2021-07-13T07:13:45,679 Created temporary directory: /tmp/pip-ephem-wheel-cache-9a2rly2c
2021-07-13T07:13:45,682 Created temporary directory: /tmp/pip-req-tracker-7wpt8kov
2021-07-13T07:13:45,682 Initialized build tracking at /tmp/pip-req-tracker-7wpt8kov
2021-07-13T07:13:45,682 Created build tracker: /tmp/pip-req-tracker-7wpt8kov
2021-07-13T07:13:45,683 Entered build tracker: /tmp/pip-req-tracker-7wpt8kov
2021-07-13T07:13:45,683 Created temporary directory: /tmp/pip-wheel-m9al5m21
2021-07-13T07:13:45,714 1 location(s) to search for versions of ampal:
2021-07-13T07:13:45,714 * https://pypi.org/simple/ampal/
2021-07-13T07:13:45,714 Fetching project page and analyzing links: https://pypi.org/simple/ampal/
2021-07-13T07:13:45,715 Getting page https://pypi.org/simple/ampal/
2021-07-13T07:13:45,716 Found index url https://pypi.org/simple
2021-07-13T07:13:45,897   Found link https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d (from https://pypi.org/simple/ampal/), version: 1.0.0
2021-07-13T07:13:45,898   Found link https://files.pythonhosted.org/packages/c2/90/2aecb8bdeab8de4f896f38fc792b434292f0f96a86cd3b860c849f4cfd55/AMPAL-1.0.1.tar.gz#sha256=58e351534d49ef3a7b5267dd32462c20852a63213a36acfbf670e447009cac21 (from https://pypi.org/simple/ampal/), version: 1.0.1
2021-07-13T07:13:45,898   Found link https://files.pythonhosted.org/packages/29/39/ac32680ba515731a81942c3a1bb8d0731fc0da02185885794ccf51dd604b/AMPAL-1.1.0.tar.gz#sha256=ab6beac3f730bc12a65d821a8b3d7ca68643e29179f08fef0607d45078bf1022 (from https://pypi.org/simple/ampal/), version: 1.1.0
2021-07-13T07:13:45,898   Found link https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7 (from https://pypi.org/simple/ampal/), version: 1.2.0
2021-07-13T07:13:45,899   Found link https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276 (from https://pypi.org/simple/ampal/), version: 1.3.0
2021-07-13T07:13:45,899   Found link https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc (from https://pypi.org/simple/ampal/), version: 1.4.0
2021-07-13T07:13:45,899 Skipping link: not a file: https://pypi.org/simple/ampal/
2021-07-13T07:13:45,917 Given no hashes to check 1 links for project 'ampal': discarding no candidates
2021-07-13T07:13:45,936 Collecting ampal==1.0.0
2021-07-13T07:13:45,938   Created temporary directory: /tmp/pip-unpack-82cdthh9
2021-07-13T07:13:46,919   Downloading AMPAL-1.0.0.tar.gz (1.2 MB)
2021-07-13T07:13:47,357   Added ampal==1.0.0 from https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d to build tracker '/tmp/pip-req-tracker-7wpt8kov'
2021-07-13T07:13:47,358     Running setup.py (path:/tmp/pip-wheel-m9al5m21/ampal_3defd97a7dc443aa9c34ccc6d970afc3/setup.py) egg_info for package ampal
2021-07-13T07:13:47,359     Created temporary directory: /tmp/pip-pip-egg-info-kf590tj7
2021-07-13T07:13:47,359     Running command python setup.py egg_info
2021-07-13T07:13:49,121     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-m9al5m21/ampal_3defd97a7dc443aa9c34ccc6d970afc3/src/ampal/geometry.pyx
2021-07-13T07:13:49,121       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T07:13:52,552     Compiling src/ampal/geometry.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-13T07:13:52,553     [1/1] Cythonizing src/ampal/geometry.pyx
2021-07-13T07:13:52,738     running egg_info
2021-07-13T07:13:52,740     creating /tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info
2021-07-13T07:13:52,742     writing /tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/PKG-INFO
2021-07-13T07:13:52,745     writing dependency_links to /tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/dependency_links.txt
2021-07-13T07:13:52,747     writing requirements to /tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/requires.txt
2021-07-13T07:13:52,748     writing top-level names to /tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/top_level.txt
2021-07-13T07:13:52,749     writing manifest file '/tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/SOURCES.txt'
2021-07-13T07:13:52,937     reading manifest file '/tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/SOURCES.txt'
2021-07-13T07:13:52,939     reading manifest template 'MANIFEST.in'
2021-07-13T07:13:52,941     warning: no files found matching 'LICENSE.txt'
2021-07-13T07:13:52,975     writing manifest file '/tmp/pip-pip-egg-info-kf590tj7/AMPAL.egg-info/SOURCES.txt'
2021-07-13T07:13:53,180   Source in /tmp/pip-wheel-m9al5m21/ampal_3defd97a7dc443aa9c34ccc6d970afc3 has version 1.0.0, which satisfies requirement ampal==1.0.0 from https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d
2021-07-13T07:13:53,181   Removed ampal==1.0.0 from https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d from build tracker '/tmp/pip-req-tracker-7wpt8kov'
2021-07-13T07:13:53,185 Created temporary directory: /tmp/pip-unpack-v4e7oh9v
2021-07-13T07:13:53,186 Building wheels for collected packages: ampal
2021-07-13T07:13:53,191   Created temporary directory: /tmp/pip-wheel-3hofkspn
2021-07-13T07:13:53,192   Building wheel for ampal (setup.py): started
2021-07-13T07:13:53,192   Destination directory: /tmp/pip-wheel-3hofkspn
2021-07-13T07:13:53,192   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-m9al5m21/ampal_3defd97a7dc443aa9c34ccc6d970afc3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-m9al5m21/ampal_3defd97a7dc443aa9c34ccc6d970afc3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3hofkspn
2021-07-13T07:13:55,054   running bdist_wheel
2021-07-13T07:13:55,060   running build
2021-07-13T07:13:55,060   running build_py
2021-07-13T07:13:55,204   creating build
2021-07-13T07:13:55,204   creating build/lib.linux-armv7l-3.9
2021-07-13T07:13:55,205   creating build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,206   copying src/ampal/analyse_protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,209   copying src/ampal/assembly.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,212   copying src/ampal/pseudo_atoms.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,214   copying src/ampal/interactions.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,216   copying src/ampal/nucleic_acid.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,219   copying src/ampal/data.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,221   copying src/ampal/pdb_parser.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,223   copying src/ampal/non_canonical.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,225   copying src/ampal/ligands.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,227   copying src/ampal/amino_acids.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,230   copying src/ampal/ampal_warnings.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,232   copying src/ampal/base_ampal.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,236   copying src/ampal/protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,239   copying src/ampal/__init__.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,241   running egg_info
2021-07-13T07:13:55,281   writing src/AMPAL.egg-info/PKG-INFO
2021-07-13T07:13:55,283   writing dependency_links to src/AMPAL.egg-info/dependency_links.txt
2021-07-13T07:13:55,285   writing requirements to src/AMPAL.egg-info/requires.txt
2021-07-13T07:13:55,286   writing top-level names to src/AMPAL.egg-info/top_level.txt
2021-07-13T07:13:55,322   reading manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T07:13:55,326   reading manifest template 'MANIFEST.in'
2021-07-13T07:13:55,328   warning: no files found matching 'LICENSE.txt'
2021-07-13T07:13:55,361   writing manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T07:13:55,367   copying src/ampal/geometry.c -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,410   copying src/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,473   copying src/ampal/geometry.pyx -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T07:13:55,476   creating build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,477   copying src/ampal/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,479   copying src/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,481   copying src/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,483   copying src/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,486   copying src/ampal/__pycache__/assembly.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,489   copying src/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,493   copying src/ampal/__pycache__/data.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,495   copying src/ampal/__pycache__/interactions.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,498   copying src/ampal/__pycache__/ligands.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,501   copying src/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,504   copying src/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,507   copying src/ampal/__pycache__/protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,510   copying src/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T07:13:55,514   creating build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T07:13:55,514   copying src/ampal/datafiles/amino_acids.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T07:13:55,519   copying src/ampal/datafiles/chemical_elements.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T07:13:55,523   copying src/ampal/datafiles/pdb_atom_column_format.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T07:13:55,528   creating build/lib.linux-armv7l-3.9/ampal/datafiles/reference_ampals
2021-07-13T07:13:55,529   copying src/ampal/datafiles/reference_ampals/README.md -> build/lib.linux-armv7l-3.9/ampal/datafiles/reference_ampals
2021-07-13T07:13:55,531   creating build/lib.linux-armv7l-3.9/ampal/datafiles/reference_ampals/non_canonical_amino_acids
2021-07-13T07:13:55,532   copying src/ampal/datafiles/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/lib.linux-armv7l-3.9/ampal/datafiles/reference_ampals/non_canonical_amino_acids
2021-07-13T07:13:55,537   running build_ext
2021-07-13T07:13:55,543   building 'ampal.geometry' extension
2021-07-13T07:13:55,543   creating build/temp.linux-armv7l-3.9
2021-07-13T07:13:55,544   creating build/temp.linux-armv7l-3.9/src
2021-07-13T07:13:55,545   creating build/temp.linux-armv7l-3.9/src/ampal
2021-07-13T07:13:55,545   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/ampal/geometry.c -o build/temp.linux-armv7l-3.9/src/ampal/geometry.o
2021-07-13T07:13:59,084   src/ampal/geometry.c:3694:18: warning: ‘__pyx_f_5ampal_8geometry__unit_vector’ defined but not used [-Wunused-function]
2021-07-13T07:13:59,084    3694 | static PyObject *__pyx_f_5ampal_8geometry__unit_vector(double *__pyx_v_a) {
2021-07-13T07:13:59,085         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T07:13:59,086   src/ampal/geometry.c:2911:15: warning: ‘__pyx_f_5ampal_8geometry__dot_product_2d’ defined but not used [-Wunused-function]
2021-07-13T07:13:59,086    2911 | static double __pyx_f_5ampal_8geometry__dot_product_2d(double *__pyx_v_a, double *__pyx_v_b) {
2021-07-13T07:13:59,087         |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T07:14:40,373   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/ampal/geometry.o -o build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so
2021-07-13T07:14:40,629   installing to build/bdist.linux-armv7l/wheel
2021-07-13T07:14:40,629   running install
2021-07-13T07:14:40,630   running install_lib
2021-07-13T07:14:40,635   creating build/bdist.linux-armv7l
2021-07-13T07:14:40,635   creating build/bdist.linux-armv7l/wheel
2021-07-13T07:14:40,637   creating build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,638   copying build/lib.linux-armv7l-3.9/ampal/analyse_protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,642   creating build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T07:14:40,642   copying build/lib.linux-armv7l-3.9/ampal/datafiles/chemical_elements.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T07:14:40,646   copying build/lib.linux-armv7l-3.9/ampal/datafiles/amino_acids.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T07:14:40,651   copying build/lib.linux-armv7l-3.9/ampal/datafiles/pdb_atom_column_format.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T07:14:40,657   creating build/bdist.linux-armv7l/wheel/ampal/datafiles/reference_ampals
2021-07-13T07:14:40,658   copying build/lib.linux-armv7l-3.9/ampal/datafiles/reference_ampals/README.md -> build/bdist.linux-armv7l/wheel/ampal/datafiles/reference_ampals
2021-07-13T07:14:40,661   creating build/bdist.linux-armv7l/wheel/ampal/datafiles/reference_ampals/non_canonical_amino_acids
2021-07-13T07:14:40,661   copying build/lib.linux-armv7l-3.9/ampal/datafiles/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/bdist.linux-armv7l/wheel/ampal/datafiles/reference_ampals/non_canonical_amino_acids
2021-07-13T07:14:40,663   copying build/lib.linux-armv7l-3.9/ampal/assembly.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,666   copying build/lib.linux-armv7l-3.9/ampal/pseudo_atoms.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,669   copying build/lib.linux-armv7l-3.9/ampal/interactions.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,671   copying build/lib.linux-armv7l-3.9/ampal/nucleic_acid.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,674   copying build/lib.linux-armv7l-3.9/ampal/data.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,676   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,741   copying build/lib.linux-armv7l-3.9/ampal/pdb_parser.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,743   copying build/lib.linux-armv7l-3.9/ampal/non_canonical.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,745   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,814   creating build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,814   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/assembly.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,817   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,819   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,822   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,825   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,828   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,830   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,833   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ligands.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,835   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,838   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,840   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,841   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/interactions.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,844   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T07:14:40,847   copying build/lib.linux-armv7l-3.9/ampal/ligands.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,849   copying build/lib.linux-armv7l-3.9/ampal/geometry.c -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,887   copying build/lib.linux-armv7l-3.9/ampal/amino_acids.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,889   copying build/lib.linux-armv7l-3.9/ampal/ampal_warnings.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,891   copying build/lib.linux-armv7l-3.9/ampal/base_ampal.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,893   copying build/lib.linux-armv7l-3.9/ampal/protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,896   copying build/lib.linux-armv7l-3.9/ampal/geometry.pyx -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,900   copying build/lib.linux-armv7l-3.9/ampal/__init__.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T07:14:40,901   running install_egg_info
2021-07-13T07:14:40,907   Copying src/AMPAL.egg-info to build/bdist.linux-armv7l/wheel/AMPAL-1.0.0-py3.9.egg-info
2021-07-13T07:14:40,922   running install_scripts
2021-07-13T07:14:40,968   creating build/bdist.linux-armv7l/wheel/AMPAL-1.0.0.dist-info/WHEEL
2021-07-13T07:14:40,971   creating '/tmp/pip-wheel-3hofkspn/AMPAL-1.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T07:14:40,974   adding 'ampal/__init__.py'
2021-07-13T07:14:40,977   adding 'ampal/amino_acids.py'
2021-07-13T07:14:40,979   adding 'ampal/ampal_warnings.py'
2021-07-13T07:14:40,982   adding 'ampal/analyse_protein.py'
2021-07-13T07:14:40,985   adding 'ampal/assembly.py'
2021-07-13T07:14:40,989   adding 'ampal/base_ampal.py'
2021-07-13T07:14:40,990   adding 'ampal/data.py'
2021-07-13T07:14:41,105   adding 'ampal/geometry.c'
2021-07-13T07:14:41,525   adding 'ampal/geometry.cpython-36m-x86_64-linux-gnu.so'
2021-07-13T07:14:42,034   adding 'ampal/geometry.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T07:14:42,063   adding 'ampal/geometry.pyx'
2021-07-13T07:14:42,065   adding 'ampal/interactions.py'
2021-07-13T07:14:42,067   adding 'ampal/ligands.py'
2021-07-13T07:14:42,068   adding 'ampal/non_canonical.py'
2021-07-13T07:14:42,069   adding 'ampal/nucleic_acid.py'
2021-07-13T07:14:42,072   adding 'ampal/pdb_parser.py'
2021-07-13T07:14:42,076   adding 'ampal/protein.py'
2021-07-13T07:14:42,078   adding 'ampal/pseudo_atoms.py'
2021-07-13T07:14:42,080   adding 'ampal/__pycache__/__init__.cpython-36.pyc'
2021-07-13T07:14:42,082   adding 'ampal/__pycache__/amino_acids.cpython-36.pyc'
2021-07-13T07:14:42,084   adding 'ampal/__pycache__/ampal_warnings.cpython-36.pyc'
2021-07-13T07:14:42,088   adding 'ampal/__pycache__/analyse_protein.cpython-36.pyc'
2021-07-13T07:14:42,092   adding 'ampal/__pycache__/assembly.cpython-36.pyc'
2021-07-13T07:14:42,097   adding 'ampal/__pycache__/base_ampal.cpython-36.pyc'
2021-07-13T07:14:42,099   adding 'ampal/__pycache__/data.cpython-36.pyc'
2021-07-13T07:14:42,102   adding 'ampal/__pycache__/interactions.cpython-36.pyc'
2021-07-13T07:14:42,103   adding 'ampal/__pycache__/ligands.cpython-36.pyc'
2021-07-13T07:14:42,105   adding 'ampal/__pycache__/nucleic_acid.cpython-36.pyc'
2021-07-13T07:14:42,108   adding 'ampal/__pycache__/pdb_parser.cpython-36.pyc'
2021-07-13T07:14:42,112   adding 'ampal/__pycache__/protein.cpython-36.pyc'
2021-07-13T07:14:42,115   adding 'ampal/__pycache__/pseudo_atoms.cpython-36.pyc'
2021-07-13T07:14:42,123   adding 'ampal/datafiles/amino_acids.json'
2021-07-13T07:14:42,128   adding 'ampal/datafiles/chemical_elements.json'
2021-07-13T07:14:42,149   adding 'ampal/datafiles/pdb_atom_column_format.json'
2021-07-13T07:14:42,151   adding 'ampal/datafiles/reference_ampals/README.md'
2021-07-13T07:14:42,153   adding 'ampal/datafiles/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle'
2021-07-13T07:14:42,154   adding 'AMPAL-1.0.0.dist-info/METADATA'
2021-07-13T07:14:42,155   adding 'AMPAL-1.0.0.dist-info/WHEEL'
2021-07-13T07:14:42,156   adding 'AMPAL-1.0.0.dist-info/top_level.txt'
2021-07-13T07:14:42,157   adding 'AMPAL-1.0.0.dist-info/RECORD'
2021-07-13T07:14:42,190   removing build/bdist.linux-armv7l/wheel
2021-07-13T07:14:42,319   Building wheel for ampal (setup.py): finished with status 'done'
2021-07-13T07:14:42,351   Created wheel for ampal: filename=AMPAL-1.0.0-cp39-cp39-linux_armv7l.whl size=2104791 sha256=36203627d34049fa4bd5f68c5ea5982471d2696e71f6ebf3c2f40be512a0ca8f
2021-07-13T07:14:42,351   Stored in directory: /tmp/pip-ephem-wheel-cache-9a2rly2c/wheels/7d/20/1b/e14c450b7b9ed966150cd5d31babfe74afba022e3c3a4c1a49
2021-07-13T07:14:42,362 Successfully built ampal
2021-07-13T07:14:42,437 Removed build tracker: '/tmp/pip-req-tracker-7wpt8kov'