2021-07-13T06:16:29,550 Created temporary directory: /tmp/pip-ephem-wheel-cache-spkxrj1a 2021-07-13T06:16:29,552 Created temporary directory: /tmp/pip-req-tracker-y80xsjxp 2021-07-13T06:16:29,553 Initialized build tracking at /tmp/pip-req-tracker-y80xsjxp 2021-07-13T06:16:29,553 Created build tracker: /tmp/pip-req-tracker-y80xsjxp 2021-07-13T06:16:29,553 Entered build tracker: /tmp/pip-req-tracker-y80xsjxp 2021-07-13T06:16:29,554 Created temporary directory: /tmp/pip-wheel-it743rap 2021-07-13T06:16:29,582 1 location(s) to search for versions of whatshap: 2021-07-13T06:16:29,582 * https://pypi.org/simple/whatshap/ 2021-07-13T06:16:29,583 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2021-07-13T06:16:29,583 Getting page https://pypi.org/simple/whatshap/ 2021-07-13T06:16:29,585 Found index url https://pypi.org/simple 2021-07-13T06:16:29,773 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 (from https://pypi.org/simple/whatshap/), version: 0.9 2021-07-13T06:16:29,773 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz#sha256=864d4ecfc33eac7265452f5a2f468a830779afc53e723119ecac5ecf73255acc (from https://pypi.org/simple/whatshap/), version: 0.10 2021-07-13T06:16:29,774 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz#sha256=d0367a4dd0adf288d30a9a87b565e4f141745bec3ea825cb85ac3409a593bde9 (from https://pypi.org/simple/whatshap/), version: 0.11 2021-07-13T06:16:29,774 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz#sha256=c65060155dc901e4d4bd48077706660e5b214540d4dc20575a8b2146fb6a11f9 (from https://pypi.org/simple/whatshap/), version: 0.12 2021-07-13T06:16:29,774 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz#sha256=529646db74b2cac9f12ebd530bd7bb40cb073c367894bf66c5994c1d7f32b56a (from https://pypi.org/simple/whatshap/), version: 0.13 2021-07-13T06:16:29,774 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz#sha256=dd6076e67c5a4ce75d2510b3dbdd3c1e524124be62655f06c82f7d9fce4c5643 (from https://pypi.org/simple/whatshap/), version: 0.14 2021-07-13T06:16:29,775 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz#sha256=7b5781f1138b1830c4627451d1d5c77e7f2a3c5403510d9ab2a63f545911415b (from https://pypi.org/simple/whatshap/), version: 0.14.1 2021-07-13T06:16:29,775 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 (from https://pypi.org/simple/whatshap/), version: 0.15 2021-07-13T06:16:29,775 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz#sha256=1df54d8705fb0451cc0a640918842481087f7b741778dfb4100cc1f4f60f48fe (from https://pypi.org/simple/whatshap/), version: 0.16 2021-07-13T06:16:29,775 Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz#sha256=8ad1c66789fe5fe957b3695902dae3c3fd4e67f79b9e349b92b532e9ff618933 (from https://pypi.org/simple/whatshap/), version: 0.17 2021-07-13T06:16:29,793 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl#sha256=4a09adc24c6db3bd525667ac2559181dc94ee203a64f488dfce1ac38cbf44ba5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-13T06:16:29,793 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl#sha256=1c99980629655e58a34496b0e1b1c9123dddd0797a13cf681dcf83f92a6f33e0 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-13T06:16:29,794 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl#sha256=fdadadbed86cc7a7abd8f9ef3d55fe280eda957473db03dc30ad06ace6b877bd (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-13T06:16:29,794 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl#sha256=2e189cb51c2527444dada90f8fd2355ddfe8d9d35aca386330e63bc46c2d2699 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-13T06:16:29,795 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz#sha256=c566130eca57fe9e34f5193390856dc44171c397f9708c49fcbf204e575b6695 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2021-07-13T06:16:29,796 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl#sha256=ff945c6a0406f328771dbbc86970bd48a0327833ca8e96ad836a55ab32ae99d4 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,796 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl#sha256=78bacd81697878129a6ff39f9474792f85b95e6fde7bfa30371b87a24d5e9d3a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,797 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl#sha256=62318377e996d1f3040cbfdb3462a3140dbdfd4113584c9000b530ca70bbf223 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,797 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz#sha256=fcf0495793998da94054bdc4c6d6f3f6b145a7befa07ac96275e5e2272979aa2 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2021-07-13T06:16:29,798 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl#sha256=93af99ab08fac60bb3e46cde68978619f095e1b47490f59e4085f338ad715b46 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,798 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl#sha256=94c04469069a87636c8aaf88d9f3e33022864de633327fedfdedd8da2bc4c6aa (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,799 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl#sha256=7821711be901f898437a6be4993a15e77edbb59683ffa76d3dc9bc1bf855769a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,799 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl#sha256=9e3a3169de452412c4e5cfe3220c0d51178d4811f33183e53069c57de49253ae (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-13T06:16:29,800 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz#sha256=4e6486e6ce2babf55a225dd9e0030df6fcc27629d34803428cbe88a79137bb6f (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2021-07-13T06:16:29,800 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2021-07-13T06:16:29,803 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2021-07-13T06:16:29,822 Collecting whatshap==0.15 2021-07-13T06:16:29,824 Created temporary directory: /tmp/pip-unpack-0lvpe8t6 2021-07-13T06:16:30,019 Downloading whatshap-0.15.tar.gz (443 kB) 2021-07-13T06:16:30,423 Added whatshap==0.15 from https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 to build tracker '/tmp/pip-req-tracker-y80xsjxp' 2021-07-13T06:16:30,424 Running setup.py (path:/tmp/pip-wheel-it743rap/whatshap_d9405de12c0c489aa60107f391f2b31b/setup.py) egg_info for package whatshap 2021-07-13T06:16:30,425 Created temporary directory: /tmp/pip-pip-egg-info-lmjqtbli 2021-07-13T06:16:30,425 Running command python setup.py egg_info 2021-07-13T06:16:31,456 running egg_info 2021-07-13T06:16:31,458 creating /tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info 2021-07-13T06:16:31,459 writing /tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/PKG-INFO 2021-07-13T06:16:31,461 writing dependency_links to /tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/dependency_links.txt 2021-07-13T06:16:31,462 writing entry points to /tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/entry_points.txt 2021-07-13T06:16:31,464 writing requirements to /tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/requires.txt 2021-07-13T06:16:31,465 writing top-level names to /tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/top_level.txt 2021-07-13T06:16:31,466 writing manifest file '/tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/SOURCES.txt' 2021-07-13T06:16:31,478 reading manifest file '/tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/SOURCES.txt' 2021-07-13T06:16:31,479 reading manifest template 'MANIFEST.in' 2021-07-13T06:16:31,482 warning: no files found matching 'whatshap/readselect.cpp' 2021-07-13T06:16:31,484 warning: no files found matching 'src/dptable.h' 2021-07-13T06:16:31,484 warning: no files found matching 'src/columncostcomputer.h' 2021-07-13T06:16:31,494 writing manifest file '/tmp/pip-pip-egg-info-lmjqtbli/whatshap.egg-info/SOURCES.txt' 2021-07-13T06:16:31,561 Source in /tmp/pip-wheel-it743rap/whatshap_d9405de12c0c489aa60107f391f2b31b has version 0.15, which satisfies requirement whatshap==0.15 from https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 2021-07-13T06:16:31,562 Removed whatshap==0.15 from https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 from build tracker '/tmp/pip-req-tracker-y80xsjxp' 2021-07-13T06:16:31,566 Created temporary directory: /tmp/pip-unpack-rly279nv 2021-07-13T06:16:31,567 Building wheels for collected packages: whatshap 2021-07-13T06:16:31,571 Created temporary directory: /tmp/pip-wheel-oqc1o717 2021-07-13T06:16:31,571 Building wheel for whatshap (setup.py): started 2021-07-13T06:16:31,572 Destination directory: /tmp/pip-wheel-oqc1o717 2021-07-13T06:16:31,572 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-it743rap/whatshap_d9405de12c0c489aa60107f391f2b31b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-it743rap/whatshap_d9405de12c0c489aa60107f391f2b31b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oqc1o717 2021-07-13T06:16:32,603 running bdist_wheel 2021-07-13T06:16:32,607 running build 2021-07-13T06:16:32,608 running build_py 2021-07-13T06:16:32,614 creating build 2021-07-13T06:16:32,614 creating build/lib.linux-armv7l-3.9 2021-07-13T06:16:32,615 creating build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,616 copying whatshap/phase.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,619 copying whatshap/haplotag.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,621 copying whatshap/unphase.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,623 copying whatshap/variants.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,625 copying whatshap/math.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,627 copying whatshap/stats.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,630 copying whatshap/vcf.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,633 copying whatshap/graph.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,635 copying whatshap/hapcut2vcf.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,637 copying whatshap/compare.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,640 copying whatshap/verification.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,642 copying whatshap/__init__.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,644 copying whatshap/pedigree.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,646 copying whatshap/timer.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,648 copying whatshap/genotype.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,651 copying whatshap/_version.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,654 copying whatshap/bam.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,656 copying whatshap/__main__.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,659 copying whatshap/args.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,662 copying whatshap/coverage.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,664 copying whatshap/utils.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,668 UPDATING build/lib.linux-armv7l-3.9/whatshap/_version.py 2021-07-13T06:16:32,670 set build/lib.linux-armv7l-3.9/whatshap/_version.py to '0.15' 2021-07-13T06:16:32,671 running build_ext 2021-07-13T06:16:32,677 building 'whatshap.core' extension 2021-07-13T06:16:32,679 creating build/temp.linux-armv7l-3.9 2021-07-13T06:16:32,680 creating build/temp.linux-armv7l-3.9/src 2021-07-13T06:16:32,682 creating build/temp.linux-armv7l-3.9/whatshap 2021-07-13T06:16:32,683 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-3.9/src/backwardcolumniterator.o -std=c++11 2021-07-13T06:16:34,314 In file included from /usr/include/c++/10/cassert:44, 2021-07-13T06:16:34,314 from src/backwardcolumniterator.cpp:1: 2021-07-13T06:16:34,314 src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’: 2021-07-13T06:16:34,314 src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T06:16:34,314 121 | assert(k < positions->size()); 2021-07-13T06:16:34,315 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:34,315 src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-13T06:16:34,315 140 | assert(active_entry < read->getVariantCount()); 2021-07-13T06:16:34,315 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:35,872 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-3.9/src/columnindexingiterator.o -std=c++11 2021-07-13T06:16:36,985 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2021-07-13T06:16:36,986 src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T06:16:36,986 90 | for(int j=0; j< parent->read_ids.size(); ++j) { 2021-07-13T06:16:36,986 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:36,986 src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-13T06:16:36,987 92 | if(m != -1) { 2021-07-13T06:16:36,987 | ~~^~~~~ 2021-07-13T06:16:36,987 src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable] 2021-07-13T06:16:36,987 89 | unsigned int s = 1; 2021-07-13T06:16:36,987 | ^ 2021-07-13T06:16:37,273 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-3.9/src/columnindexingscheme.o -std=c++11 2021-07-13T06:16:38,379 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2021-07-13T06:16:38,380 src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T06:16:38,380 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T06:16:38,380 22 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T06:16:38,383 71 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T06:16:38,383 71 | while ((iread_ids.size()) && (j > ColumnIterator::get_next()’: 2021-07-13T06:16:40,456 src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-13T06:16:40,456 105 | assert(list_it->active_entry < read->getVariantCount()); 2021-07-13T06:16:40,456 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:40,473 src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’: 2021-07-13T06:16:40,473 src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-13T06:16:40,474 161 | assert(active_entry < read->getVariantCount()); 2021-07-13T06:16:40,474 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:42,079 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/entry.cpp -o build/temp.linux-armv7l-3.9/src/entry.o -std=c++11 2021-07-13T06:16:42,960 src/entry.cpp: In function ‘std::ostream& operator<<(std::ostream&, const Entry&)’: 2021-07-13T06:16:42,961 src/entry.cpp:59:40: warning: control reaches end of non-void function [-Wreturn-type] 2021-07-13T06:16:42,961 59 | out << ',' << ((int)e.phred_score) << ')'; 2021-07-13T06:16:42,961 | ^~~ 2021-07-13T06:16:43,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-3.9/src/genotypecolumncostcomputer.o -std=c++11 2021-07-13T06:16:45,843 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-3.9/src/genotypedistribution.o -std=c++11 2021-07-13T06:16:46,902 src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’: 2021-07-13T06:16:46,903 src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-13T06:16:46,903 55 | if (i == best_index) continue; 2021-07-13T06:16:46,903 | ~~^~~~~~~~~~~~~ 2021-07-13T06:16:47,294 In file included from /usr/include/c++/10/vector:72, 2021-07-13T06:16:47,295 from src/genotypedistribution.h:4, 2021-07-13T06:16:47,295 from src/genotypedistribution.cpp:5: 2021-07-13T06:16:47,295 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T06:16:47,295 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T06:16:47,295 426 | vector<_Tp, _Alloc>:: 2021-07-13T06:16:47,295 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:47,328 In file included from /usr/include/c++/10/vector:67, 2021-07-13T06:16:47,328 from src/genotypedistribution.h:4, 2021-07-13T06:16:47,329 from src/genotypedistribution.cpp:5: 2021-07-13T06:16:47,329 /usr/include/c++/10/bits/stl_vector.h: In constructor ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’: 2021-07-13T06:16:47,329 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T06:16:47,329 1198 | _M_realloc_insert(end(), __x); 2021-07-13T06:16:47,329 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T06:16:47,329 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T06:16:47,329 1198 | _M_realloc_insert(end(), __x); 2021-07-13T06:16:47,330 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T06:16:47,330 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T06:16:47,330 1198 | _M_realloc_insert(end(), __x); 2021-07-13T06:16:47,330 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T06:16:47,500 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-3.9/src/genotypedptable.o -std=c++11 2021-07-13T06:16:49,639 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’: 2021-07-13T06:16:49,640 src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable] 2021-07-13T06:16:49,640 61 | size_t column_count = input_column_iterator.get_column_count(); 2021-07-13T06:16:49,640 | ^~~~~~~~~~~~ 2021-07-13T06:16:49,693 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’: 2021-07-13T06:16:49,693 src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable] 2021-07-13T06:16:49,693 91 | unsigned int transmission_configurations = std::pow(4, pedigree->triple_count()); 2021-07-13T06:16:49,693 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:16:49,697 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’: 2021-07-13T06:16:49,697 src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-13T06:16:49,697 152 | if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) { 2021-07-13T06:16:49,697 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-13T06:16:49,700 src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’: 2021-07-13T06:16:49,701 src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable] 2021-07-13T06:16:49,701 178 | size_t k = (size_t)sqrt(input_column_iterator.get_column_count()); 2021-07-13T06:16:49,701 | ^ 2021-07-13T06:16:53,416 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/genotyper.cpp -o build/temp.linux-armv7l-3.9/src/genotyper.o -std=c++11 2021-07-13T06:16:56,094 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/graycodes.cpp -o build/temp.linux-armv7l-3.9/src/graycodes.o -std=c++11 2021-07-13T06:16:57,137 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/indexset.cpp -o build/temp.linux-armv7l-3.9/src/indexset.o -std=c++11 2021-07-13T06:16:58,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigree.cpp -o build/temp.linux-armv7l-3.9/src/pedigree.o -std=c++11 2021-07-13T06:17:00,048 In file included from /usr/include/c++/10/cassert:44, 2021-07-13T06:17:00,048 from src/pedigree.cpp:4: 2021-07-13T06:17:00,048 src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector, std::vector)’: 2021-07-13T06:17:00,048 src/pedigree.cpp:30:26: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-13T06:17:00,049 30 | assert(genotypes.size() == variant_count); 2021-07-13T06:17:00,049 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-13T06:17:00,049 src/pedigree.cpp:31:37: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-13T06:17:00,049 31 | assert(genotype_likelihoods.size() == variant_count); 2021-07-13T06:17:00,049 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 2021-07-13T06:17:00,058 src/pedigree.cpp: In member function ‘unsigned int Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’: 2021-07-13T06:17:00,059 src/pedigree.cpp:68:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-13T06:17:00,059 68 | assert(variant_index < variant_count); 2021-07-13T06:17:00,059 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-13T06:17:00,059 src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’: 2021-07-13T06:17:00,059 src/pedigree.cpp:79:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 2021-07-13T06:17:00,060 79 | assert(variant_index < variant_count); 2021-07-13T06:17:00,060 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-13T06:17:00,071 src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’: 2021-07-13T06:17:00,071 src/pedigree.cpp:110:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare] 2021-07-13T06:17:00,071 110 | for (size_t j=0; j&, size_t, const std::vector&, const Pedigree*, const PedigreePartitions&, bool)’: 2021-07-13T06:17:03,950 src/pedigreecolumncostcomputer.cpp:24:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-13T06:17:03,950 24 | for (unsigned int i = 0; i < (1< PedigreeColumnCostComputer::get_alleles()’: 2021-07-13T06:17:03,987 src/pedigreecolumncostcomputer.cpp:118:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable] 2021-07-13T06:17:03,987 118 | unsigned int second_best_cost = numeric_limits < unsigned int >::max(); 2021-07-13T06:17:03,988 | ^~~~~~~~~~~~~~~~ 2021-07-13T06:17:04,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-3.9/src/pedigreedptable.o -std=c++11 2021-07-13T06:17:11,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-3.9/src/pedigreepartitions.o -std=c++11 2021-07-13T06:17:12,875 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-3.9/src/phredgenotypelikelihoods.o -std=c++11 2021-07-13T06:17:14,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/read.cpp -o build/temp.linux-armv7l-3.9/src/read.o -std=c++11 2021-07-13T06:17:17,100 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/readset.cpp -o build/temp.linux-armv7l-3.9/src/readset.o -std=c++11 2021-07-13T06:17:21,557 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-3.9/src/transitionprobabilitycomputer.o -std=c++11 2021-07-13T06:17:23,972 In file included from /usr/include/c++/10/vector:72, 2021-07-13T06:17:23,973 from src/vector2d.h:5, 2021-07-13T06:17:23,973 from src/transitionprobabilitycomputer.h:5, 2021-07-13T06:17:23,973 from src/transitionprobabilitycomputer.cpp:1: 2021-07-13T06:17:23,973 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: 2021-07-13T06:17:23,973 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2021-07-13T06:17:23,973 426 | vector<_Tp, _Alloc>:: 2021-07-13T06:17:23,974 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:24,463 /usr/include/c++/10/bits/vector.tcc: In constructor ‘TransitionProbabilityComputer::TransitionProbabilityComputer(size_t, unsigned int, const Pedigree*, const std::vector&)’: 2021-07-13T06:17:24,464 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2021-07-13T06:17:24,464 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T06:17:24,464 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:25,178 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -UNDEBUG -I/usr/include/python3.9 -c whatshap/core.cpp -o build/temp.linux-armv7l-3.9/whatshap/core.o -std=c++11 2021-07-13T06:17:27,842 whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_15PedigreeDPTable_4get_super_reads(__pyx_obj_8whatshap_4core_PedigreeDPTable*)’: 2021-07-13T06:17:27,842 whatshap/core.cpp:7066:33: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-13T06:17:27,842 7066 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2021-07-13T06:17:27,843 | ~~~~~~~~~~^~~~~~~~~~~ 2021-07-13T06:17:28,362 whatshap/core.cpp: In function ‘int __Pyx_modinit_type_init_code()’: 2021-07-13T06:17:28,362 whatshap/core.cpp:17947:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,362 17947 | __pyx_type_8whatshap_4core_NumericSampleIds.tp_print = 0; 2021-07-13T06:17:28,363 | ^~~~~~~~ 2021-07-13T06:17:28,364 whatshap/core.cpp:17955:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,364 17955 | __pyx_type_8whatshap_4core_Read.tp_print = 0; 2021-07-13T06:17:28,364 | ^~~~~~~~ 2021-07-13T06:17:28,367 whatshap/core.cpp:18003:38: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,368 18003 | __pyx_type_8whatshap_4core_ReadSet.tp_print = 0; 2021-07-13T06:17:28,368 | ^~~~~~~~ 2021-07-13T06:17:28,369 whatshap/core.cpp:18011:39: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,369 18011 | __pyx_type_8whatshap_4core_Pedigree.tp_print = 0; 2021-07-13T06:17:28,369 | ^~~~~~~~ 2021-07-13T06:17:28,371 whatshap/core.cpp:18019:46: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,371 18019 | __pyx_type_8whatshap_4core_PedigreeDPTable.tp_print = 0; 2021-07-13T06:17:28,371 | ^~~~~~~~ 2021-07-13T06:17:28,372 whatshap/core.cpp:18027:55: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,372 18027 | __pyx_type_8whatshap_4core_PhredGenotypeLikelihoods.tp_print = 0; 2021-07-13T06:17:28,373 | ^~~~~~~~ 2021-07-13T06:17:28,374 whatshap/core.cpp:18035:46: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,374 18035 | __pyx_type_8whatshap_4core_GenotypeDPTable.tp_print = 0; 2021-07-13T06:17:28,374 | ^~~~~~~~ 2021-07-13T06:17:28,375 whatshap/core.cpp:18043:59: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,375 18043 | __pyx_type_8whatshap_4core___pyx_scope_struct____iter__.tp_print = 0; 2021-07-13T06:17:28,376 | ^~~~~~~~ 2021-07-13T06:17:28,376 whatshap/core.cpp:18049:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,377 18049 | __pyx_type_8whatshap_4core___pyx_scope_struct_1___iter__.tp_print = 0; 2021-07-13T06:17:28,377 | ^~~~~~~~ 2021-07-13T06:17:28,378 whatshap/core.cpp:18055:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,378 18055 | __pyx_type_8whatshap_4core___pyx_scope_struct_2___iter__.tp_print = 0; 2021-07-13T06:17:28,378 | ^~~~~~~~ 2021-07-13T06:17:28,379 whatshap/core.cpp:18061:100: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,379 18061 | __pyx_type_8whatshap_4core___pyx_scope_struct_3___pyx_f_8whatshap_4core_format_read_source_stats.tp_print = 0; 2021-07-13T06:17:28,379 | ^~~~~~~~ 2021-07-13T06:17:28,380 whatshap/core.cpp:18067:59: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T06:17:28,380 18067 | __pyx_type_8whatshap_4core___pyx_scope_struct_4_genexpr.tp_print = 0; 2021-07-13T06:17:28,381 | ^~~~~~~~ 2021-07-13T06:17:28,422 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T06:17:28,422 from /usr/include/python3.9/Python.h:97, 2021-07-13T06:17:28,422 from whatshap/core.cpp:56: 2021-07-13T06:17:28,422 whatshap/core.cpp: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2021-07-13T06:17:28,422 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,423 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,423 | ^ 2021-07-13T06:17:28,423 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,423 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-13T06:17:28,423 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,423 whatshap/core.cpp:19228:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,423 19228 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,423 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,424 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,424 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,424 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,424 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-13T06:17:28,425 | ^ 2021-07-13T06:17:28,425 whatshap/core.cpp:19228:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,425 19228 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,425 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,425 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T06:17:28,425 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T06:17:28,425 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,426 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,426 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,426 | ^ 2021-07-13T06:17:28,427 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,427 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-13T06:17:28,427 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,427 whatshap/core.cpp:19228:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,427 19228 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,427 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,427 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,427 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,428 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,428 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,429 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,429 | ^ 2021-07-13T06:17:28,429 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,429 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-13T06:17:28,429 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,429 whatshap/core.cpp:19228:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,429 19228 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,429 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,430 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,430 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,430 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,430 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,430 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-13T06:17:28,431 | ^ 2021-07-13T06:17:28,431 whatshap/core.cpp:19228:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,431 19228 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,431 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,431 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T06:17:28,431 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T06:17:28,431 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,432 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,432 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,432 | ^ 2021-07-13T06:17:28,432 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,433 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-13T06:17:28,433 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,433 whatshap/core.cpp:19228:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,433 19228 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,433 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,439 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,439 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,439 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,439 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,439 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,439 | ^ 2021-07-13T06:17:28,440 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,440 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-13T06:17:28,440 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,440 whatshap/core.cpp:19244:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,440 19244 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,440 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,440 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,440 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,441 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,441 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,441 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-13T06:17:28,441 | ^ 2021-07-13T06:17:28,441 whatshap/core.cpp:19244:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,441 19244 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,441 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,442 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T06:17:28,442 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T06:17:28,442 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,442 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,442 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,442 | ^ 2021-07-13T06:17:28,442 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,442 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-13T06:17:28,443 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,443 whatshap/core.cpp:19244:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,443 19244 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,443 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,443 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,443 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,443 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,443 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,444 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,444 | ^ 2021-07-13T06:17:28,444 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,444 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-13T06:17:28,444 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,444 whatshap/core.cpp:19244:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,444 19244 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,445 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,445 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,445 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,445 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,445 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,445 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-13T06:17:28,445 | ^ 2021-07-13T06:17:28,445 whatshap/core.cpp:19244:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,446 19244 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,446 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,446 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T06:17:28,446 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T06:17:28,446 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,446 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,446 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-13T06:17:28,447 | ^ 2021-07-13T06:17:28,447 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-13T06:17:28,447 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-13T06:17:28,447 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,447 whatshap/core.cpp:19244:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-13T06:17:28,447 19244 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T06:17:28,447 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,447 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T06:17:28,448 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T06:17:28,448 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:28,448 whatshap/core.cpp: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2021-07-13T06:17:28,448 whatshap/core.cpp:19414:45: warning: ‘PyObject* PyUnicode_FromUnicode(const Py_UNICODE*, Py_ssize_t)’ is deprecated [-Wdeprecated-declarations] 2021-07-13T06:17:28,448 19414 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-13T06:17:28,448 | ^ 2021-07-13T06:17:28,449 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T06:17:28,449 from /usr/include/python3.9/Python.h:97, 2021-07-13T06:17:28,449 from whatshap/core.cpp:56: 2021-07-13T06:17:28,449 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-13T06:17:28,449 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-13T06:17:28,449 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T06:17:29,329 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T06:17:29,391 Building wheel for whatshap (setup.py): finished with status 'error' 2021-07-13T06:17:29,392 ERROR: Failed building wheel for whatshap 2021-07-13T06:17:29,392 Running setup.py clean for whatshap 2021-07-13T06:17:29,393 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-it743rap/whatshap_d9405de12c0c489aa60107f391f2b31b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-it743rap/whatshap_d9405de12c0c489aa60107f391f2b31b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T06:17:30,457 running clean 2021-07-13T06:17:30,459 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T06:17:30,471 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T06:17:30,479 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T06:17:30,479 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T06:17:30,479 removing 'build' 2021-07-13T06:17:30,546 Failed to build whatshap 2021-07-13T06:17:30,547 ERROR: Failed to build one or more wheels 2021-07-13T06:17:30,547 Exception information: 2021-07-13T06:17:30,547 Traceback (most recent call last): 2021-07-13T06:17:30,547 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T06:17:30,547 status = self.run(options, args) 2021-07-13T06:17:30,547 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T06:17:30,547 return func(self, options, args) 2021-07-13T06:17:30,547 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T06:17:30,547 raise CommandError( 2021-07-13T06:17:30,547 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T06:17:30,551 Removed build tracker: '/tmp/pip-req-tracker-y80xsjxp'