2021-07-13T09:12:19,897 Created temporary directory: /tmp/pip-ephem-wheel-cache-1xi81ted 2021-07-13T09:12:19,900 Created temporary directory: /tmp/pip-req-tracker-ee194ya3 2021-07-13T09:12:19,901 Initialized build tracking at /tmp/pip-req-tracker-ee194ya3 2021-07-13T09:12:19,901 Created build tracker: /tmp/pip-req-tracker-ee194ya3 2021-07-13T09:12:19,901 Entered build tracker: /tmp/pip-req-tracker-ee194ya3 2021-07-13T09:12:19,902 Created temporary directory: /tmp/pip-wheel-rmxkbftt 2021-07-13T09:12:19,932 1 location(s) to search for versions of mikado: 2021-07-13T09:12:19,932 * https://pypi.org/simple/mikado/ 2021-07-13T09:12:19,932 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2021-07-13T09:12:19,933 Getting page https://pypi.org/simple/mikado/ 2021-07-13T09:12:19,934 Found index url https://pypi.org/simple 2021-07-13T09:12:20,035 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2021-07-13T09:12:20,036 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2021-07-13T09:12:20,036 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2021-07-13T09:12:20,036 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0 2021-07-13T09:12:20,037 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1 2021-07-13T09:12:20,037 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2 2021-07-13T09:12:20,037 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1 2021-07-13T09:12:20,038 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2 2021-07-13T09:12:20,055 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/) 2021-07-13T09:12:20,056 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4 2021-07-13T09:12:20,056 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1 2021-07-13T09:12:20,057 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2 2021-07-13T09:12:20,057 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2021-07-13T09:12:20,058 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2021-07-13T09:12:20,058 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2021-07-13T09:12:20,059 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2021-07-13T09:12:20,060 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2021-07-13T09:12:20,060 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2021-07-13T09:12:20,061 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2021-07-13T09:12:20,061 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2021-07-13T09:12:20,062 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2021-07-13T09:12:20,062 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2021-07-13T09:12:20,063 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2021-07-13T09:12:20,063 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2021-07-13T09:12:20,064 Skipping link: not a file: https://pypi.org/simple/mikado/ 2021-07-13T09:12:20,067 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2021-07-13T09:12:20,089 Collecting mikado==1.2.1 2021-07-13T09:12:20,091 Created temporary directory: /tmp/pip-unpack-zkrhtwck 2021-07-13T09:12:21,592 Downloading Mikado-1.2.1.tar.gz (17.0 MB) 2021-07-13T09:12:24,645 Added mikado==1.2.1 from https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 to build tracker '/tmp/pip-req-tracker-ee194ya3' 2021-07-13T09:12:24,647 Running setup.py (path:/tmp/pip-wheel-rmxkbftt/mikado_87ab0711e91c402bab47e777daab5a11/setup.py) egg_info for package mikado 2021-07-13T09:12:24,647 Created temporary directory: /tmp/pip-pip-egg-info-hap_nyt6 2021-07-13T09:12:24,648 Running command python setup.py egg_info 2021-07-13T09:12:26,492 running egg_info 2021-07-13T09:12:26,494 creating /tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info 2021-07-13T09:12:26,496 writing /tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/PKG-INFO 2021-07-13T09:12:26,498 writing dependency_links to /tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/dependency_links.txt 2021-07-13T09:12:26,500 writing entry points to /tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/entry_points.txt 2021-07-13T09:12:26,501 writing requirements to /tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/requires.txt 2021-07-13T09:12:26,502 writing top-level names to /tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/top_level.txt 2021-07-13T09:12:26,504 writing manifest file '/tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/SOURCES.txt' 2021-07-13T09:12:26,689 reading manifest file '/tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/SOURCES.txt' 2021-07-13T09:12:26,691 reading manifest template 'MANIFEST.in' 2021-07-13T09:12:27,495 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-13T09:12:27,495 adding license file 'AUTHORS' 2021-07-13T09:12:27,517 writing manifest file '/tmp/pip-pip-egg-info-hap_nyt6/Mikado.egg-info/SOURCES.txt' 2021-07-13T09:12:27,619 Source in /tmp/pip-wheel-rmxkbftt/mikado_87ab0711e91c402bab47e777daab5a11 has version 1.2.1, which satisfies requirement mikado==1.2.1 from https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 2021-07-13T09:12:27,620 Removed mikado==1.2.1 from https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 from build tracker '/tmp/pip-req-tracker-ee194ya3' 2021-07-13T09:12:27,624 Created temporary directory: /tmp/pip-unpack-fr7y7_xs 2021-07-13T09:12:27,624 Building wheels for collected packages: mikado 2021-07-13T09:12:27,628 Created temporary directory: /tmp/pip-wheel-a0xi5u0o 2021-07-13T09:12:27,628 Building wheel for mikado (setup.py): started 2021-07-13T09:12:27,629 Destination directory: /tmp/pip-wheel-a0xi5u0o 2021-07-13T09:12:27,629 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rmxkbftt/mikado_87ab0711e91c402bab47e777daab5a11/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rmxkbftt/mikado_87ab0711e91c402bab47e777daab5a11/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-a0xi5u0o 2021-07-13T09:12:29,467 running bdist_wheel 2021-07-13T09:12:29,473 running build 2021-07-13T09:12:29,473 running build_py 2021-07-13T09:12:29,635 creating build/lib.linux-armv7l-3.9 2021-07-13T09:12:29,635 creating build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:12:29,637 copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:12:29,639 copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:12:29,641 copying Mikado/version.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:12:29,643 creating build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:12:29,644 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:12:29,646 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:12:29,648 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:12:29,651 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:12:29,654 creating build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:29,655 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:29,659 creating build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,660 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,662 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,664 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,666 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,669 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,673 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:29,676 creating build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:12:29,677 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:12:29,680 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:12:29,682 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:12:29,686 creating build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:12:29,687 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:12:29,689 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:12:29,691 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:12:29,693 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:12:29,696 creating build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,697 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,700 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,702 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,704 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,707 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,711 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,714 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,715 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,720 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:12:29,724 creating build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,724 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,727 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,730 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,731 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,735 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,737 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,739 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,741 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,743 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,745 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,747 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,751 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,754 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,757 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,759 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,763 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,765 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,768 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,771 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,773 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,776 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,781 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,785 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,789 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,792 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:29,797 creating build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:12:29,798 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:12:29,800 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:12:29,807 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:12:29,809 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:12:29,813 creating build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,813 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,816 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,818 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,820 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,823 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,826 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,829 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:12:29,833 creating build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:29,834 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:29,836 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:29,839 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:29,841 creating build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:29,842 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:29,845 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:29,847 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:29,850 creating build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,851 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,854 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,857 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,858 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,861 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,866 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,870 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:12:29,876 creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,878 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,884 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,888 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,895 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,899 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,902 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,908 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:12:29,914 creating build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:12:29,916 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:12:29,924 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:12:29,927 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:12:29,931 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:12:29,934 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:12:29,939 creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,940 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,944 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,947 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,949 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,952 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,954 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,956 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,958 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,961 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:12:29,962 running egg_info 2021-07-13T09:12:29,977 writing Mikado.egg-info/PKG-INFO 2021-07-13T09:12:29,978 writing dependency_links to Mikado.egg-info/dependency_links.txt 2021-07-13T09:12:29,980 writing entry points to Mikado.egg-info/entry_points.txt 2021-07-13T09:12:29,981 writing requirements to Mikado.egg-info/requires.txt 2021-07-13T09:12:29,982 writing top-level names to Mikado.egg-info/top_level.txt 2021-07-13T09:12:30,001 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-13T09:12:30,033 reading manifest template 'MANIFEST.in' 2021-07-13T09:12:30,842 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-13T09:12:30,842 adding license file 'AUTHORS' 2021-07-13T09:12:30,877 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-13T09:12:30,909 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:30,912 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:30,914 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:30,915 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:30,918 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:12:30,921 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:30,933 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:30,935 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:30,937 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:30,944 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:30,946 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:30,948 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,100 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,102 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,105 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,107 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,111 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,118 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,148 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,187 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,191 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,193 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,195 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,197 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,200 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,203 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,206 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,209 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,211 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:12:31,350 creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,351 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,353 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,355 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,357 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,361 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,364 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,367 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,369 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,372 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,374 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,379 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,384 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,390 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,394 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,398 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,402 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,404 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,407 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,409 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,413 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,416 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,419 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,422 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,424 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,427 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,429 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,432 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,434 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,436 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,439 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,441 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,444 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,446 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,449 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,451 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,453 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,456 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,458 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,461 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,464 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,466 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,468 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,471 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,473 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,475 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,478 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,481 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,483 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,485 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,488 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,490 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,493 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,496 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,498 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,501 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,504 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,507 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,511 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,514 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,517 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,520 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,523 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,526 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,529 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,532 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,535 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,538 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,541 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,545 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,549 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,553 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,556 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,559 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,562 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,565 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,567 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:12:31,570 creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:12:31,571 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:12:31,573 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:12:31,575 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:12:31,578 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:31,597 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:31,600 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:31,605 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:31,607 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:31,609 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:31,612 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:31,614 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:31,617 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:12:31,619 creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,620 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,622 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,624 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,626 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,629 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,631 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,633 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,635 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,638 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:12:31,653 running build_ext 2021-07-13T09:12:31,657 building 'Mikado.utilities.overlap' extension 2021-07-13T09:12:31,658 creating build/temp.linux-armv7l-3.9 2021-07-13T09:12:31,658 creating build/temp.linux-armv7l-3.9/Mikado 2021-07-13T09:12:31,659 creating build/temp.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:12:31,659 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o 2021-07-13T09:12:32,048 Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:12:32,050 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,050 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,050 | ^ 2021-07-13T09:12:32,051 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,051 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,051 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,052 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,052 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,052 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,054 Mikado/utilities/overlap.c:2763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,054 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,054 | ^ 2021-07-13T09:12:32,055 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,055 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,055 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,055 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:32,055 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:32,055 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,058 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,058 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,058 | ^ 2021-07-13T09:12:32,058 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,058 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,058 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,058 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,059 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,059 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,061 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,061 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,061 | ^ 2021-07-13T09:12:32,061 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,061 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,061 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,062 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,062 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,062 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,064 Mikado/utilities/overlap.c:2763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,064 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,064 | ^ 2021-07-13T09:12:32,064 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,064 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,064 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,065 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:32,065 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:32,065 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,067 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,067 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,067 | ^ 2021-07-13T09:12:32,067 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,067 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,067 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,067 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,068 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,068 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,069 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,070 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,070 | ^ 2021-07-13T09:12:32,070 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,070 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,070 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,070 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,070 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,070 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,071 Mikado/utilities/overlap.c:2779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,071 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,071 | ^ 2021-07-13T09:12:32,072 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,072 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,072 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,072 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:32,072 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:32,072 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,073 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,073 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,073 | ^ 2021-07-13T09:12:32,074 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,074 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,074 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,074 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,074 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,074 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,075 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,075 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,075 | ^ 2021-07-13T09:12:32,076 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,076 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,076 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,076 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,076 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,076 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,077 Mikado/utilities/overlap.c:2779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,077 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,077 | ^ 2021-07-13T09:12:32,078 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,078 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,078 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,078 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:32,078 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:32,078 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:32,079 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:32,079 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:32,080 | ^ 2021-07-13T09:12:32,080 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:32,080 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:32,080 from Mikado/utilities/overlap.c:16: 2021-07-13T09:12:32,080 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:32,080 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:32,080 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:33,954 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:12:34,071 building 'Mikado.scales.f1' extension 2021-07-13T09:12:34,072 creating build/temp.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:12:34,072 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o 2021-07-13T09:12:34,465 Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:12:34,466 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,466 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,466 | ^ 2021-07-13T09:12:34,467 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,467 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,467 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,467 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,467 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,467 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,468 Mikado/scales/f1.c:2581:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,468 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,468 | ^ 2021-07-13T09:12:34,468 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,468 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,469 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,469 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:34,469 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:34,469 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,469 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,469 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,469 | ^ 2021-07-13T09:12:34,470 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,470 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,470 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,470 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,470 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,470 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,471 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,471 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,471 | ^ 2021-07-13T09:12:34,471 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,471 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,471 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,471 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,471 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,472 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,472 Mikado/scales/f1.c:2581:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,472 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,472 | ^ 2021-07-13T09:12:34,472 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,472 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,472 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,473 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:34,473 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:34,473 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,473 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,473 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,473 | ^ 2021-07-13T09:12:34,474 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,474 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,474 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,474 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,474 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,474 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,475 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,475 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,476 | ^ 2021-07-13T09:12:34,476 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,476 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,476 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,476 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,476 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,476 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,477 Mikado/scales/f1.c:2597:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,477 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,477 | ^ 2021-07-13T09:12:34,477 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,477 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,477 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,477 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:34,477 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:34,477 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,478 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,478 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,478 | ^ 2021-07-13T09:12:34,478 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,478 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,479 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,479 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,479 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,479 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,479 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,479 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,480 | ^ 2021-07-13T09:12:34,480 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,480 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,480 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,480 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,480 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,480 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,481 Mikado/scales/f1.c:2597:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,481 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,481 | ^ 2021-07-13T09:12:34,481 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,481 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,481 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,481 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:34,481 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:34,481 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:34,482 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:34,482 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:34,482 | ^ 2021-07-13T09:12:34,482 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:34,482 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:34,483 from Mikado/scales/f1.c:16: 2021-07-13T09:12:34,483 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:34,483 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:34,483 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:35,718 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/f1.o -o build/lib.linux-armv7l-3.9/Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:12:35,830 building 'Mikado.scales.contrast' extension 2021-07-13T09:12:35,830 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o 2021-07-13T09:12:36,386 Mikado/scales/contrast.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:12:36,390 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,391 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,391 | ^ 2021-07-13T09:12:36,391 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,391 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,391 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,391 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,392 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,392 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,396 Mikado/scales/contrast.c:8326:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,396 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,396 | ^ 2021-07-13T09:12:36,396 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,397 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,397 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,397 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:36,397 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:36,397 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,401 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,401 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,401 | ^ 2021-07-13T09:12:36,402 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,402 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,402 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,402 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,402 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,402 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,406 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,406 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,407 | ^ 2021-07-13T09:12:36,407 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,407 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,407 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,407 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,407 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,407 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,411 Mikado/scales/contrast.c:8326:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,411 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,411 | ^ 2021-07-13T09:12:36,412 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,412 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,412 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,412 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:36,412 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:36,412 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,416 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,416 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,417 | ^ 2021-07-13T09:12:36,417 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,417 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,417 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,417 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,417 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,417 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,422 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,423 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,423 | ^ 2021-07-13T09:12:36,423 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,423 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,423 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,423 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,423 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,423 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,427 Mikado/scales/contrast.c:8342:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,428 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,428 | ^ 2021-07-13T09:12:36,428 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,428 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,428 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,428 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:36,428 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:36,429 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,432 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,433 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,433 | ^ 2021-07-13T09:12:36,433 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,433 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,433 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,433 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,433 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,434 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,438 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,438 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,438 | ^ 2021-07-13T09:12:36,438 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,438 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,438 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,438 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,439 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,439 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,443 Mikado/scales/contrast.c:8342:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,443 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,443 | ^ 2021-07-13T09:12:36,443 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,443 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,443 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,443 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:36,444 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:36,444 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:36,448 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:36,448 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:36,448 | ^ 2021-07-13T09:12:36,448 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:36,448 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:36,448 from Mikado/scales/contrast.c:16: 2021-07-13T09:12:36,449 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:36,449 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:36,449 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:46,541 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o -o build/lib.linux-armv7l-3.9/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:12:46,667 building 'Mikado.utilities.intervaltree' extension 2021-07-13T09:12:46,668 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/intervaltree.o 2021-07-13T09:12:47,241 Mikado/utilities/intervaltree.c: In function ‘__Pyx_modinit_type_init_code’: 2021-07-13T09:12:47,247 Mikado/utilities/intervaltree.c:12138:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T09:12:47,248 12138 | __pyx_type_6Mikado_9utilities_12intervaltree_IntervalNode.tp_print = 0; 2021-07-13T09:12:47,248 | ^ 2021-07-13T09:12:47,254 Mikado/utilities/intervaltree.c:12149:56: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T09:12:47,254 12149 | __pyx_type_6Mikado_9utilities_12intervaltree_Interval.tp_print = 0; 2021-07-13T09:12:47,254 | ^ 2021-07-13T09:12:47,261 Mikado/utilities/intervaltree.c:12158:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T09:12:47,261 12158 | __pyx_type_6Mikado_9utilities_12intervaltree_IntervalTree.tp_print = 0; 2021-07-13T09:12:47,261 | ^ 2021-07-13T09:12:47,279 Mikado/utilities/intervaltree.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:12:47,286 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,286 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,286 | ^ 2021-07-13T09:12:47,286 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,287 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,287 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,287 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,287 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,287 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,294 Mikado/utilities/intervaltree.c:12722:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,294 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,295 | ^ 2021-07-13T09:12:47,295 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,295 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,295 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,295 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:47,295 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:47,295 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,302 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,302 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,302 | ^ 2021-07-13T09:12:47,302 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,303 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,303 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,303 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,303 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,310 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,310 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,310 | ^ 2021-07-13T09:12:47,310 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,310 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,310 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,310 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,311 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,311 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,317 Mikado/utilities/intervaltree.c:12722:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,318 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,318 | ^ 2021-07-13T09:12:47,318 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,318 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,318 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,318 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:47,318 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:47,318 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,325 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,325 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,325 | ^ 2021-07-13T09:12:47,326 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,326 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,326 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,326 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,326 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,326 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,335 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,335 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,335 | ^ 2021-07-13T09:12:47,335 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,335 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,336 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,336 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,336 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,336 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,342 Mikado/utilities/intervaltree.c:12738:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,343 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,343 | ^ 2021-07-13T09:12:47,343 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,343 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,343 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,343 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:47,343 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:47,344 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,350 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,350 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,351 | ^ 2021-07-13T09:12:47,351 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,351 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,351 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,351 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,351 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,351 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,358 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,358 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,358 | ^ 2021-07-13T09:12:47,359 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,359 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,359 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,359 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,359 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,359 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,366 Mikado/utilities/intervaltree.c:12738:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,366 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,366 | ^ 2021-07-13T09:12:47,366 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,366 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,366 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,367 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:12:47,367 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:12:47,367 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,373 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:12:47,374 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:12:47,374 | ^ 2021-07-13T09:12:47,374 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:12:47,374 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:12:47,374 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:12:47,374 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:12:47,374 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:12:47,375 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:12:47,767 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T09:12:47,885 Building wheel for mikado (setup.py): finished with status 'error' 2021-07-13T09:12:47,885 ERROR: Failed building wheel for mikado 2021-07-13T09:12:47,886 Running setup.py clean for mikado 2021-07-13T09:12:47,886 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rmxkbftt/mikado_87ab0711e91c402bab47e777daab5a11/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rmxkbftt/mikado_87ab0711e91c402bab47e777daab5a11/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T09:12:49,707 running clean 2021-07-13T09:12:49,709 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T09:12:49,714 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T09:12:49,815 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T09:12:49,816 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T09:12:49,911 Failed to build mikado 2021-07-13T09:12:49,912 ERROR: Failed to build one or more wheels 2021-07-13T09:12:49,912 Exception information: 2021-07-13T09:12:49,912 Traceback (most recent call last): 2021-07-13T09:12:49,912 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T09:12:49,912 status = self.run(options, args) 2021-07-13T09:12:49,912 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T09:12:49,912 return func(self, options, args) 2021-07-13T09:12:49,912 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T09:12:49,912 raise CommandError( 2021-07-13T09:12:49,912 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T09:12:49,915 Removed build tracker: '/tmp/pip-req-tracker-ee194ya3'