2021-07-13T07:18:30,919 Created temporary directory: /tmp/pip-ephem-wheel-cache-21hpltip
2021-07-13T07:18:30,922 Created temporary directory: /tmp/pip-req-tracker-d6kugt56
2021-07-13T07:18:30,922 Initialized build tracking at /tmp/pip-req-tracker-d6kugt56
2021-07-13T07:18:30,922 Created build tracker: /tmp/pip-req-tracker-d6kugt56
2021-07-13T07:18:30,923 Entered build tracker: /tmp/pip-req-tracker-d6kugt56
2021-07-13T07:18:30,923 Created temporary directory: /tmp/pip-wheel-1_3dific
2021-07-13T07:18:30,953 1 location(s) to search for versions of budeff:
2021-07-13T07:18:30,953 * https://pypi.org/simple/budeff/
2021-07-13T07:18:30,953 Fetching project page and analyzing links: https://pypi.org/simple/budeff/
2021-07-13T07:18:30,954 Getting page https://pypi.org/simple/budeff/
2021-07-13T07:18:30,955 Found index url https://pypi.org/simple
2021-07-13T07:18:31,135   Found link https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz#sha256=390a9781b9a1e26d15d9e40a6a834b87de8142ce604c23fc2ef57000f83db16b (from https://pypi.org/simple/budeff/), version: 1.0.0
2021-07-13T07:18:31,135 Skipping link: not a file: https://pypi.org/simple/budeff/
2021-07-13T07:18:31,153 Given no hashes to check 1 links for project 'budeff': discarding no candidates
2021-07-13T07:18:31,172 Collecting budeff==1.0.0
2021-07-13T07:18:31,173   Created temporary directory: /tmp/pip-unpack-2nfz_2f2
2021-07-13T07:18:31,213   Downloading BUDEFF-1.0.0.tar.gz (85 kB)
2021-07-13T07:18:31,298   Added budeff==1.0.0 from https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz#sha256=390a9781b9a1e26d15d9e40a6a834b87de8142ce604c23fc2ef57000f83db16b to build tracker '/tmp/pip-req-tracker-d6kugt56'
2021-07-13T07:18:31,299     Running setup.py (path:/tmp/pip-wheel-1_3dific/budeff_0a7a9d11566e47ac8dbf595d053e3020/setup.py) egg_info for package budeff
2021-07-13T07:18:31,299     Created temporary directory: /tmp/pip-pip-egg-info-u3t2q5r4
2021-07-13T07:18:31,300     Running command python setup.py egg_info
2021-07-13T07:18:32,401     /usr/lib/python3.9/distutils/extension.py:131: UserWarning: Unknown Extension options: 'include_dir'
2021-07-13T07:18:32,402       warnings.warn(msg)
2021-07-13T07:18:33,093     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1_3dific/budeff_0a7a9d11566e47ac8dbf595d053e3020/src/budeff/calculate_energy.pyx
2021-07-13T07:18:33,094       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T07:18:34,131     Compiling src/budeff/calculate_energy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-13T07:18:34,131     [1/1] Cythonizing src/budeff/calculate_energy.pyx
2021-07-13T07:18:34,287     running egg_info
2021-07-13T07:18:34,289     creating /tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info
2021-07-13T07:18:34,290     writing /tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/PKG-INFO
2021-07-13T07:18:34,294     writing dependency_links to /tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/dependency_links.txt
2021-07-13T07:18:34,296     writing requirements to /tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/requires.txt
2021-07-13T07:18:34,297     writing top-level names to /tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/top_level.txt
2021-07-13T07:18:34,298     writing manifest file '/tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/SOURCES.txt'
2021-07-13T07:18:34,449     reading manifest file '/tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/SOURCES.txt'
2021-07-13T07:18:34,450     reading manifest template 'MANIFEST.in'
2021-07-13T07:18:34,460     adding license file 'LICENSE'
2021-07-13T07:18:34,462     writing manifest file '/tmp/pip-pip-egg-info-u3t2q5r4/BUDEFF.egg-info/SOURCES.txt'
2021-07-13T07:18:34,609   Source in /tmp/pip-wheel-1_3dific/budeff_0a7a9d11566e47ac8dbf595d053e3020 has version 1.0.0, which satisfies requirement budeff==1.0.0 from https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz#sha256=390a9781b9a1e26d15d9e40a6a834b87de8142ce604c23fc2ef57000f83db16b
2021-07-13T07:18:34,610   Removed budeff==1.0.0 from https://files.pythonhosted.org/packages/33/89/a7ea41131ab0db5c4232902ede026d5c21e05966b3abe59b84600fbb947d/BUDEFF-1.0.0.tar.gz#sha256=390a9781b9a1e26d15d9e40a6a834b87de8142ce604c23fc2ef57000f83db16b from build tracker '/tmp/pip-req-tracker-d6kugt56'
2021-07-13T07:18:34,618 Created temporary directory: /tmp/pip-unpack-9i7o557r
2021-07-13T07:18:34,619 Building wheels for collected packages: budeff
2021-07-13T07:18:34,623   Created temporary directory: /tmp/pip-wheel-d7zqr07_
2021-07-13T07:18:34,624   Building wheel for budeff (setup.py): started
2021-07-13T07:18:34,624   Destination directory: /tmp/pip-wheel-d7zqr07_
2021-07-13T07:18:34,624   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1_3dific/budeff_0a7a9d11566e47ac8dbf595d053e3020/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1_3dific/budeff_0a7a9d11566e47ac8dbf595d053e3020/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d7zqr07_
2021-07-13T07:18:35,724   /usr/lib/python3.9/distutils/extension.py:131: UserWarning: Unknown Extension options: 'include_dir'
2021-07-13T07:18:35,725     warnings.warn(msg)
2021-07-13T07:18:36,366   running bdist_wheel
2021-07-13T07:18:36,371   running build
2021-07-13T07:18:36,372   running build_py
2021-07-13T07:18:36,510   creating build
2021-07-13T07:18:36,511   creating build/lib.linux-armv7l-3.9
2021-07-13T07:18:36,512   creating build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,513   copying src/budeff/__init__.py -> build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,516   copying src/budeff/force_field.py -> build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,518   running egg_info
2021-07-13T07:18:36,533   writing src/BUDEFF.egg-info/PKG-INFO
2021-07-13T07:18:36,536   writing dependency_links to src/BUDEFF.egg-info/dependency_links.txt
2021-07-13T07:18:36,539   writing requirements to src/BUDEFF.egg-info/requires.txt
2021-07-13T07:18:36,540   writing top-level names to src/BUDEFF.egg-info/top_level.txt
2021-07-13T07:18:36,546   reading manifest file 'src/BUDEFF.egg-info/SOURCES.txt'
2021-07-13T07:18:36,549   reading manifest template 'MANIFEST.in'
2021-07-13T07:18:36,558   adding license file 'LICENSE'
2021-07-13T07:18:36,561   writing manifest file 'src/BUDEFF.egg-info/SOURCES.txt'
2021-07-13T07:18:36,564   copying src/budeff/calculateEnergies.cpp -> build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,567   copying src/budeff/calculate_energy.cpp -> build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,591   copying src/budeff/calculate_energy.pyx -> build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,593   copying src/budeff/dataClasses.hpp -> build/lib.linux-armv7l-3.9/budeff
2021-07-13T07:18:36,595   creating build/lib.linux-armv7l-3.9/budeff/force_fields
2021-07-13T07:18:36,596   copying src/budeff/force_fields/bude_2015v1.json -> build/lib.linux-armv7l-3.9/budeff/force_fields
2021-07-13T07:18:36,599   copying src/budeff/force_fields/bude_2016v1.json -> build/lib.linux-armv7l-3.9/budeff/force_fields
2021-07-13T07:18:36,602   running build_ext
2021-07-13T07:18:36,606   building 'budeff.calculate_energy' extension
2021-07-13T07:18:36,607   creating build/temp.linux-armv7l-3.9
2021-07-13T07:18:36,607   creating build/temp.linux-armv7l-3.9/src
2021-07-13T07:18:36,608   creating build/temp.linux-armv7l-3.9/src/budeff
2021-07-13T07:18:36,608   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/budeff -I/usr/include/python3.9 -c src/budeff/calculate_energy.cpp -o build/temp.linux-armv7l-3.9/src/budeff/calculate_energy.o
2021-07-13T07:18:47,458   In file included from /usr/include/c++/10/vector:72,
2021-07-13T07:18:47,458                    from src/budeff/calculate_energy.cpp:650:
2021-07-13T07:18:47,458   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2021-07-13T07:18:47,459   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2021-07-13T07:18:47,459     426 |       vector<_Tp, _Alloc>::
2021-07-13T07:18:47,459         |       ^~~~~~~~~~~~~~~~~~~
2021-07-13T07:18:47,523   In file included from /usr/include/c++/10/vector:67,
2021-07-13T07:18:47,524                    from src/budeff/calculate_energy.cpp:650:
2021-07-13T07:18:47,524   /usr/include/c++/10/bits/stl_vector.h: In function ‘std::vector<double> bude::calculatePairEnergy(const bude::AtomDataFF*, const bude::AtomDataFF*, double)’:
2021-07-13T07:18:47,524   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T07:18:47,524    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T07:18:47,524         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T07:18:47,525   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T07:18:47,525    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T07:18:47,525         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T07:18:47,525   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2021-07-13T07:18:47,525    1198 |    _M_realloc_insert(end(), __x);
2021-07-13T07:18:47,525         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-13T07:18:50,391   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/budeff/calculate_energy.o -o build/lib.linux-armv7l-3.9/budeff/calculate_energy.cpython-39-arm-linux-gnueabihf.so
2021-07-13T07:18:50,717   installing to build/bdist.linux-armv7l/wheel
2021-07-13T07:18:50,717   running install
2021-07-13T07:18:50,719   running install_lib
2021-07-13T07:18:50,723   creating build/bdist.linux-armv7l
2021-07-13T07:18:50,724   creating build/bdist.linux-armv7l/wheel
2021-07-13T07:18:50,726   creating build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,727   copying build/lib.linux-armv7l-3.9/budeff/calculate_energy.pyx -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,730   copying build/lib.linux-armv7l-3.9/budeff/calculate_energy.cpp -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,750   copying build/lib.linux-armv7l-3.9/budeff/__init__.py -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,753   creating build/bdist.linux-armv7l/wheel/budeff/force_fields
2021-07-13T07:18:50,754   copying build/lib.linux-armv7l-3.9/budeff/force_fields/bude_2016v1.json -> build/bdist.linux-armv7l/wheel/budeff/force_fields
2021-07-13T07:18:50,757   copying build/lib.linux-armv7l-3.9/budeff/force_fields/bude_2015v1.json -> build/bdist.linux-armv7l/wheel/budeff/force_fields
2021-07-13T07:18:50,759   copying build/lib.linux-armv7l-3.9/budeff/force_field.py -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,762   copying build/lib.linux-armv7l-3.9/budeff/dataClasses.hpp -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,763   copying build/lib.linux-armv7l-3.9/budeff/calculateEnergies.cpp -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,766   copying build/lib.linux-armv7l-3.9/budeff/calculate_energy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/budeff
2021-07-13T07:18:50,791   running install_egg_info
2021-07-13T07:18:50,800   Copying src/BUDEFF.egg-info to build/bdist.linux-armv7l/wheel/BUDEFF-1.0.0-py3.9.egg-info
2021-07-13T07:18:50,813   running install_scripts
2021-07-13T07:18:50,854   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-13T07:18:50,858   creating build/bdist.linux-armv7l/wheel/BUDEFF-1.0.0.dist-info/WHEEL
2021-07-13T07:18:50,861   creating '/tmp/pip-wheel-d7zqr07_/BUDEFF-1.0.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T07:18:50,864   adding 'budeff/__init__.py'
2021-07-13T07:18:50,866   adding 'budeff/calculateEnergies.cpp'
2021-07-13T07:18:50,917   adding 'budeff/calculate_energy.cpp'
2021-07-13T07:18:51,114   adding 'budeff/calculate_energy.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T07:18:51,123   adding 'budeff/calculate_energy.pyx'
2021-07-13T07:18:51,124   adding 'budeff/dataClasses.hpp'
2021-07-13T07:18:51,126   adding 'budeff/force_field.py'
2021-07-13T07:18:51,128   adding 'budeff/force_fields/bude_2015v1.json'
2021-07-13T07:18:51,130   adding 'budeff/force_fields/bude_2016v1.json'
2021-07-13T07:18:51,131   adding 'BUDEFF-1.0.0.dist-info/LICENSE'
2021-07-13T07:18:51,132   adding 'BUDEFF-1.0.0.dist-info/METADATA'
2021-07-13T07:18:51,133   adding 'BUDEFF-1.0.0.dist-info/WHEEL'
2021-07-13T07:18:51,134   adding 'BUDEFF-1.0.0.dist-info/top_level.txt'
2021-07-13T07:18:51,135   adding 'BUDEFF-1.0.0.dist-info/RECORD'
2021-07-13T07:18:51,143   removing build/bdist.linux-armv7l/wheel
2021-07-13T07:18:51,263   Building wheel for budeff (setup.py): finished with status 'done'
2021-07-13T07:18:51,271   Created wheel for budeff: filename=BUDEFF-1.0.0-cp39-cp39-linux_armv7l.whl size=431796 sha256=713164ea5d2d9fb8c125f04cfcb6c8b1d9aa37d224bfb008eb39044350117e76
2021-07-13T07:18:51,272   Stored in directory: /tmp/pip-ephem-wheel-cache-21hpltip/wheels/76/64/f2/3754615397bbf10ab957768c27b828bc89dbde96b19ba859c5
2021-07-13T07:18:51,281 Successfully built budeff
2021-07-13T07:18:51,298 Removed build tracker: '/tmp/pip-req-tracker-d6kugt56'