2021-07-13T10:34:35,607 Created temporary directory: /tmp/pip-ephem-wheel-cache-xf4h481d 2021-07-13T10:34:35,610 Created temporary directory: /tmp/pip-req-tracker-9dzq3asw 2021-07-13T10:34:35,611 Initialized build tracking at /tmp/pip-req-tracker-9dzq3asw 2021-07-13T10:34:35,611 Created build tracker: /tmp/pip-req-tracker-9dzq3asw 2021-07-13T10:34:35,611 Entered build tracker: /tmp/pip-req-tracker-9dzq3asw 2021-07-13T10:34:35,612 Created temporary directory: /tmp/pip-wheel-e625shhc 2021-07-13T10:34:35,642 1 location(s) to search for versions of denovonear: 2021-07-13T10:34:35,642 * https://pypi.org/simple/denovonear/ 2021-07-13T10:34:35,642 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/ 2021-07-13T10:34:35,643 Getting page https://pypi.org/simple/denovonear/ 2021-07-13T10:34:35,645 Found index url https://pypi.org/simple 2021-07-13T10:34:35,741 Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0 2021-07-13T10:34:35,742 Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1 2021-07-13T10:34:35,742 Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2 2021-07-13T10:34:35,742 Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3 2021-07-13T10:34:35,742 Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4 2021-07-13T10:34:35,743 Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0 2021-07-13T10:34:35,743 Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2 2021-07-13T10:34:35,743 Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3 2021-07-13T10:34:35,744 Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4 2021-07-13T10:34:35,744 Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0 2021-07-13T10:34:35,745 Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0 2021-07-13T10:34:35,745 Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1 2021-07-13T10:34:35,746 Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2 2021-07-13T10:34:35,746 Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4 2021-07-13T10:34:35,747 Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5 2021-07-13T10:34:35,747 Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6 2021-07-13T10:34:35,748 Skipping link: not a file: https://pypi.org/simple/denovonear/ 2021-07-13T10:34:35,767 Given no hashes to check 1 links for project 'denovonear': discarding no candidates 2021-07-13T10:34:35,786 Collecting denovonear==0.6.2 2021-07-13T10:34:35,788 Created temporary directory: /tmp/pip-unpack-p03xjkpm 2021-07-13T10:34:36,033 Downloading denovonear-0.6.2.tar.gz (215 kB) 2021-07-13T10:34:36,277 Added denovonear==0.6.2 from https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 to build tracker '/tmp/pip-req-tracker-9dzq3asw' 2021-07-13T10:34:36,278 Running setup.py (path:/tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2/setup.py) egg_info for package denovonear 2021-07-13T10:34:36,279 Created temporary directory: /tmp/pip-pip-egg-info-5_6iv676 2021-07-13T10:34:36,280 Running command python setup.py egg_info 2021-07-13T10:34:37,889 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2/denovonear/site_specific_rates.pyx 2021-07-13T10:34:37,889 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T10:34:38,707 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2/denovonear/weights.pxd 2021-07-13T10:34:38,707 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T10:34:39,436 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2/denovonear/transcript.pxd 2021-07-13T10:34:39,436 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T10:34:40,932 Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T10:34:40,932 Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T10:34:40,933 Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T10:34:40,933 [1/3] Cythonizing denovonear/site_specific_rates.pyx 2021-07-13T10:34:40,933 [2/3] Cythonizing denovonear/weights.pyx 2021-07-13T10:34:40,933 [3/3] Cythonizing denovonear/transcript.pyx 2021-07-13T10:34:41,084 running egg_info 2021-07-13T10:34:41,086 creating /tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info 2021-07-13T10:34:41,087 writing /tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/PKG-INFO 2021-07-13T10:34:41,090 writing dependency_links to /tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/dependency_links.txt 2021-07-13T10:34:41,092 writing entry points to /tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/entry_points.txt 2021-07-13T10:34:41,093 writing requirements to /tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/requires.txt 2021-07-13T10:34:41,094 writing top-level names to /tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/top_level.txt 2021-07-13T10:34:41,096 writing manifest file '/tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/SOURCES.txt' 2021-07-13T10:34:41,252 reading manifest file '/tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/SOURCES.txt' 2021-07-13T10:34:41,254 reading manifest template 'MANIFEST.in' 2021-07-13T10:34:41,267 writing manifest file '/tmp/pip-pip-egg-info-5_6iv676/denovonear.egg-info/SOURCES.txt' 2021-07-13T10:34:41,453 Source in /tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2 has version 0.6.2, which satisfies requirement denovonear==0.6.2 from https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 2021-07-13T10:34:41,454 Removed denovonear==0.6.2 from https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 from build tracker '/tmp/pip-req-tracker-9dzq3asw' 2021-07-13T10:34:41,459 Created temporary directory: /tmp/pip-unpack-4mgp_89r 2021-07-13T10:34:41,459 Building wheels for collected packages: denovonear 2021-07-13T10:34:41,463 Created temporary directory: /tmp/pip-wheel-4vh_9wa0 2021-07-13T10:34:41,464 Building wheel for denovonear (setup.py): started 2021-07-13T10:34:41,464 Destination directory: /tmp/pip-wheel-4vh_9wa0 2021-07-13T10:34:41,464 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e625shhc/denovonear_c20c652151ac44459b00aae6015d26d2/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-4vh_9wa0 2021-07-13T10:34:43,079 running bdist_wheel 2021-07-13T10:34:43,084 running build 2021-07-13T10:34:43,084 running build_py 2021-07-13T10:34:43,225 creating build 2021-07-13T10:34:43,225 creating build/lib.linux-armv7l-3.9 2021-07-13T10:34:43,226 creating build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,227 copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,230 copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,231 copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,233 copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,235 copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,237 copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,239 copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,241 copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,243 copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,246 copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,248 copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,251 creating build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,252 copying denovonear/gene_plot/diagram_plotter.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,255 copying denovonear/gene_plot/transcript.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,257 copying denovonear/gene_plot/__init__.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,259 copying denovonear/gene_plot/consequences.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,261 copying denovonear/gene_plot/interpro_parser.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,263 copying denovonear/gene_plot/domains.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,265 copying denovonear/gene_plot/genomic.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,268 copying denovonear/gene_plot/interpro_requestor.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:43,271 creating build/lib.linux-armv7l-3.9/denovonear/data 2021-07-13T10:34:43,272 copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data 2021-07-13T10:34:43,275 copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,280 running build_ext 2021-07-13T10:34:43,286 building 'denovonear.weights' extension 2021-07-13T10:34:43,287 creating build/temp.linux-armv7l-3.9 2021-07-13T10:34:43,287 creating build/temp.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,288 creating build/temp.linux-armv7l-3.9/src 2021-07-13T10:34:43,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11 2021-07-13T10:34:49,938 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11 2021-07-13T10:34:51,535 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-13T10:34:51,536 from /usr/include/c++/10/algorithm:62, 2021-07-13T10:34:51,536 from src/simulate.cpp:2: 2021-07-13T10:34:51,536 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T10:34:51,536 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,536 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-13T10:34:51,536 | ^~~~~~~~~~~~~ 2021-07-13T10:34:51,574 In file included from /usr/include/c++/10/algorithm:62, 2021-07-13T10:34:51,574 from src/simulate.cpp:2: 2021-07-13T10:34:51,574 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T10:34:51,574 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,574 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-13T10:34:51,575 | ^~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,575 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,575 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,619 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T10:34:51,619 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,619 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-13T10:34:51,619 | ^~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,619 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,620 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,621 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,621 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-13T10:34:51,621 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,841 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:34:51,842 from src/simulate.cpp:4: 2021-07-13T10:34:51,842 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:34:51,842 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:51,842 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:34:51,842 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,919 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector _simulate_distribution(Chooser&, int, int)’: 2021-07-13T10:34:51,919 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,919 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:34:51,919 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,920 In file included from /usr/include/c++/10/algorithm:62, 2021-07-13T10:34:51,920 from src/simulate.cpp:2: 2021-07-13T10:34:51,920 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,921 1974 | std::__introsort_loop(__first, __last, 2021-07-13T10:34:51,921 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,921 1975 | std::__lg(__last - __first) * 2, 2021-07-13T10:34:51,921 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,921 1976 | __comp); 2021-07-13T10:34:51,921 | ~~~~~~~ 2021-07-13T10:34:51,922 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,922 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-13T10:34:51,922 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,922 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,922 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-13T10:34:51,923 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:52,448 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-13T10:34:54,225 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:34:54,226 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,226 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,226 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,226 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:34:54,226 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,226 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:34:54,227 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,297 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:34:54,297 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,436 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:34:54,436 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,562 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:34:54,563 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,563 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,563 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,563 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-13T10:34:54,563 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,564 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:34:54,564 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:34:54,564 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:34:54,564 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,564 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,565 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,565 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,565 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:34:54,565 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,647 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:34:54,647 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,647 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:34:54,648 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,700 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-13T10:34:54,701 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,701 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:34:54,701 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,702 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:34:54,702 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,702 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,702 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,702 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,702 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:34:54,703 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:34:55,043 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so 2021-07-13T10:34:55,382 building 'denovonear.transcript' extension 2021-07-13T10:34:55,382 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11 2021-07-13T10:35:15,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-13T10:35:23,002 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so 2021-07-13T10:35:23,441 building 'denovonear.site_specific_rates' extension 2021-07-13T10:35:23,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11 2021-07-13T10:35:35,200 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11 2021-07-13T10:35:41,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-13T10:35:49,208 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-13T10:35:50,999 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:35:50,999 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:50,999 from /usr/include/c++/10/random:49, 2021-07-13T10:35:50,999 from src/weighted_choice.cpp:1: 2021-07-13T10:35:50,999 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:35:51,000 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,000 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:35:51,000 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,070 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:35:51,070 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,209 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:35:51,210 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,337 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:35:51,337 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:51,337 from /usr/include/c++/10/random:49, 2021-07-13T10:35:51,337 from src/weighted_choice.cpp:1: 2021-07-13T10:35:51,337 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-13T10:35:51,337 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,338 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:35:51,338 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:35:51,338 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:35:51,338 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:51,339 from /usr/include/c++/10/random:49, 2021-07-13T10:35:51,339 from src/weighted_choice.cpp:1: 2021-07-13T10:35:51,339 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,339 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:35:51,339 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,421 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:35:51,421 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,422 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:35:51,422 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,475 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-13T10:35:51,475 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,475 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:35:51,475 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,476 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:35:51,476 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:51,476 from /usr/include/c++/10/random:49, 2021-07-13T10:35:51,476 from src/weighted_choice.cpp:1: 2021-07-13T10:35:51,476 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,477 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:35:51,477 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:35:51,802 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so 2021-07-13T10:35:52,319 installing to build/bdist.linux-armv7l/wheel 2021-07-13T10:35:52,319 running install 2021-07-13T10:35:52,321 running install_lib 2021-07-13T10:35:52,324 creating build/bdist.linux-armv7l 2021-07-13T10:35:52,325 creating build/bdist.linux-armv7l/wheel 2021-07-13T10:35:52,327 creating build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,328 copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,330 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,332 copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,356 copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,359 creating build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-13T10:35:52,359 copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-13T10:35:52,362 copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,446 copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,448 copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,450 copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,452 copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,454 copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,457 copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,459 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,462 copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,525 creating build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,526 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/diagram_plotter.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,528 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/transcript.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,530 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,531 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/consequences.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,533 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_parser.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,535 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/domains.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,537 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/genomic.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,539 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_requestor.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,541 copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,544 copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,545 running install_egg_info 2021-07-13T10:35:52,599 running egg_info 2021-07-13T10:35:52,600 writing denovonear.egg-info/PKG-INFO 2021-07-13T10:35:52,602 writing dependency_links to denovonear.egg-info/dependency_links.txt 2021-07-13T10:35:52,603 writing entry points to denovonear.egg-info/entry_points.txt 2021-07-13T10:35:52,604 writing requirements to denovonear.egg-info/requires.txt 2021-07-13T10:35:52,605 writing top-level names to denovonear.egg-info/top_level.txt 2021-07-13T10:35:52,615 reading manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-13T10:35:52,621 reading manifest template 'MANIFEST.in' 2021-07-13T10:35:52,634 writing manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-13T10:35:52,636 Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.6.2-py3.9.egg-info 2021-07-13T10:35:52,649 running install_scripts 2021-07-13T10:35:52,698 creating build/bdist.linux-armv7l/wheel/denovonear-0.6.2.dist-info/WHEEL 2021-07-13T10:35:52,700 creating '/tmp/pip-wheel-4vh_9wa0/denovonear-0.6.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T10:35:52,703 adding 'denovonear/__init__.py' 2021-07-13T10:35:52,705 adding 'denovonear/__main__.py' 2021-07-13T10:35:52,706 adding 'denovonear/cluster_test.py' 2021-07-13T10:35:52,708 adding 'denovonear/ensembl_cache.py' 2021-07-13T10:35:52,710 adding 'denovonear/ensembl_requester.py' 2021-07-13T10:35:52,712 adding 'denovonear/frameshift_rate.py' 2021-07-13T10:35:52,713 adding 'denovonear/load_de_novos.py' 2021-07-13T10:35:52,715 adding 'denovonear/load_gene.py' 2021-07-13T10:35:52,716 adding 'denovonear/load_mutation_rates.py' 2021-07-13T10:35:52,717 adding 'denovonear/log_transform_rates.py' 2021-07-13T10:35:52,719 adding 'denovonear/simulate.py' 2021-07-13T10:35:53,243 adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T10:35:53,729 adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T10:35:53,940 adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T10:35:53,949 adding 'denovonear/weights.pxd' 2021-07-13T10:35:53,951 adding 'denovonear/data/rates.txt' 2021-07-13T10:35:53,954 adding 'denovonear/gene_plot/__init__.py' 2021-07-13T10:35:53,959 adding 'denovonear/gene_plot/consequences.py' 2021-07-13T10:35:53,963 adding 'denovonear/gene_plot/diagram_plotter.py' 2021-07-13T10:35:53,968 adding 'denovonear/gene_plot/domains.py' 2021-07-13T10:35:53,972 adding 'denovonear/gene_plot/genomic.py' 2021-07-13T10:35:53,975 adding 'denovonear/gene_plot/interpro_parser.py' 2021-07-13T10:35:53,977 adding 'denovonear/gene_plot/interpro_requestor.py' 2021-07-13T10:35:53,979 adding 'denovonear/gene_plot/transcript.py' 2021-07-13T10:35:53,982 adding 'denovonear-0.6.2.dist-info/METADATA' 2021-07-13T10:35:53,983 adding 'denovonear-0.6.2.dist-info/WHEEL' 2021-07-13T10:35:53,985 adding 'denovonear-0.6.2.dist-info/entry_points.txt' 2021-07-13T10:35:53,986 adding 'denovonear-0.6.2.dist-info/top_level.txt' 2021-07-13T10:35:53,987 adding 'denovonear-0.6.2.dist-info/RECORD' 2021-07-13T10:35:54,030 removing build/bdist.linux-armv7l/wheel 2021-07-13T10:35:54,152 Building wheel for denovonear (setup.py): finished with status 'done' 2021-07-13T10:35:54,182 Created wheel for denovonear: filename=denovonear-0.6.2-cp39-cp39-linux_armv7l.whl size=2237621 sha256=1c041d4d97c243355d7894fb5e164aa354ef201d3ec3a7f355667331dc88f6d3 2021-07-13T10:35:54,183 Stored in directory: /tmp/pip-ephem-wheel-cache-xf4h481d/wheels/5c/d2/71/78939e01b2fa02891d43d06c1078b63a5af7c9f6724816c2a2 2021-07-13T10:35:54,193 Successfully built denovonear 2021-07-13T10:35:54,265 Removed build tracker: '/tmp/pip-req-tracker-9dzq3asw'