2021-07-13T09:01:41,627 Created temporary directory: /tmp/pip-ephem-wheel-cache-doqrszk5 2021-07-13T09:01:41,630 Created temporary directory: /tmp/pip-req-tracker-rkweg0zg 2021-07-13T09:01:41,630 Initialized build tracking at /tmp/pip-req-tracker-rkweg0zg 2021-07-13T09:01:41,630 Created build tracker: /tmp/pip-req-tracker-rkweg0zg 2021-07-13T09:01:41,630 Entered build tracker: /tmp/pip-req-tracker-rkweg0zg 2021-07-13T09:01:41,631 Created temporary directory: /tmp/pip-wheel-ifs5767x 2021-07-13T09:01:41,660 1 location(s) to search for versions of sshmm: 2021-07-13T09:01:41,660 * https://pypi.org/simple/sshmm/ 2021-07-13T09:01:41,661 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/ 2021-07-13T09:01:41,661 Getting page https://pypi.org/simple/sshmm/ 2021-07-13T09:01:41,662 Found index url https://pypi.org/simple 2021-07-13T09:01:41,862 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/) 2021-07-13T09:01:41,863 Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1 2021-07-13T09:01:41,863 Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2 2021-07-13T09:01:41,863 Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3 2021-07-13T09:01:41,864 Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4 2021-07-13T09:01:41,864 Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0 2021-07-13T09:01:41,864 Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1 2021-07-13T09:01:41,865 Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2 2021-07-13T09:01:41,865 Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4 2021-07-13T09:01:41,865 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/) 2021-07-13T09:01:41,865 Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5 2021-07-13T09:01:41,866 Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6 2021-07-13T09:01:41,866 Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7 2021-07-13T09:01:41,866 Skipping link: not a file: https://pypi.org/simple/sshmm/ 2021-07-13T09:01:41,868 Given no hashes to check 1 links for project 'sshmm': discarding no candidates 2021-07-13T09:01:41,887 Collecting sshmm==1.0.6 2021-07-13T09:01:41,889 Created temporary directory: /tmp/pip-unpack-0fqy_ivi 2021-07-13T09:01:42,074 Downloading sshmm-1.0.6.tar.gz (105 kB) 2021-07-13T09:01:42,188 Added sshmm==1.0.6 from https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 to build tracker '/tmp/pip-req-tracker-rkweg0zg' 2021-07-13T09:01:42,189 Running setup.py (path:/tmp/pip-wheel-ifs5767x/sshmm_a9caca49026b4d83bf7f442657a6cfde/setup.py) egg_info for package sshmm 2021-07-13T09:01:42,190 Created temporary directory: /tmp/pip-pip-egg-info-eyirwph8 2021-07-13T09:01:42,190 Running command python setup.py egg_info 2021-07-13T09:01:43,368 running egg_info 2021-07-13T09:01:43,371 creating /tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info 2021-07-13T09:01:43,372 writing /tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/PKG-INFO 2021-07-13T09:01:43,374 writing dependency_links to /tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/dependency_links.txt 2021-07-13T09:01:43,376 writing requirements to /tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/requires.txt 2021-07-13T09:01:43,377 writing top-level names to /tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/top_level.txt 2021-07-13T09:01:43,379 writing manifest file '/tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/SOURCES.txt' 2021-07-13T09:01:43,710 reading manifest file '/tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/SOURCES.txt' 2021-07-13T09:01:43,714 writing manifest file '/tmp/pip-pip-egg-info-eyirwph8/sshmm.egg-info/SOURCES.txt' 2021-07-13T09:01:43,786 Source in /tmp/pip-wheel-ifs5767x/sshmm_a9caca49026b4d83bf7f442657a6cfde has version 1.0.6, which satisfies requirement sshmm==1.0.6 from https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 2021-07-13T09:01:43,787 Removed sshmm==1.0.6 from https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 from build tracker '/tmp/pip-req-tracker-rkweg0zg' 2021-07-13T09:01:43,790 Created temporary directory: /tmp/pip-unpack-vm_kk5s8 2021-07-13T09:01:43,791 Building wheels for collected packages: sshmm 2021-07-13T09:01:43,795 Created temporary directory: /tmp/pip-wheel-0p93i9fs 2021-07-13T09:01:43,795 Building wheel for sshmm (setup.py): started 2021-07-13T09:01:43,795 Destination directory: /tmp/pip-wheel-0p93i9fs 2021-07-13T09:01:43,796 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ifs5767x/sshmm_a9caca49026b4d83bf7f442657a6cfde/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ifs5767x/sshmm_a9caca49026b4d83bf7f442657a6cfde/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0p93i9fs 2021-07-13T09:01:44,979 running bdist_wheel 2021-07-13T09:01:45,137 running build 2021-07-13T09:01:45,137 running build_py 2021-07-13T09:01:45,278 creating build 2021-07-13T09:01:45,279 creating build/lib.linux-armv7l-3.9 2021-07-13T09:01:45,280 creating build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,281 copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,283 copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,285 copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,288 copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,289 copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,293 copying sshmm/SimpleQueue.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,294 copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,297 copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,299 copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,302 copying sshmm/log.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,306 creating build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T09:01:45,307 copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T09:01:45,312 copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T09:01:45,316 copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T09:01:45,319 copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T09:01:45,323 copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T09:01:45,328 running build_ext 2021-07-13T09:01:45,334 building 'cEstimate' extension 2021-07-13T09:01:45,335 creating build/temp.linux-armv7l-3.9 2021-07-13T09:01:45,335 creating build/temp.linux-armv7l-3.9/sshmm 2021-07-13T09:01:45,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o 2021-07-13T09:01:45,745 sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’: 2021-07-13T09:01:45,745 sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-13T09:01:45,745 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-13T09:01:45,746 | ^~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,746 sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-13T09:01:45,746 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-13T09:01:45,747 | ^ 2021-07-13T09:01:45,763 sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:01:45,765 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,765 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,765 | ^ 2021-07-13T09:01:45,766 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,766 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,766 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,766 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,766 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,766 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,768 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,768 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,768 | ^ 2021-07-13T09:01:45,769 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,769 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,769 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,769 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:01:45,769 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:01:45,769 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,771 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,771 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,771 | ^ 2021-07-13T09:01:45,772 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,772 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,772 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,772 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,772 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,774 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,774 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,774 | ^ 2021-07-13T09:01:45,774 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,774 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,775 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,775 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,775 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,775 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,777 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,777 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,777 | ^ 2021-07-13T09:01:45,777 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,777 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,777 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,778 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:01:45,778 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:01:45,778 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,780 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,780 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,780 | ^ 2021-07-13T09:01:45,780 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,780 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,780 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,780 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,781 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,781 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,783 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,783 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,783 | ^ 2021-07-13T09:01:45,784 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,784 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,784 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,784 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,784 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,784 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,786 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,786 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,786 | ^ 2021-07-13T09:01:45,786 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,787 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,787 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,787 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:01:45,787 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:01:45,787 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,789 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,789 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,789 | ^ 2021-07-13T09:01:45,789 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,789 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,789 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,789 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,790 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,790 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,791 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,791 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,791 | ^ 2021-07-13T09:01:45,791 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,791 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,791 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,791 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,791 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,792 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,792 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,792 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,792 | ^ 2021-07-13T09:01:45,793 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,793 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,793 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,793 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:01:45,793 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:01:45,793 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:45,794 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:01:45,794 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:01:45,794 | ^ 2021-07-13T09:01:45,794 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:01:45,794 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:01:45,794 from sshmm/cEstimate.c:24: 2021-07-13T09:01:45,794 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:01:45,795 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:01:45,795 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:01:46,951 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:01:47,066 running build_scripts 2021-07-13T09:01:47,067 creating build/scripts-3.9 2021-07-13T09:01:47,068 copying and adjusting bin/preprocess_dataset -> build/scripts-3.9 2021-07-13T09:01:47,071 copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9 2021-07-13T09:01:47,073 copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9 2021-07-13T09:01:47,075 copying and adjusting bin/draw_model_graph -> build/scripts-3.9 2021-07-13T09:01:47,076 changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755 2021-07-13T09:01:47,076 changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755 2021-07-13T09:01:47,076 changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755 2021-07-13T09:01:47,077 changing mode of build/scripts-3.9/draw_model_graph from 644 to 755 2021-07-13T09:01:47,087 installing to build/bdist.linux-armv7l/wheel 2021-07-13T09:01:47,087 running install 2021-07-13T09:01:47,089 running install_lib 2021-07-13T09:01:47,093 creating build/bdist.linux-armv7l 2021-07-13T09:01:47,093 creating build/bdist.linux-armv7l/wheel 2021-07-13T09:01:47,095 creating build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,096 copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,099 copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,101 copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,104 copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,106 copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,109 copying build/lib.linux-armv7l-3.9/sshmm/SimpleQueue.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,111 copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,113 copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,116 copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,119 copying build/lib.linux-armv7l-3.9/sshmm/log.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T09:01:47,122 creating build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T09:01:47,123 copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T09:01:47,126 copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T09:01:47,129 copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T09:01:47,132 copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T09:01:47,135 copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T09:01:47,138 copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-13T09:01:47,143 running install_egg_info 2021-07-13T09:01:47,170 running egg_info 2021-07-13T09:01:47,171 writing sshmm.egg-info/PKG-INFO 2021-07-13T09:01:47,173 writing dependency_links to sshmm.egg-info/dependency_links.txt 2021-07-13T09:01:47,176 writing requirements to sshmm.egg-info/requires.txt 2021-07-13T09:01:47,177 writing top-level names to sshmm.egg-info/top_level.txt 2021-07-13T09:01:47,182 reading manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-13T09:01:47,187 writing manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-13T09:01:47,189 Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.6-py3.9.egg-info 2021-07-13T09:01:47,203 running install_scripts 2021-07-13T09:01:47,264 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data 2021-07-13T09:01:47,265 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts 2021-07-13T09:01:47,266 copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts 2021-07-13T09:01:47,268 copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts 2021-07-13T09:01:47,271 copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts 2021-07-13T09:01:47,273 copying build/scripts-3.9/draw_model_graph -> build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts 2021-07-13T09:01:47,275 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts/batch_seqstructhmm to 755 2021-07-13T09:01:47,275 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts/preprocess_dataset to 755 2021-07-13T09:01:47,276 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts/train_seqstructhmm to 755 2021-07-13T09:01:47,276 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.6.data/scripts/draw_model_graph to 755 2021-07-13T09:01:47,302 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.6.dist-info/WHEEL 2021-07-13T09:01:47,305 creating '/tmp/pip-wheel-0p93i9fs/sshmm-1.0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T09:01:47,326 adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T09:01:47,333 adding 'sshmm/MyHMM.py' 2021-07-13T09:01:47,334 adding 'sshmm/SimpleQueue.py' 2021-07-13T09:01:47,335 adding 'sshmm/__init__.py' 2021-07-13T09:01:47,336 adding 'sshmm/log.py' 2021-07-13T09:01:47,338 adding 'sshmm/pwm.py' 2021-07-13T09:01:47,339 adding 'sshmm/seq_hmm.py' 2021-07-13T09:01:47,342 adding 'sshmm/seqstructhmm.py' 2021-07-13T09:01:47,344 adding 'sshmm/sequence_container.py' 2021-07-13T09:01:47,345 adding 'sshmm/setup.py' 2021-07-13T09:01:47,346 adding 'sshmm/structure_prediction.py' 2021-07-13T09:01:47,350 adding 'sshmm/img/A.png' 2021-07-13T09:01:47,353 adding 'sshmm/img/C.png' 2021-07-13T09:01:47,355 adding 'sshmm/img/G.png' 2021-07-13T09:01:47,356 adding 'sshmm/img/T.png' 2021-07-13T09:01:47,358 adding 'sshmm/img/U.png' 2021-07-13T09:01:47,361 adding 'sshmm-1.0.6.data/scripts/batch_seqstructhmm' 2021-07-13T09:01:47,363 adding 'sshmm-1.0.6.data/scripts/draw_model_graph' 2021-07-13T09:01:47,365 adding 'sshmm-1.0.6.data/scripts/preprocess_dataset' 2021-07-13T09:01:47,367 adding 'sshmm-1.0.6.data/scripts/train_seqstructhmm' 2021-07-13T09:01:47,369 adding 'sshmm-1.0.6.dist-info/METADATA' 2021-07-13T09:01:47,370 adding 'sshmm-1.0.6.dist-info/WHEEL' 2021-07-13T09:01:47,371 adding 'sshmm-1.0.6.dist-info/top_level.txt' 2021-07-13T09:01:47,372 adding 'sshmm-1.0.6.dist-info/RECORD' 2021-07-13T09:01:47,375 removing build/bdist.linux-armv7l/wheel 2021-07-13T09:01:47,471 Building wheel for sshmm (setup.py): finished with status 'done' 2021-07-13T09:01:47,474 Created wheel for sshmm: filename=sshmm-1.0.6-cp39-cp39-linux_armv7l.whl size=130770 sha256=4451f79da12d6c5a2858cb19f2babdb51213312b3e56b324745ceb8267461aa5 2021-07-13T09:01:47,475 Stored in directory: /tmp/pip-ephem-wheel-cache-doqrszk5/wheels/fd/37/88/fbaa65856510faa2a58909cfbc85f085b78ec0bc55eb163a00 2021-07-13T09:01:47,484 Successfully built sshmm 2021-07-13T09:01:47,494 Removed build tracker: '/tmp/pip-req-tracker-rkweg0zg'