2021-07-13T10:24:19,184 Created temporary directory: /tmp/pip-ephem-wheel-cache-idxfz261
2021-07-13T10:24:19,187 Created temporary directory: /tmp/pip-req-tracker-pvqs4kyx
2021-07-13T10:24:19,188 Initialized build tracking at /tmp/pip-req-tracker-pvqs4kyx
2021-07-13T10:24:19,188 Created build tracker: /tmp/pip-req-tracker-pvqs4kyx
2021-07-13T10:24:19,188 Entered build tracker: /tmp/pip-req-tracker-pvqs4kyx
2021-07-13T10:24:19,189 Created temporary directory: /tmp/pip-wheel-xzbtrptp
2021-07-13T10:24:19,220 1 location(s) to search for versions of isambard:
2021-07-13T10:24:19,220 * https://pypi.org/simple/isambard/
2021-07-13T10:24:19,221 Fetching project page and analyzing links: https://pypi.org/simple/isambard/
2021-07-13T10:24:19,221 Getting page https://pypi.org/simple/isambard/
2021-07-13T10:24:19,223 Found index url https://pypi.org/simple
2021-07-13T10:24:19,401   Found link https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 (from https://pypi.org/simple/isambard/), version: 2.0.1
2021-07-13T10:24:19,401   Found link https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 (from https://pypi.org/simple/isambard/), version: 2.2.0
2021-07-13T10:24:19,402   Found link https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c (from https://pypi.org/simple/isambard/), version: 2.3.1
2021-07-13T10:24:19,402 Skipping link: not a file: https://pypi.org/simple/isambard/
2021-07-13T10:24:19,420 Given no hashes to check 1 links for project 'isambard': discarding no candidates
2021-07-13T10:24:19,438 Collecting isambard==2.0.1
2021-07-13T10:24:19,440   Created temporary directory: /tmp/pip-unpack-ji5vzxb7
2021-07-13T10:24:19,481   Downloading ISAMBARD-2.0.1.tar.gz (337 kB)
2021-07-13T10:24:19,707   Added isambard==2.0.1 from https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 to build tracker '/tmp/pip-req-tracker-pvqs4kyx'
2021-07-13T10:24:19,708     Running setup.py (path:/tmp/pip-wheel-xzbtrptp/isambard_a52eb8b4b98745898034435f02430cb0/setup.py) egg_info for package isambard
2021-07-13T10:24:19,709     Created temporary directory: /tmp/pip-pip-egg-info-k94hjbzk
2021-07-13T10:24:19,709     Running command python setup.py egg_info
2021-07-13T10:24:21,491     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-xzbtrptp/isambard_a52eb8b4b98745898034435f02430cb0/src/isambard/specifications/ta_polypeptide.pyx
2021-07-13T10:24:21,492       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T10:24:22,307     Compiling src/isambard/specifications/ta_polypeptide.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-13T10:24:22,308     [1/1] Cythonizing src/isambard/specifications/ta_polypeptide.pyx
2021-07-13T10:24:22,514     running egg_info
2021-07-13T10:24:22,518     creating /tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info
2021-07-13T10:24:22,519     writing /tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/PKG-INFO
2021-07-13T10:24:22,529     writing dependency_links to /tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/dependency_links.txt
2021-07-13T10:24:22,531     writing requirements to /tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/requires.txt
2021-07-13T10:24:22,532     writing top-level names to /tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/top_level.txt
2021-07-13T10:24:22,576     writing manifest file '/tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T10:24:22,745     reading manifest file '/tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T10:24:22,747     reading manifest template 'MANIFEST.in'
2021-07-13T10:24:22,778     adding license file 'LICENSE.txt'
2021-07-13T10:24:22,783     writing manifest file '/tmp/pip-pip-egg-info-k94hjbzk/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T10:24:22,915   Source in /tmp/pip-wheel-xzbtrptp/isambard_a52eb8b4b98745898034435f02430cb0 has version 2.0.1, which satisfies requirement isambard==2.0.1 from https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3
2021-07-13T10:24:22,916   Removed isambard==2.0.1 from https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 from build tracker '/tmp/pip-req-tracker-pvqs4kyx'
2021-07-13T10:24:22,921 Created temporary directory: /tmp/pip-unpack-90t2pxeo
2021-07-13T10:24:22,922 Building wheels for collected packages: isambard
2021-07-13T10:24:22,926   Created temporary directory: /tmp/pip-wheel-okmhaiac
2021-07-13T10:24:22,926   Building wheel for isambard (setup.py): started
2021-07-13T10:24:22,927   Destination directory: /tmp/pip-wheel-okmhaiac
2021-07-13T10:24:22,927   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-xzbtrptp/isambard_a52eb8b4b98745898034435f02430cb0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-xzbtrptp/isambard_a52eb8b4b98745898034435f02430cb0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-okmhaiac
2021-07-13T10:24:24,694   running bdist_wheel
2021-07-13T10:24:24,700   running build
2021-07-13T10:24:24,700   running build_py
2021-07-13T10:24:24,841   creating build
2021-07-13T10:24:24,842   creating build/lib.linux-armv7l-3.9
2021-07-13T10:24:24,842   creating build/lib.linux-armv7l-3.9/isambard
2021-07-13T10:24:24,843   copying src/isambard/__init__.py -> build/lib.linux-armv7l-3.9/isambard
2021-07-13T10:24:24,846   creating build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,847   copying src/isambard/specifications/__init__.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,849   copying src/isambard/specifications/nucleic_acid_duplex.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,851   copying src/isambard/specifications/solenoid.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,853   copying src/isambard/specifications/helix.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,855   copying src/isambard/specifications/coiledcoil.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,858   copying src/isambard/specifications/nucleic_acid_strand.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,861   creating build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T10:24:24,861   copying src/isambard/modelling/__init__.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T10:24:24,863   copying src/isambard/modelling/scwrl.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T10:24:24,865   copying src/isambard/modelling/non_canonical.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T10:24:24,868   creating build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T10:24:24,869   copying src/isambard/optimisation/evo_optimizers.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T10:24:24,872   copying src/isambard/optimisation/__init__.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T10:24:24,874   copying src/isambard/optimisation/mmc_optimizer.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T10:24:24,877   copying src/isambard/optimisation/base_evo_opt.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T10:24:24,880   creating build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T10:24:24,881   copying src/isambard/evaluation/contact_order.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T10:24:24,883   copying src/isambard/evaluation/hydrophobic_fitness.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T10:24:24,885   copying src/isambard/evaluation/__init__.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T10:24:24,887   running egg_info
2021-07-13T10:24:24,928   writing src/ISAMBARD.egg-info/PKG-INFO
2021-07-13T10:24:24,930   writing dependency_links to src/ISAMBARD.egg-info/dependency_links.txt
2021-07-13T10:24:24,931   writing requirements to src/ISAMBARD.egg-info/requires.txt
2021-07-13T10:24:24,932   writing top-level names to src/ISAMBARD.egg-info/top_level.txt
2021-07-13T10:24:24,941   reading manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T10:24:24,944   reading manifest template 'MANIFEST.in'
2021-07-13T10:24:24,972   adding license file 'LICENSE.txt'
2021-07-13T10:24:24,977   writing manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T10:24:24,982   creating build/lib.linux-armv7l-3.9/isambard/__pycache__
2021-07-13T10:24:24,983   copying src/isambard/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/__pycache__
2021-07-13T10:24:24,986   copying src/isambard/specifications/ta_polypeptide.c -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:24,999   copying src/isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:25,018   copying src/isambard/specifications/ta_polypeptide.pyx -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T10:24:25,021   creating build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,021   copying src/isambard/specifications/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,024   copying src/isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,027   copying src/isambard/specifications/__pycache__/helix.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,030   copying src/isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,032   copying src/isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,035   copying src/isambard/specifications/__pycache__/solenoid.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T10:24:25,038   creating build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T10:24:25,039   copying src/isambard/modelling/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T10:24:25,042   copying src/isambard/modelling/__pycache__/non_canonical.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T10:24:25,044   copying src/isambard/modelling/__pycache__/scwrl.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T10:24:25,047   creating build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals
2021-07-13T10:24:25,048   copying src/isambard/modelling/reference_ampals/README.md -> build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals
2021-07-13T10:24:25,050   creating build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T10:24:25,051   copying src/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T10:24:25,054   creating build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T10:24:25,055   copying src/isambard/optimisation/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T10:24:25,057   copying src/isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T10:24:25,060   copying src/isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T10:24:25,063   copying src/isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T10:24:25,066   creating build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T10:24:25,067   copying src/isambard/evaluation/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T10:24:25,069   copying src/isambard/evaluation/__pycache__/contact_order.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T10:24:25,071   copying src/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T10:24:25,077   running build_ext
2021-07-13T10:24:25,082   building 'isambard.specifications.ta_polypeptide' extension
2021-07-13T10:24:25,082   creating build/temp.linux-armv7l-3.9
2021-07-13T10:24:25,083   creating build/temp.linux-armv7l-3.9/src
2021-07-13T10:24:25,083   creating build/temp.linux-armv7l-3.9/src/isambard
2021-07-13T10:24:25,084   creating build/temp.linux-armv7l-3.9/src/isambard/specifications
2021-07-13T10:24:25,084   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/isambard/specifications/ta_polypeptide.c -o build/temp.linux-armv7l-3.9/src/isambard/specifications/ta_polypeptide.o
2021-07-13T10:24:36,313   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/isambard/specifications/ta_polypeptide.o -o build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so
2021-07-13T10:24:36,468   installing to build/bdist.linux-armv7l/wheel
2021-07-13T10:24:36,468   running install
2021-07-13T10:24:36,469   running install_lib
2021-07-13T10:24:36,473   creating build/bdist.linux-armv7l
2021-07-13T10:24:36,473   creating build/bdist.linux-armv7l/wheel
2021-07-13T10:24:36,475   creating build/bdist.linux-armv7l/wheel/isambard
2021-07-13T10:24:36,477   creating build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,477   copying build/lib.linux-armv7l-3.9/isambard/specifications/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,480   copying build/lib.linux-armv7l-3.9/isambard/specifications/nucleic_acid_duplex.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,482   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,497   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.pyx -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,500   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.c -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,513   creating build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,514   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/solenoid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,517   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,519   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,521   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,524   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,527   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/helix.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T10:24:36,530   copying build/lib.linux-armv7l-3.9/isambard/specifications/solenoid.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,533   copying build/lib.linux-armv7l-3.9/isambard/specifications/helix.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,536   copying build/lib.linux-armv7l-3.9/isambard/specifications/coiledcoil.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,539   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,561   copying build/lib.linux-armv7l-3.9/isambard/specifications/nucleic_acid_strand.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T10:24:36,564   copying build/lib.linux-armv7l-3.9/isambard/__init__.py -> build/bdist.linux-armv7l/wheel/isambard
2021-07-13T10:24:36,566   creating build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T10:24:36,567   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-07-13T10:24:36,568   copying build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/README.md -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-07-13T10:24:36,571   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T10:24:36,571   copying build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T10:24:36,573   copying build/lib.linux-armv7l-3.9/isambard/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T10:24:36,575   copying build/lib.linux-armv7l-3.9/isambard/modelling/scwrl.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T10:24:36,578   creating build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T10:24:36,579   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/non_canonical.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T10:24:36,581   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T10:24:36,583   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/scwrl.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T10:24:36,585   copying build/lib.linux-armv7l-3.9/isambard/modelling/non_canonical.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T10:24:36,587   creating build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-07-13T10:24:36,588   copying build/lib.linux-armv7l-3.9/isambard/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-07-13T10:24:36,590   creating build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T10:24:36,591   copying build/lib.linux-armv7l-3.9/isambard/optimisation/evo_optimizers.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T10:24:36,594   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T10:24:36,596   copying build/lib.linux-armv7l-3.9/isambard/optimisation/mmc_optimizer.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T10:24:36,598   copying build/lib.linux-armv7l-3.9/isambard/optimisation/base_evo_opt.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T10:24:36,602   creating build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T10:24:36,602   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T10:24:36,605   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T10:24:36,607   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T10:24:36,609   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T10:24:36,613   creating build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T10:24:36,614   copying build/lib.linux-armv7l-3.9/isambard/evaluation/contact_order.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T10:24:36,616   copying build/lib.linux-armv7l-3.9/isambard/evaluation/hydrophobic_fitness.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T10:24:36,618   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T10:24:36,621   creating build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T10:24:36,622   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/contact_order.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T10:24:36,624   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T10:24:36,627   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T10:24:36,628   running install_egg_info
2021-07-13T10:24:36,639   Copying src/ISAMBARD.egg-info to build/bdist.linux-armv7l/wheel/ISAMBARD-2.0.1-py3.9.egg-info
2021-07-13T10:24:36,653   running install_scripts
2021-07-13T10:24:36,697   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-13T10:24:36,701   creating build/bdist.linux-armv7l/wheel/ISAMBARD-2.0.1.dist-info/WHEEL
2021-07-13T10:24:36,704   creating '/tmp/pip-wheel-okmhaiac/ISAMBARD-2.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T10:24:36,707   adding 'isambard/__init__.py'
2021-07-13T10:24:36,709   adding 'isambard/__pycache__/__init__.cpython-36.pyc'
2021-07-13T10:24:36,711   adding 'isambard/evaluation/__init__.py'
2021-07-13T10:24:36,712   adding 'isambard/evaluation/contact_order.py'
2021-07-13T10:24:36,714   adding 'isambard/evaluation/hydrophobic_fitness.py'
2021-07-13T10:24:36,715   adding 'isambard/evaluation/__pycache__/__init__.cpython-36.pyc'
2021-07-13T10:24:36,717   adding 'isambard/evaluation/__pycache__/contact_order.cpython-36.pyc'
2021-07-13T10:24:36,718   adding 'isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc'
2021-07-13T10:24:36,720   adding 'isambard/modelling/__init__.py'
2021-07-13T10:24:36,722   adding 'isambard/modelling/non_canonical.py'
2021-07-13T10:24:36,723   adding 'isambard/modelling/scwrl.py'
2021-07-13T10:24:36,725   adding 'isambard/modelling/__pycache__/__init__.cpython-36.pyc'
2021-07-13T10:24:36,727   adding 'isambard/modelling/__pycache__/non_canonical.cpython-36.pyc'
2021-07-13T10:24:36,728   adding 'isambard/modelling/__pycache__/scwrl.cpython-36.pyc'
2021-07-13T10:24:36,730   adding 'isambard/modelling/reference_ampals/README.md'
2021-07-13T10:24:36,732   adding 'isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle'
2021-07-13T10:24:36,734   adding 'isambard/optimisation/__init__.py'
2021-07-13T10:24:36,736   adding 'isambard/optimisation/base_evo_opt.py'
2021-07-13T10:24:36,739   adding 'isambard/optimisation/evo_optimizers.py'
2021-07-13T10:24:36,741   adding 'isambard/optimisation/mmc_optimizer.py'
2021-07-13T10:24:36,743   adding 'isambard/optimisation/__pycache__/__init__.cpython-36.pyc'
2021-07-13T10:24:36,746   adding 'isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc'
2021-07-13T10:24:36,749   adding 'isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc'
2021-07-13T10:24:36,752   adding 'isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc'
2021-07-13T10:24:36,754   adding 'isambard/specifications/__init__.py'
2021-07-13T10:24:36,755   adding 'isambard/specifications/coiledcoil.py'
2021-07-13T10:24:36,758   adding 'isambard/specifications/helix.py'
2021-07-13T10:24:36,759   adding 'isambard/specifications/nucleic_acid_duplex.py'
2021-07-13T10:24:36,761   adding 'isambard/specifications/nucleic_acid_strand.py'
2021-07-13T10:24:36,763   adding 'isambard/specifications/solenoid.py'
2021-07-13T10:24:36,802   adding 'isambard/specifications/ta_polypeptide.c'
2021-07-13T10:24:36,911   adding 'isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so'
2021-07-13T10:24:37,043   adding 'isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T10:24:37,050   adding 'isambard/specifications/ta_polypeptide.pyx'
2021-07-13T10:24:37,052   adding 'isambard/specifications/__pycache__/__init__.cpython-36.pyc'
2021-07-13T10:24:37,053   adding 'isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc'
2021-07-13T10:24:37,056   adding 'isambard/specifications/__pycache__/helix.cpython-36.pyc'
2021-07-13T10:24:37,058   adding 'isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc'
2021-07-13T10:24:37,060   adding 'isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc'
2021-07-13T10:24:37,062   adding 'isambard/specifications/__pycache__/solenoid.cpython-36.pyc'
2021-07-13T10:24:37,063   adding 'ISAMBARD-2.0.1.dist-info/LICENSE.txt'
2021-07-13T10:24:37,064   adding 'ISAMBARD-2.0.1.dist-info/METADATA'
2021-07-13T10:24:37,065   adding 'ISAMBARD-2.0.1.dist-info/WHEEL'
2021-07-13T10:24:37,066   adding 'ISAMBARD-2.0.1.dist-info/top_level.txt'
2021-07-13T10:24:37,067   adding 'ISAMBARD-2.0.1.dist-info/RECORD'
2021-07-13T10:24:37,079   removing build/bdist.linux-armv7l/wheel
2021-07-13T10:24:37,213   Building wheel for isambard (setup.py): finished with status 'done'
2021-07-13T10:24:37,222   Created wheel for isambard: filename=ISAMBARD-2.0.1-cp39-cp39-linux_armv7l.whl size=593487 sha256=45f89745fb452c115ce88125bc0668253c3f3b887d7ece84108e217dd6760ec8
2021-07-13T10:24:37,223   Stored in directory: /tmp/pip-ephem-wheel-cache-idxfz261/wheels/aa/bb/da/23efb735d261b7d94374777d4d569745a68ed88ecdb5362b12
2021-07-13T10:24:37,234 Successfully built isambard
2021-07-13T10:24:37,269 Removed build tracker: '/tmp/pip-req-tracker-pvqs4kyx'