2021-07-13T07:01:25,666 Created temporary directory: /tmp/pip-ephem-wheel-cache-8tnkrutk 2021-07-13T07:01:25,669 Created temporary directory: /tmp/pip-req-tracker-0cj0pyyz 2021-07-13T07:01:25,670 Initialized build tracking at /tmp/pip-req-tracker-0cj0pyyz 2021-07-13T07:01:25,670 Created build tracker: /tmp/pip-req-tracker-0cj0pyyz 2021-07-13T07:01:25,670 Entered build tracker: /tmp/pip-req-tracker-0cj0pyyz 2021-07-13T07:01:25,671 Created temporary directory: /tmp/pip-wheel-83wq3xit 2021-07-13T07:01:25,700 1 location(s) to search for versions of genomelake: 2021-07-13T07:01:25,700 * https://pypi.org/simple/genomelake/ 2021-07-13T07:01:25,701 Fetching project page and analyzing links: https://pypi.org/simple/genomelake/ 2021-07-13T07:01:25,701 Getting page https://pypi.org/simple/genomelake/ 2021-07-13T07:01:25,703 Found index url https://pypi.org/simple 2021-07-13T07:01:25,793 Found link https://files.pythonhosted.org/packages/61/ff/e44bf090afa15196ab8b561fa006df736d03a9112614f613f097f5232b20/genomelake-0.1.1.tar.gz#sha256=bd43c5feb0850cb645753235a7aa42672bbf019b2a71aef25ea69ebc59aac4c6 (from https://pypi.org/simple/genomelake/), version: 0.1.1 2021-07-13T07:01:25,794 Found link https://files.pythonhosted.org/packages/7f/a4/3d4211b0cf4ef57bb2103b37cfe8d0a4484f77d45bf5969fc02d2521fc4a/genomelake-0.1.2.tar.gz#sha256=26667a7e3b01cfb65952ab128569d2302102bea96f1a63f2f26415f51ace9be1 (from https://pypi.org/simple/genomelake/), version: 0.1.2 2021-07-13T07:01:25,794 Found link https://files.pythonhosted.org/packages/7d/2c/aadd37728e26d89dbbe47200d60d861b11e4416b707fa4ec16cf9e1f1141/genomelake-0.1.3.tar.gz#sha256=a4987f9212e122e8f6ded701bfbecc4d4c7e60efe6e999e71cc1f1f66b832b30 (from https://pypi.org/simple/genomelake/), version: 0.1.3 2021-07-13T07:01:25,794 Found link https://files.pythonhosted.org/packages/07/f9/bfefaffe5478615f126704c385d0f38383d9dd912a65fb090eced83ba01e/genomelake-0.1.4.tar.gz#sha256=fcec11be1cce15f08de0df34916f946a9470ed911050f5ab7098a1279e892253 (from https://pypi.org/simple/genomelake/), version: 0.1.4 2021-07-13T07:01:25,794 Skipping link: not a file: https://pypi.org/simple/genomelake/ 2021-07-13T07:01:25,812 Given no hashes to check 1 links for project 'genomelake': discarding no candidates 2021-07-13T07:01:25,831 Collecting genomelake==0.1.4 2021-07-13T07:01:25,833 Created temporary directory: /tmp/pip-unpack-x_bz8x1s 2021-07-13T07:01:26,047 Downloading genomelake-0.1.4.tar.gz (88 kB) 2021-07-13T07:01:26,140 Added genomelake==0.1.4 from https://files.pythonhosted.org/packages/07/f9/bfefaffe5478615f126704c385d0f38383d9dd912a65fb090eced83ba01e/genomelake-0.1.4.tar.gz#sha256=fcec11be1cce15f08de0df34916f946a9470ed911050f5ab7098a1279e892253 to build tracker '/tmp/pip-req-tracker-0cj0pyyz' 2021-07-13T07:01:26,141 Running setup.py (path:/tmp/pip-wheel-83wq3xit/genomelake_2bd536adbc1749a7bc1613c527d560ff/setup.py) egg_info for package genomelake 2021-07-13T07:01:26,142 Created temporary directory: /tmp/pip-pip-egg-info-5rzyyk_y 2021-07-13T07:01:26,143 Running command python setup.py egg_info 2021-07-13T07:01:27,105 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T07:01:27,106 warnings.warn( 2021-07-13T07:01:27,218 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T07:01:27,219 warnings.warn( 2021-07-13T07:01:27,243 running egg_info 2021-07-13T07:01:27,245 creating /tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info 2021-07-13T07:01:27,246 writing /tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/PKG-INFO 2021-07-13T07:01:27,248 writing dependency_links to /tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/dependency_links.txt 2021-07-13T07:01:27,250 writing requirements to /tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/requires.txt 2021-07-13T07:01:27,251 writing top-level names to /tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/top_level.txt 2021-07-13T07:01:27,252 writing manifest file '/tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/SOURCES.txt' 2021-07-13T07:01:27,581 reading manifest file '/tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/SOURCES.txt' 2021-07-13T07:01:27,582 reading manifest template 'MANIFEST.in' 2021-07-13T07:01:27,584 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-13T07:01:27,584 warning: no previously-included files matching '*.py[co]' found under directory '*' 2021-07-13T07:01:27,585 adding license file 'LICENSE' 2021-07-13T07:01:27,586 writing manifest file '/tmp/pip-pip-egg-info-5rzyyk_y/genomelake.egg-info/SOURCES.txt' 2021-07-13T07:01:27,660 Source in /tmp/pip-wheel-83wq3xit/genomelake_2bd536adbc1749a7bc1613c527d560ff has version 0.1.4, which satisfies requirement genomelake==0.1.4 from https://files.pythonhosted.org/packages/07/f9/bfefaffe5478615f126704c385d0f38383d9dd912a65fb090eced83ba01e/genomelake-0.1.4.tar.gz#sha256=fcec11be1cce15f08de0df34916f946a9470ed911050f5ab7098a1279e892253 2021-07-13T07:01:27,661 Removed genomelake==0.1.4 from https://files.pythonhosted.org/packages/07/f9/bfefaffe5478615f126704c385d0f38383d9dd912a65fb090eced83ba01e/genomelake-0.1.4.tar.gz#sha256=fcec11be1cce15f08de0df34916f946a9470ed911050f5ab7098a1279e892253 from build tracker '/tmp/pip-req-tracker-0cj0pyyz' 2021-07-13T07:01:27,666 Created temporary directory: /tmp/pip-unpack-yt0zlon8 2021-07-13T07:01:27,667 Building wheels for collected packages: genomelake 2021-07-13T07:01:27,671 Created temporary directory: /tmp/pip-wheel-q1pdrzvw 2021-07-13T07:01:27,672 Building wheel for genomelake (setup.py): started 2021-07-13T07:01:27,672 Destination directory: /tmp/pip-wheel-q1pdrzvw 2021-07-13T07:01:27,672 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-83wq3xit/genomelake_2bd536adbc1749a7bc1613c527d560ff/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-83wq3xit/genomelake_2bd536adbc1749a7bc1613c527d560ff/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-q1pdrzvw 2021-07-13T07:01:28,606 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T07:01:28,606 warnings.warn( 2021-07-13T07:01:28,721 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T07:01:28,722 warnings.warn( 2021-07-13T07:01:28,766 running bdist_wheel 2021-07-13T07:01:28,921 running build 2021-07-13T07:01:28,921 running build_py 2021-07-13T07:01:29,060 creating build 2021-07-13T07:01:29,060 creating build/lib.linux-armv7l-3.9 2021-07-13T07:01:29,061 creating build/lib.linux-armv7l-3.9/genomelake 2021-07-13T07:01:29,062 copying genomelake/extractors.py -> build/lib.linux-armv7l-3.9/genomelake 2021-07-13T07:01:29,065 copying genomelake/__init__.py -> build/lib.linux-armv7l-3.9/genomelake 2021-07-13T07:01:29,067 copying genomelake/backend.py -> build/lib.linux-armv7l-3.9/genomelake 2021-07-13T07:01:29,069 running build_ext 2021-07-13T07:01:29,075 skipping 'genomelake/util.c' Cython extension (up-to-date) 2021-07-13T07:01:29,075 building 'genomelake.util' extension 2021-07-13T07:01:29,075 creating build/temp.linux-armv7l-3.9 2021-07-13T07:01:29,076 creating build/temp.linux-armv7l-3.9/genomelake 2021-07-13T07:01:29,077 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c genomelake/util.c -o build/temp.linux-armv7l-3.9/genomelake/util.o 2021-07-13T07:01:29,468 genomelake/util.c: In function ‘__pyx_pf_10genomelake_4util_2one_hot_encode_sequence’: 2021-07-13T07:01:29,469 genomelake/util.c:221:53: warning: left-hand operand of comma expression has no effect [-Wunused-value] 2021-07-13T07:01:29,469 221 | #define __Pyx_void_to_None(void_result) (void_result, Py_INCREF(Py_None), Py_None) 2021-07-13T07:01:29,469 | ^ 2021-07-13T07:01:29,469 genomelake/util.c:2180:15: note: in expansion of macro ‘__Pyx_void_to_None’ 2021-07-13T07:01:29,469 2180 | __pyx_t_1 = __Pyx_void_to_None(NULL); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-13T07:01:29,470 | ^~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,614 genomelake/util.c: In function ‘PyInit_util’: 2021-07-13T07:01:29,621 genomelake/util.c:14114:25: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T07:01:29,621 14114 | __pyx_type___pyx_array.tp_print = 0; 2021-07-13T07:01:29,621 | ^ 2021-07-13T07:01:29,628 genomelake/util.c:14117:31: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T07:01:29,628 14117 | __pyx_type___pyx_MemviewEnum.tp_print = 0; 2021-07-13T07:01:29,628 | ^ 2021-07-13T07:01:29,635 genomelake/util.c:14128:30: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T07:01:29,635 14128 | __pyx_type___pyx_memoryview.tp_print = 0; 2021-07-13T07:01:29,635 | ^ 2021-07-13T07:01:29,642 genomelake/util.c:14137:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T07:01:29,642 14137 | __pyx_type___pyx_memoryviewslice.tp_print = 0; 2021-07-13T07:01:29,642 | ^ 2021-07-13T07:01:29,651 genomelake/util.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T07:01:29,658 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,658 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,659 | ^ 2021-07-13T07:01:29,659 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,659 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,659 from genomelake/util.c:24: 2021-07-13T07:01:29,659 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,659 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,659 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,667 genomelake/util.c:14420:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,667 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,667 | ^ 2021-07-13T07:01:29,667 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,668 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,668 from genomelake/util.c:24: 2021-07-13T07:01:29,668 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T07:01:29,668 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T07:01:29,668 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,675 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,676 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,676 | ^ 2021-07-13T07:01:29,676 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,676 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,676 from genomelake/util.c:24: 2021-07-13T07:01:29,676 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,676 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,676 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,684 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,684 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,684 | ^ 2021-07-13T07:01:29,684 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,684 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,684 from genomelake/util.c:24: 2021-07-13T07:01:29,685 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,685 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,685 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,692 genomelake/util.c:14420:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,692 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,692 | ^ 2021-07-13T07:01:29,693 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,693 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,693 from genomelake/util.c:24: 2021-07-13T07:01:29,693 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T07:01:29,693 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T07:01:29,693 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,700 genomelake/util.c:14420:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,701 14420 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,701 | ^ 2021-07-13T07:01:29,701 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,701 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,701 from genomelake/util.c:24: 2021-07-13T07:01:29,701 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,701 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,701 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,711 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,711 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,711 | ^ 2021-07-13T07:01:29,711 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,711 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,711 from genomelake/util.c:24: 2021-07-13T07:01:29,711 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,712 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,712 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,719 genomelake/util.c:14436:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,719 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,719 | ^ 2021-07-13T07:01:29,719 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,720 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,720 from genomelake/util.c:24: 2021-07-13T07:01:29,720 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T07:01:29,720 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T07:01:29,720 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,727 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,728 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,728 | ^ 2021-07-13T07:01:29,728 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,728 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,728 from genomelake/util.c:24: 2021-07-13T07:01:29,728 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,728 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,728 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,736 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,736 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,736 | ^ 2021-07-13T07:01:29,736 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,736 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,736 from genomelake/util.c:24: 2021-07-13T07:01:29,737 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,737 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,737 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,744 genomelake/util.c:14436:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,744 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,744 | ^ 2021-07-13T07:01:29,745 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,745 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,745 from genomelake/util.c:24: 2021-07-13T07:01:29,745 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T07:01:29,745 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T07:01:29,745 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,752 genomelake/util.c:14436:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:29,753 14436 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T07:01:29,753 | ^ 2021-07-13T07:01:29,753 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:29,753 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:29,753 from genomelake/util.c:24: 2021-07-13T07:01:29,753 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T07:01:29,753 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T07:01:29,754 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:29,768 genomelake/util.c: In function ‘__Pyx_ExceptionSave’: 2021-07-13T07:01:29,780 genomelake/util.c:14537:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:29,781 14537 | *type = tstate->exc_type; 2021-07-13T07:01:29,781 | ^~~~~~~~ 2021-07-13T07:01:29,781 | curexc_type 2021-07-13T07:01:29,793 genomelake/util.c:14538:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:29,793 14538 | *value = tstate->exc_value; 2021-07-13T07:01:29,793 | ^~~~~~~~~ 2021-07-13T07:01:29,793 | curexc_value 2021-07-13T07:01:29,805 genomelake/util.c:14539:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:29,806 14539 | *tb = tstate->exc_traceback; 2021-07-13T07:01:29,806 | ^~~~~~~~~~~~~ 2021-07-13T07:01:29,806 | curexc_traceback 2021-07-13T07:01:29,806 genomelake/util.c: In function ‘__Pyx_ExceptionReset’: 2021-07-13T07:01:29,818 genomelake/util.c:14551:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:29,818 14551 | tmp_type = tstate->exc_type; 2021-07-13T07:01:29,818 | ^~~~~~~~ 2021-07-13T07:01:29,818 | curexc_type 2021-07-13T07:01:29,830 genomelake/util.c:14552:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:29,831 14552 | tmp_value = tstate->exc_value; 2021-07-13T07:01:29,831 | ^~~~~~~~~ 2021-07-13T07:01:29,831 | curexc_value 2021-07-13T07:01:29,843 genomelake/util.c:14553:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:29,843 14553 | tmp_tb = tstate->exc_traceback; 2021-07-13T07:01:29,843 | ^~~~~~~~~~~~~ 2021-07-13T07:01:29,843 | curexc_traceback 2021-07-13T07:01:29,855 genomelake/util.c:14554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:29,856 14554 | tstate->exc_type = type; 2021-07-13T07:01:29,856 | ^~~~~~~~ 2021-07-13T07:01:29,856 | curexc_type 2021-07-13T07:01:29,868 genomelake/util.c:14555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:29,868 14555 | tstate->exc_value = value; 2021-07-13T07:01:29,868 | ^~~~~~~~~ 2021-07-13T07:01:29,868 | curexc_value 2021-07-13T07:01:29,880 genomelake/util.c:14556:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:29,881 14556 | tstate->exc_traceback = tb; 2021-07-13T07:01:29,881 | ^~~~~~~~~~~~~ 2021-07-13T07:01:29,881 | curexc_traceback 2021-07-13T07:01:29,884 genomelake/util.c: In function ‘__Pyx_GetException’: 2021-07-13T07:01:29,896 genomelake/util.c:14599:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:29,897 14599 | tmp_type = tstate->exc_type; 2021-07-13T07:01:29,897 | ^~~~~~~~ 2021-07-13T07:01:29,897 | curexc_type 2021-07-13T07:01:29,909 genomelake/util.c:14600:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:29,909 14600 | tmp_value = tstate->exc_value; 2021-07-13T07:01:29,909 | ^~~~~~~~~ 2021-07-13T07:01:29,909 | curexc_value 2021-07-13T07:01:29,921 genomelake/util.c:14601:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:29,922 14601 | tmp_tb = tstate->exc_traceback; 2021-07-13T07:01:29,922 | ^~~~~~~~~~~~~ 2021-07-13T07:01:29,922 | curexc_traceback 2021-07-13T07:01:29,934 genomelake/util.c:14602:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:29,934 14602 | tstate->exc_type = local_type; 2021-07-13T07:01:29,934 | ^~~~~~~~ 2021-07-13T07:01:29,934 | curexc_type 2021-07-13T07:01:29,946 genomelake/util.c:14603:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:29,947 14603 | tstate->exc_value = local_value; 2021-07-13T07:01:29,947 | ^~~~~~~~~ 2021-07-13T07:01:29,947 | curexc_value 2021-07-13T07:01:29,959 genomelake/util.c:14604:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:29,959 14604 | tstate->exc_traceback = local_tb; 2021-07-13T07:01:29,959 | ^~~~~~~~~~~~~ 2021-07-13T07:01:29,959 | curexc_traceback 2021-07-13T07:01:30,113 genomelake/util.c: In function ‘__Pyx_decode_c_string’: 2021-07-13T07:01:30,120 genomelake/util.c:15737:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T07:01:30,120 15737 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-13T07:01:30,121 | ^~~~~~ 2021-07-13T07:01:30,121 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T07:01:30,121 from /usr/include/python3.9/Python.h:97, 2021-07-13T07:01:30,121 from genomelake/util.c:24: 2021-07-13T07:01:30,121 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-13T07:01:30,121 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-13T07:01:30,121 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-13T07:01:30,128 genomelake/util.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-13T07:01:30,141 genomelake/util.c:15777:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:30,142 15777 | tmp_type = tstate->exc_type; 2021-07-13T07:01:30,142 | ^~~~~~~~ 2021-07-13T07:01:30,142 | curexc_type 2021-07-13T07:01:30,155 genomelake/util.c:15778:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:30,155 15778 | tmp_value = tstate->exc_value; 2021-07-13T07:01:30,155 | ^~~~~~~~~ 2021-07-13T07:01:30,155 | curexc_value 2021-07-13T07:01:30,169 genomelake/util.c:15779:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:30,169 15779 | tmp_tb = tstate->exc_traceback; 2021-07-13T07:01:30,169 | ^~~~~~~~~~~~~ 2021-07-13T07:01:30,169 | curexc_traceback 2021-07-13T07:01:30,182 genomelake/util.c:15780:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-13T07:01:30,182 15780 | tstate->exc_type = *type; 2021-07-13T07:01:30,183 | ^~~~~~~~ 2021-07-13T07:01:30,183 | curexc_type 2021-07-13T07:01:30,196 genomelake/util.c:15781:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-13T07:01:30,196 15781 | tstate->exc_value = *value; 2021-07-13T07:01:30,196 | ^~~~~~~~~ 2021-07-13T07:01:30,196 | curexc_value 2021-07-13T07:01:30,209 genomelake/util.c:15782:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-13T07:01:30,210 15782 | tstate->exc_traceback = *tb; 2021-07-13T07:01:30,210 | ^~~~~~~~~~~~~ 2021-07-13T07:01:30,210 | curexc_traceback 2021-07-13T07:01:30,460 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T07:01:30,543 Building wheel for genomelake (setup.py): finished with status 'error' 2021-07-13T07:01:30,544 ERROR: Failed building wheel for genomelake 2021-07-13T07:01:30,545 Running setup.py clean for genomelake 2021-07-13T07:01:30,545 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-83wq3xit/genomelake_2bd536adbc1749a7bc1613c527d560ff/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-83wq3xit/genomelake_2bd536adbc1749a7bc1613c527d560ff/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T07:01:31,460 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T07:01:31,460 warnings.warn( 2021-07-13T07:01:31,576 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T07:01:31,576 warnings.warn( 2021-07-13T07:01:31,590 running clean 2021-07-13T07:01:31,593 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T07:01:31,595 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T07:01:31,597 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T07:01:31,597 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T07:01:31,598 removing 'build' 2021-07-13T07:01:31,653 Failed to build genomelake 2021-07-13T07:01:31,654 ERROR: Failed to build one or more wheels 2021-07-13T07:01:31,655 Exception information: 2021-07-13T07:01:31,655 Traceback (most recent call last): 2021-07-13T07:01:31,655 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T07:01:31,655 status = self.run(options, args) 2021-07-13T07:01:31,655 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T07:01:31,655 return func(self, options, args) 2021-07-13T07:01:31,655 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T07:01:31,655 raise CommandError( 2021-07-13T07:01:31,655 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T07:01:31,657 Removed build tracker: '/tmp/pip-req-tracker-0cj0pyyz'