-13T05:20:41,252 adding 'jcvi/graphics/wheel.py' 2021-07-13T05:20:41,253 adding 'jcvi/graphics/whisker.py' 2021-07-13T05:20:41,256 adding 'jcvi/projects/__init__.py' 2021-07-13T05:20:41,257 adding 'jcvi/projects/__main__.py' 2021-07-13T05:20:41,260 adding 'jcvi/projects/age.py' 2021-07-13T05:20:41,262 adding 'jcvi/projects/alfalfa.py' 2021-07-13T05:20:41,265 adding 'jcvi/projects/allmaps.py' 2021-07-13T05:20:41,267 adding 'jcvi/projects/bites.py' 2021-07-13T05:20:41,269 adding 'jcvi/projects/heterosis.py' 2021-07-13T05:20:41,271 adding 'jcvi/projects/ies.py' 2021-07-13T05:20:41,275 adding 'jcvi/projects/misc.py' 2021-07-13T05:20:41,279 adding 'jcvi/projects/napus.py' 2021-07-13T05:20:41,281 adding 'jcvi/projects/pineapple.py' 2021-07-13T05:20:41,283 adding 'jcvi/projects/pistachio.py' 2021-07-13T05:20:41,292 adding 'jcvi/projects/str.py' 2021-07-13T05:20:41,296 adding 'jcvi/projects/sugarcane.py' 2021-07-13T05:20:41,299 adding 'jcvi/projects/synfind.py' 2021-07-13T05:20:41,303 adding 'jcvi/projects/tgbs.py' 2021-07-13T05:20:41,305 adding 'jcvi/projects/vanilla.py' 2021-07-13T05:20:41,307 adding 'jcvi/utils/__init__.py' 2021-07-13T05:20:41,309 adding 'jcvi/utils/__main__.py' 2021-07-13T05:20:41,312 adding 'jcvi/utils/aws.py' 2021-07-13T05:20:41,314 adding 'jcvi/utils/cbook.py' 2021-07-13T05:20:41,315 adding 'jcvi/utils/console.py' 2021-07-13T05:20:41,317 adding 'jcvi/utils/db.py' 2021-07-13T05:20:41,319 adding 'jcvi/utils/ez_setup.py' 2021-07-13T05:20:41,322 adding 'jcvi/utils/grouper.py' 2021-07-13T05:20:41,325 adding 'jcvi/utils/orderedcollections.py' 2021-07-13T05:20:41,328 adding 'jcvi/utils/range.py' 2021-07-13T05:20:41,330 adding 'jcvi/utils/table.py' 2021-07-13T05:20:41,332 adding 'jcvi/utils/taxonomy.py' 2021-07-13T05:20:41,333 adding 'jcvi/utils/validator.py' 2021-07-13T05:20:41,335 adding 'jcvi/utils/webcolors.py' 2021-07-13T05:20:41,338 adding 'jcvi/utils/data/Airswing.ttf' 2021-07-13T05:20:41,357 adding 'jcvi/utils/data/Collegia.ttf' 2021-07-13T05:20:41,361 adding 'jcvi/utils/data/HookedUp.ttf' 2021-07-13T05:20:41,367 adding 'jcvi/utils/data/Humor-Sans.ttf' 2021-07-13T05:20:41,372 adding 'jcvi/utils/data/TREDs.meta.csv' 2021-07-13T05:20:41,374 adding 'jcvi/utils/data/__init__.py' 2021-07-13T05:20:41,376 adding 'jcvi/utils/data/adapters.fasta' 2021-07-13T05:20:41,377 adding 'jcvi/utils/data/blosum80.mat' 2021-07-13T05:20:41,380 adding 'jcvi/utils/data/chrY.hg38.unique_ccn.gc' 2021-07-13T05:20:41,381 adding 'jcvi/utils/data/colorchecker.txt' 2021-07-13T05:20:41,387 adding 'jcvi/utils/data/hg38.band.txt' 2021-07-13T05:20:41,390 adding 'jcvi/utils/data/hg38.chrom.sizes' 2021-07-13T05:20:41,391 adding 'jcvi/utils/data/instance.json' 2021-07-13T05:20:41,393 adding 'jcvi/variation/__init__.py' 2021-07-13T05:20:41,395 adding 'jcvi/variation/__main__.py' 2021-07-13T05:20:41,400 adding 'jcvi/variation/cnv.py' 2021-07-13T05:20:41,403 adding 'jcvi/variation/deconvolute.py' 2021-07-13T05:20:41,405 adding 'jcvi/variation/delly.py' 2021-07-13T05:20:41,408 adding 'jcvi/variation/impute.py' 2021-07-13T05:20:41,409 adding 'jcvi/variation/phase.py' 2021-07-13T05:20:41,412 adding 'jcvi/variation/snp.py' 2021-07-13T05:20:41,419 adding 'jcvi/variation/str.py' 2021-07-13T05:20:41,422 adding 'jcvi/variation/tassel.py' 2021-07-13T05:20:41,426 adding 'jcvi-1.1.16.dist-info/LICENSE' 2021-07-13T05:20:41,429 adding 'jcvi-1.1.16.dist-info/METADATA' 2021-07-13T05:20:41,431 adding 'jcvi-1.1.16.dist-info/WHEEL' 2021-07-13T05:20:41,433 adding 'jcvi-1.1.16.dist-info/top_level.txt' 2021-07-13T05:20:41,435 adding 'jcvi-1.1.16.dist-info/RECORD' 2021-07-13T05:20:41,470 removing build/bdist.linux-armv7l/wheel 2021-07-13T05:20:42,062 Building wheel for jcvi (setup.py): finished with status 'done' 2021-07-13T05:20:42,080 Created wheel for jcvi: filename=jcvi-1.1.16-cp37-cp37m-linux_armv7l.whl size=1154114 sha256=5ecd75ef6cd0efc891fa930dd493200816b91748175119dbf3c369adee0cea43 2021-07-13T05:20:42,080 Stored in directory: /tmp/pip-ephem-wheel-cache-dxin77vo/wheels/44/09/f9/6f643607e08329f43bc11e6f24c3ae50f16001dff90f70d3f8 2021-07-13T05:20:42,103 Successfully built jcvi 2021-07-13T05:20:42,160 Removed build tracker: '/tmp/pip-req-tracker-gcgpkvko'