2021-07-13T09:35:42,967 Created temporary directory: /tmp/pip-ephem-wheel-cache-y5il5x_g 2021-07-13T09:35:42,970 Created temporary directory: /tmp/pip-req-tracker-b8_pt56s 2021-07-13T09:35:42,971 Initialized build tracking at /tmp/pip-req-tracker-b8_pt56s 2021-07-13T09:35:42,971 Created build tracker: /tmp/pip-req-tracker-b8_pt56s 2021-07-13T09:35:42,971 Entered build tracker: /tmp/pip-req-tracker-b8_pt56s 2021-07-13T09:35:42,972 Created temporary directory: /tmp/pip-wheel-zackhjt6 2021-07-13T09:35:43,002 1 location(s) to search for versions of mikado: 2021-07-13T09:35:43,002 * https://pypi.org/simple/mikado/ 2021-07-13T09:35:43,002 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2021-07-13T09:35:43,003 Getting page https://pypi.org/simple/mikado/ 2021-07-13T09:35:43,004 Found index url https://pypi.org/simple 2021-07-13T09:35:43,194 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2021-07-13T09:35:43,195 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2021-07-13T09:35:43,195 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2021-07-13T09:35:43,195 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0 2021-07-13T09:35:43,196 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1 2021-07-13T09:35:43,196 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2 2021-07-13T09:35:43,196 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1 2021-07-13T09:35:43,196 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2 2021-07-13T09:35:43,214 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/) 2021-07-13T09:35:43,214 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4 2021-07-13T09:35:43,215 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1 2021-07-13T09:35:43,215 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2 2021-07-13T09:35:43,216 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2021-07-13T09:35:43,216 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2021-07-13T09:35:43,217 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2021-07-13T09:35:43,217 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2021-07-13T09:35:43,218 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2021-07-13T09:35:43,219 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2021-07-13T09:35:43,219 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2021-07-13T09:35:43,220 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2021-07-13T09:35:43,220 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2021-07-13T09:35:43,221 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2021-07-13T09:35:43,221 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2021-07-13T09:35:43,222 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2021-07-13T09:35:43,222 Skipping link: not a file: https://pypi.org/simple/mikado/ 2021-07-13T09:35:43,226 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2021-07-13T09:35:43,248 Collecting mikado==1.2.2 2021-07-13T09:35:43,249 Created temporary directory: /tmp/pip-unpack-5o3gtrmh 2021-07-13T09:35:46,302 Downloading Mikado-1.2.2.tar.gz (22.1 MB) 2021-07-13T09:35:54,175 Added mikado==1.2.2 from https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 to build tracker '/tmp/pip-req-tracker-b8_pt56s' 2021-07-13T09:35:54,176 Running setup.py (path:/tmp/pip-wheel-zackhjt6/mikado_495a1276051d4753afadea8932796b6b/setup.py) egg_info for package mikado 2021-07-13T09:35:54,177 Created temporary directory: /tmp/pip-pip-egg-info-y57ne6ip 2021-07-13T09:35:54,177 Running command python setup.py egg_info 2021-07-13T09:35:56,035 running egg_info 2021-07-13T09:35:56,039 creating /tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info 2021-07-13T09:35:56,040 writing /tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/PKG-INFO 2021-07-13T09:35:56,043 writing dependency_links to /tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/dependency_links.txt 2021-07-13T09:35:56,045 writing entry points to /tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/entry_points.txt 2021-07-13T09:35:56,047 writing requirements to /tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/requires.txt 2021-07-13T09:35:56,048 writing top-level names to /tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/top_level.txt 2021-07-13T09:35:56,050 writing manifest file '/tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/SOURCES.txt' 2021-07-13T09:35:56,237 reading manifest file '/tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/SOURCES.txt' 2021-07-13T09:35:56,239 reading manifest template 'MANIFEST.in' 2021-07-13T09:35:57,856 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-13T09:35:57,857 adding license file 'AUTHORS' 2021-07-13T09:35:57,937 writing manifest file '/tmp/pip-pip-egg-info-y57ne6ip/Mikado.egg-info/SOURCES.txt' 2021-07-13T09:35:58,041 Source in /tmp/pip-wheel-zackhjt6/mikado_495a1276051d4753afadea8932796b6b has version 1.2.2, which satisfies requirement mikado==1.2.2 from https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 2021-07-13T09:35:58,042 Removed mikado==1.2.2 from https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 from build tracker '/tmp/pip-req-tracker-b8_pt56s' 2021-07-13T09:35:58,046 Created temporary directory: /tmp/pip-unpack-5xnu1uig 2021-07-13T09:35:58,047 Building wheels for collected packages: mikado 2021-07-13T09:35:58,051 Created temporary directory: /tmp/pip-wheel-z1z2fqy9 2021-07-13T09:35:58,051 Building wheel for mikado (setup.py): started 2021-07-13T09:35:58,052 Destination directory: /tmp/pip-wheel-z1z2fqy9 2021-07-13T09:35:58,052 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zackhjt6/mikado_495a1276051d4753afadea8932796b6b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zackhjt6/mikado_495a1276051d4753afadea8932796b6b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-z1z2fqy9 2021-07-13T09:35:59,899 running bdist_wheel 2021-07-13T09:35:59,904 running build 2021-07-13T09:35:59,905 running build_py 2021-07-13T09:36:00,066 creating build/lib.linux-armv7l-3.9 2021-07-13T09:36:00,067 creating build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:36:00,068 copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:36:00,070 copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:36:00,072 copying Mikado/version.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T09:36:00,074 creating build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:36:00,075 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:36:00,077 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:36:00,079 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:36:00,082 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T09:36:00,085 creating build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:00,086 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:00,089 creating build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,090 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,093 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,095 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,097 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,101 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,104 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:00,108 creating build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:36:00,109 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:36:00,114 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:36:00,116 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T09:36:00,120 creating build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:36:00,121 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:36:00,124 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:36:00,126 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:36:00,128 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T09:36:00,132 creating build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,133 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,136 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,138 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,141 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,144 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,149 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,152 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,154 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,158 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T09:36:00,162 creating build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,163 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,166 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,169 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,170 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,173 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,176 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,178 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,180 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,181 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,183 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,185 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,189 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,191 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,194 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,196 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,198 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,200 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,203 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,205 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,207 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,210 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,214 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,217 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,219 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,223 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:00,227 creating build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:36:00,227 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:36:00,230 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:36:00,234 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:36:00,237 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T09:36:00,240 creating build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,241 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,243 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,246 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,248 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,251 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,253 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,256 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T09:36:00,259 creating build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:00,260 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:00,262 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:00,264 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:00,267 creating build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:00,268 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:00,271 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:00,273 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:00,276 creating build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,277 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,279 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,282 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,284 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,287 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,289 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,292 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T09:36:00,294 creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,296 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,298 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,300 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,303 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,306 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,309 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,312 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T09:36:00,314 creating build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:36:00,315 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:36:00,319 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:36:00,320 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:36:00,324 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:36:00,326 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T09:36:00,330 creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,331 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,334 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,337 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,338 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,341 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,342 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,345 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,347 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,349 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T09:36:00,351 running egg_info 2021-07-13T09:36:00,366 writing Mikado.egg-info/PKG-INFO 2021-07-13T09:36:00,368 writing dependency_links to Mikado.egg-info/dependency_links.txt 2021-07-13T09:36:00,370 writing entry points to Mikado.egg-info/entry_points.txt 2021-07-13T09:36:00,371 writing requirements to Mikado.egg-info/requires.txt 2021-07-13T09:36:00,372 writing top-level names to Mikado.egg-info/top_level.txt 2021-07-13T09:36:00,391 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-13T09:36:00,462 reading manifest template 'MANIFEST.in' 2021-07-13T09:36:02,159 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-13T09:36:02,160 adding license file 'AUTHORS' 2021-07-13T09:36:02,283 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-13T09:36:02,409 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:02,412 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:02,414 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:02,416 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:02,419 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T09:36:02,423 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:02,434 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:02,437 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:02,440 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:02,447 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:02,449 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:02,452 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,627 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,630 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,634 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,636 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,640 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,649 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,688 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,741 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,745 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,747 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,749 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,752 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,755 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,759 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,762 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,765 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,768 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T09:36:02,930 creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,931 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,934 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,937 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,939 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,944 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,948 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,953 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,957 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,960 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,964 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,968 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,973 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,977 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,981 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,985 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,988 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,991 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,994 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:02,996 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,000 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,003 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,007 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,010 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,012 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,015 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,018 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,021 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,024 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,027 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,030 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,033 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,037 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,040 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,043 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,045 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,048 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,051 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,054 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,057 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,060 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,064 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,067 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,070 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,072 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,076 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,079 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,083 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,086 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,088 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,091 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,095 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,098 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,101 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,105 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,108 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,112 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,116 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,121 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,125 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,128 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,131 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,135 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,139 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,142 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,145 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,149 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,153 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,157 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,162 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,167 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,172 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,176 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,179 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,183 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,187 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,190 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T09:36:03,193 creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:36:03,195 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:36:03,199 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:36:03,202 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T09:36:03,205 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:03,229 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:03,233 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:03,240 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:03,243 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:03,245 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:03,249 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:03,252 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:03,255 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T09:36:03,258 creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,259 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,261 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,264 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,267 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,270 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,272 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,275 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,278 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,280 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T09:36:03,296 running build_ext 2021-07-13T09:36:03,301 building 'Mikado.utilities.overlap' extension 2021-07-13T09:36:03,302 creating build/temp.linux-armv7l-3.9 2021-07-13T09:36:03,302 creating build/temp.linux-armv7l-3.9/Mikado 2021-07-13T09:36:03,303 creating build/temp.linux-armv7l-3.9/Mikado/utilities 2021-07-13T09:36:03,304 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o 2021-07-13T09:36:03,715 Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:36:03,716 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,717 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,717 | ^ 2021-07-13T09:36:03,717 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,717 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,717 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,718 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,718 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,718 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,719 Mikado/utilities/overlap.c:2763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,719 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,719 | ^ 2021-07-13T09:36:03,719 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,719 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,719 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,719 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:03,720 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:03,720 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,720 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,720 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,720 | ^ 2021-07-13T09:36:03,721 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,721 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,721 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,721 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,721 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,721 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,722 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,722 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,722 | ^ 2021-07-13T09:36:03,722 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,722 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,722 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,722 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,723 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,723 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,723 Mikado/utilities/overlap.c:2763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,723 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,723 | ^ 2021-07-13T09:36:03,724 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,724 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,724 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,724 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:03,724 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:03,724 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,725 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,725 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,725 | ^ 2021-07-13T09:36:03,725 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,725 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,726 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,726 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,726 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,726 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,727 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,727 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,728 | ^ 2021-07-13T09:36:03,728 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,728 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,728 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,728 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,728 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,728 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,729 Mikado/utilities/overlap.c:2779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,729 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,729 | ^ 2021-07-13T09:36:03,729 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,729 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,729 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,729 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:03,730 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:03,730 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,730 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,730 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,730 | ^ 2021-07-13T09:36:03,731 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,731 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,731 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,731 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,731 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,731 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,732 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,732 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,732 | ^ 2021-07-13T09:36:03,732 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,732 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,732 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,732 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,732 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,733 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,733 Mikado/utilities/overlap.c:2779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,733 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,733 | ^ 2021-07-13T09:36:03,733 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,734 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,734 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,734 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:03,734 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:03,734 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:03,735 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:03,735 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:03,735 | ^ 2021-07-13T09:36:03,735 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:03,735 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:03,735 from Mikado/utilities/overlap.c:16: 2021-07-13T09:36:03,735 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:03,735 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:03,736 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:05,574 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:36:05,694 building 'Mikado.scales.f1' extension 2021-07-13T09:36:05,695 creating build/temp.linux-armv7l-3.9/Mikado/scales 2021-07-13T09:36:05,696 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o 2021-07-13T09:36:06,102 Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:36:06,103 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,103 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,103 | ^ 2021-07-13T09:36:06,104 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,104 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,104 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,104 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,104 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,104 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,105 Mikado/scales/f1.c:2581:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,105 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,106 | ^ 2021-07-13T09:36:06,106 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,106 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,106 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,106 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:06,106 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:06,106 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,107 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,107 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,107 | ^ 2021-07-13T09:36:06,107 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,107 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,107 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,108 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,108 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,108 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,108 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,108 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,108 | ^ 2021-07-13T09:36:06,109 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,109 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,109 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,109 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,109 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,109 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,110 Mikado/scales/f1.c:2581:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,110 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,110 | ^ 2021-07-13T09:36:06,110 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,110 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,110 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,110 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:06,110 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:06,110 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,111 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,111 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,111 | ^ 2021-07-13T09:36:06,111 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,111 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,112 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,112 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,112 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,112 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,113 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,113 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,113 | ^ 2021-07-13T09:36:06,113 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,113 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,114 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,114 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,114 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,114 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,114 Mikado/scales/f1.c:2597:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,114 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,115 | ^ 2021-07-13T09:36:06,115 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,115 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,115 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,115 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:06,115 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:06,115 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,116 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,116 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,116 | ^ 2021-07-13T09:36:06,116 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,116 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,116 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,117 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,117 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,117 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,117 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,117 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,117 | ^ 2021-07-13T09:36:06,118 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,118 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,118 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,118 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,118 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,118 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,119 Mikado/scales/f1.c:2597:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,119 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,119 | ^ 2021-07-13T09:36:06,119 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,119 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,119 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,119 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:06,119 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:06,119 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:06,120 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:06,120 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:06,120 | ^ 2021-07-13T09:36:06,120 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:06,120 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:06,121 from Mikado/scales/f1.c:16: 2021-07-13T09:36:06,121 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:06,121 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:06,121 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:07,354 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/f1.o -o build/lib.linux-armv7l-3.9/Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:36:07,462 building 'Mikado.scales.contrast' extension 2021-07-13T09:36:07,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o 2021-07-13T09:36:08,004 Mikado/scales/contrast.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:36:08,008 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,009 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,009 | ^ 2021-07-13T09:36:08,009 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,009 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,009 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,009 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,010 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,014 Mikado/scales/contrast.c:8326:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,014 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,014 | ^ 2021-07-13T09:36:08,015 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,015 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,015 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,015 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:08,015 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:08,015 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,019 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,019 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,019 | ^ 2021-07-13T09:36:08,020 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,020 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,020 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,020 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,020 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,020 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,024 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,024 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,024 | ^ 2021-07-13T09:36:08,025 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,025 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,025 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,025 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,025 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,025 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,029 Mikado/scales/contrast.c:8326:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,029 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,029 | ^ 2021-07-13T09:36:08,030 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,030 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,030 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,030 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:08,030 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:08,030 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,034 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,034 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,034 | ^ 2021-07-13T09:36:08,034 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,035 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,035 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,035 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,035 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,035 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,040 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,041 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,041 | ^ 2021-07-13T09:36:08,041 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,041 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,041 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,041 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,041 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,041 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,045 Mikado/scales/contrast.c:8342:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,045 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,046 | ^ 2021-07-13T09:36:08,046 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,046 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,046 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,046 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:08,046 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:08,046 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,050 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,050 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,050 | ^ 2021-07-13T09:36:08,051 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,051 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,051 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,051 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,051 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,051 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,055 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,055 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,056 | ^ 2021-07-13T09:36:08,056 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,056 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,056 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,056 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,056 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,056 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,060 Mikado/scales/contrast.c:8342:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,060 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,060 | ^ 2021-07-13T09:36:08,061 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,061 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,061 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,061 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:08,061 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:08,061 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:08,065 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:08,065 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:08,066 | ^ 2021-07-13T09:36:08,066 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:08,066 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:08,066 from Mikado/scales/contrast.c:16: 2021-07-13T09:36:08,066 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:08,066 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:08,066 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,134 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o -o build/lib.linux-armv7l-3.9/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so 2021-07-13T09:36:18,264 building 'Mikado.utilities.intervaltree' extension 2021-07-13T09:36:18,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/intervaltree.o 2021-07-13T09:36:18,836 Mikado/utilities/intervaltree.c: In function ‘__Pyx_modinit_type_init_code’: 2021-07-13T09:36:18,842 Mikado/utilities/intervaltree.c:12138:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T09:36:18,842 12138 | __pyx_type_6Mikado_9utilities_12intervaltree_IntervalNode.tp_print = 0; 2021-07-13T09:36:18,842 | ^ 2021-07-13T09:36:18,849 Mikado/utilities/intervaltree.c:12149:56: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T09:36:18,849 12149 | __pyx_type_6Mikado_9utilities_12intervaltree_Interval.tp_print = 0; 2021-07-13T09:36:18,849 | ^ 2021-07-13T09:36:18,855 Mikado/utilities/intervaltree.c:12158:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T09:36:18,856 12158 | __pyx_type_6Mikado_9utilities_12intervaltree_IntervalTree.tp_print = 0; 2021-07-13T09:36:18,856 | ^ 2021-07-13T09:36:18,874 Mikado/utilities/intervaltree.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T09:36:18,880 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,880 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,881 | ^ 2021-07-13T09:36:18,881 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,881 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,881 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,881 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,881 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,881 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,888 Mikado/utilities/intervaltree.c:12722:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,889 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,889 | ^ 2021-07-13T09:36:18,889 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,889 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,889 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,889 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:18,889 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:18,889 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,896 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,896 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,896 | ^ 2021-07-13T09:36:18,897 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,897 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,897 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,897 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,897 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,897 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,904 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,904 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,904 | ^ 2021-07-13T09:36:18,904 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,904 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,904 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,905 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,905 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,905 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,911 Mikado/utilities/intervaltree.c:12722:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,912 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,912 | ^ 2021-07-13T09:36:18,912 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,912 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,912 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,912 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:18,912 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:18,912 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,919 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,919 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,920 | ^ 2021-07-13T09:36:18,920 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,920 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,920 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,920 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,920 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,920 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,929 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,929 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,929 | ^ 2021-07-13T09:36:18,929 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,929 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,929 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,930 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,930 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,930 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,936 Mikado/utilities/intervaltree.c:12738:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,937 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,937 | ^ 2021-07-13T09:36:18,937 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,937 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,937 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,937 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:18,937 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:18,937 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,944 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,944 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,944 | ^ 2021-07-13T09:36:18,944 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,945 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,945 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,945 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,945 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,945 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,952 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,952 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,952 | ^ 2021-07-13T09:36:18,952 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,952 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,952 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,953 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,953 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,953 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,959 Mikado/utilities/intervaltree.c:12738:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,960 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,960 | ^ 2021-07-13T09:36:18,960 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,960 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,960 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,960 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T09:36:18,960 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T09:36:18,960 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:18,967 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T09:36:18,968 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T09:36:18,968 | ^ 2021-07-13T09:36:18,968 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T09:36:18,968 from /usr/include/python3.9/Python.h:97, 2021-07-13T09:36:18,968 from Mikado/utilities/intervaltree.c:17: 2021-07-13T09:36:18,968 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T09:36:18,968 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T09:36:18,968 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T09:36:19,359 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T09:36:19,474 Building wheel for mikado (setup.py): finished with status 'error' 2021-07-13T09:36:19,474 ERROR: Failed building wheel for mikado 2021-07-13T09:36:19,475 Running setup.py clean for mikado 2021-07-13T09:36:19,475 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-zackhjt6/mikado_495a1276051d4753afadea8932796b6b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-zackhjt6/mikado_495a1276051d4753afadea8932796b6b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T09:36:21,318 running clean 2021-07-13T09:36:21,320 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T09:36:21,325 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T09:36:21,427 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T09:36:21,427 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T09:36:21,521 Failed to build mikado 2021-07-13T09:36:21,522 ERROR: Failed to build one or more wheels 2021-07-13T09:36:21,523 Exception information: 2021-07-13T09:36:21,523 Traceback (most recent call last): 2021-07-13T09:36:21,523 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T09:36:21,523 status = self.run(options, args) 2021-07-13T09:36:21,523 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T09:36:21,523 return func(self, options, args) 2021-07-13T09:36:21,523 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T09:36:21,523 raise CommandError( 2021-07-13T09:36:21,523 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T09:36:21,525 Removed build tracker: '/tmp/pip-req-tracker-b8_pt56s'