2021-07-13T10:34:34,743 Created temporary directory: /tmp/pip-ephem-wheel-cache-qwjx97xx 2021-07-13T10:34:34,746 Created temporary directory: /tmp/pip-req-tracker-kywmiujp 2021-07-13T10:34:34,746 Initialized build tracking at /tmp/pip-req-tracker-kywmiujp 2021-07-13T10:34:34,746 Created build tracker: /tmp/pip-req-tracker-kywmiujp 2021-07-13T10:34:34,746 Entered build tracker: /tmp/pip-req-tracker-kywmiujp 2021-07-13T10:34:34,747 Created temporary directory: /tmp/pip-wheel-e6o3qn3z 2021-07-13T10:34:34,776 1 location(s) to search for versions of denovonear: 2021-07-13T10:34:34,776 * https://pypi.org/simple/denovonear/ 2021-07-13T10:34:34,777 Fetching project page and analyzing links: https://pypi.org/simple/denovonear/ 2021-07-13T10:34:34,777 Getting page https://pypi.org/simple/denovonear/ 2021-07-13T10:34:34,779 Found index url https://pypi.org/simple 2021-07-13T10:34:34,874 Found link https://files.pythonhosted.org/packages/5f/25/aa72bf3769052c8002b830283a8bbacb2cd6e1a2a22c12ee9859022fece0/denovonear-0.5.0.tar.gz#sha256=a321123c913a0bde2c209e574d064032a65007545c9fe8f49ec2f0ea64c91e94 (from https://pypi.org/simple/denovonear/), version: 0.5.0 2021-07-13T10:34:34,875 Found link https://files.pythonhosted.org/packages/0a/62/5608d43d65589a21a7f6b725ec78fcce289da0e725280b7d874f8ddbe3ad/denovonear-0.5.1.tar.gz#sha256=c3c7922d17f3f1b7173077428b0721fb4d0c45fcc242b7d75a2c766c0f9a1853 (from https://pypi.org/simple/denovonear/), version: 0.5.1 2021-07-13T10:34:34,875 Found link https://files.pythonhosted.org/packages/75/b3/535a16bff66cb3cb259afae1d4e1003258b4cb4af7bc81c7b2c76adc6ff2/denovonear-0.5.2.tar.gz#sha256=c949e557ddf9691e6b48f00208f6e37f5d4d249ee8089873c6775fe67d20f661 (from https://pypi.org/simple/denovonear/), version: 0.5.2 2021-07-13T10:34:34,875 Found link https://files.pythonhosted.org/packages/38/f3/215256488f842106a640294ec42b9fe1fe4f7a7e8748b7ff6ac0374a717e/denovonear-0.5.3.tar.gz#sha256=da55e20be91e97f9a1bd83be32284afd89923d54113b00b1fe9295cbcbf662bc (from https://pypi.org/simple/denovonear/), version: 0.5.3 2021-07-13T10:34:34,876 Found link https://files.pythonhosted.org/packages/0a/ec/c9f261454f065ec4284084deffa852884382211030834ea1d29a785892de/denovonear-0.5.4.tar.gz#sha256=fa9333c246d3db5abe98d79be6bd4eeb5354e45f08421bebf7fe4f8c30ff5649 (from https://pypi.org/simple/denovonear/), version: 0.5.4 2021-07-13T10:34:34,876 Found link https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 (from https://pypi.org/simple/denovonear/), version: 0.6.0 2021-07-13T10:34:34,876 Found link https://files.pythonhosted.org/packages/1a/59/a68dfe4f5ac02503d88d695f2e060b00125c319933b945545b74f27a6f4d/denovonear-0.6.2.tar.gz#sha256=0e23977dab1b5cc639dc74b0321d25a353e1f0a4e384afe067870c1cb5928d40 (from https://pypi.org/simple/denovonear/), version: 0.6.2 2021-07-13T10:34:34,877 Found link https://files.pythonhosted.org/packages/e0/86/ec2d7fde0f0afea70f6861078069556d45c844d5516dd51d339ed931bed5/denovonear-0.6.3.tar.gz#sha256=679732995cf26bd83452c2f5f90b4c72064c8c3c2410097e230406112c1e73fe (from https://pypi.org/simple/denovonear/), version: 0.6.3 2021-07-13T10:34:34,877 Found link https://files.pythonhosted.org/packages/d2/65/ec29b0b96fc99df3af00de418f640f0025da30a8adf6a1fad24684e2f127/denovonear-0.6.4.tar.gz#sha256=2b71b65aea39556c16f37ff983c88e09c566317c37653a64aeadceb924a48949 (from https://pypi.org/simple/denovonear/), version: 0.6.4 2021-07-13T10:34:34,877 Found link https://files.pythonhosted.org/packages/f4/74/2b095897dc12359e79c4a0c4e31bf703c91d3022a411644d939c31c4723d/denovonear-0.7.0.tar.gz#sha256=39dffd0001805eb6bb57cda051cba82da8b198ffd297b7eb8588913fd453e5d7 (from https://pypi.org/simple/denovonear/), version: 0.7.0 2021-07-13T10:34:34,878 Found link https://files.pythonhosted.org/packages/1d/da/7e29323a5caad1d27247d9c08e4f98ef9f6332afae998c7750f72ad07306/denovonear-0.8.0.tar.gz#sha256=879ee5e01c08ecacc4dd6defd235c61f886cea453b110cd601aa3b84e9553b9d (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.0 2021-07-13T10:34:34,878 Found link https://files.pythonhosted.org/packages/c4/17/06377d6ebd931ec0d1bcd7b2c0df67da483d90cc59503a4fe5c163cd6c14/denovonear-0.8.1.tar.gz#sha256=01a1fffa94a35b39e77ecafac6263d4a7a11f3ace453699e00c0761d6708e576 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.1 2021-07-13T10:34:34,879 Found link https://files.pythonhosted.org/packages/ef/b4/e860d4a4ead9864f588d6a02e1d5f5f4faa83f7c90991c5665d0161cbd55/denovonear-0.8.2.tar.gz#sha256=9ad038ee99c90af080e3fe968015ab78f9d869474b65ec95dedcf63cdee8b05f (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.2 2021-07-13T10:34:34,879 Found link https://files.pythonhosted.org/packages/a8/fb/8601613cae1e1165ca87dd3f39442ae6f72768d1854cf05fc91fe54c74e3/denovonear-0.8.4.tar.gz#sha256=f725d7598a6470a5bff613253d1b7ebdf844c0ce592dfe31015e38e530e90be1 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.4 2021-07-13T10:34:34,880 Found link https://files.pythonhosted.org/packages/5e/40/6235d5a69a1954d94ffd5fe8db17ae0825866255cc69b8caf3057df33ec3/denovonear-0.8.5.tar.gz#sha256=dd656b8b43f511e26e701f7301b39f8c151893aab015f1f581ddc0a9a2ae5c13 (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.5 2021-07-13T10:34:34,881 Found link https://files.pythonhosted.org/packages/51/a0/1e7699fe5b5a6ab27d2916c14ff76000d8026f85a668b1b50c7b51cdf187/denovonear-0.8.6.tar.gz#sha256=3241bfa633f723687359aa8928e7a68a82d2ffaac6eb6ce090401d9c6357fa2e (from https://pypi.org/simple/denovonear/) (requires-python:>=3.6), version: 0.8.6 2021-07-13T10:34:34,881 Skipping link: not a file: https://pypi.org/simple/denovonear/ 2021-07-13T10:34:34,901 Given no hashes to check 1 links for project 'denovonear': discarding no candidates 2021-07-13T10:34:34,920 Collecting denovonear==0.6.0 2021-07-13T10:34:34,921 Created temporary directory: /tmp/pip-unpack-_ztnk8_4 2021-07-13T10:34:35,136 Downloading denovonear-0.6.0.tar.gz (215 kB) 2021-07-13T10:34:35,380 Added denovonear==0.6.0 from https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 to build tracker '/tmp/pip-req-tracker-kywmiujp' 2021-07-13T10:34:35,381 Running setup.py (path:/tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a/setup.py) egg_info for package denovonear 2021-07-13T10:34:35,381 Created temporary directory: /tmp/pip-pip-egg-info-b0z7ezr3 2021-07-13T10:34:35,382 Running command python setup.py egg_info 2021-07-13T10:34:37,220 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a/denovonear/site_specific_rates.pyx 2021-07-13T10:34:37,221 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T10:34:38,032 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a/denovonear/weights.pxd 2021-07-13T10:34:38,032 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T10:34:38,763 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a/denovonear/transcript.pxd 2021-07-13T10:34:38,764 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T10:34:40,287 Compiling denovonear/weights.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T10:34:40,288 Compiling denovonear/transcript.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T10:34:40,288 Compiling denovonear/site_specific_rates.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-13T10:34:40,288 [1/3] Cythonizing denovonear/site_specific_rates.pyx 2021-07-13T10:34:40,288 [2/3] Cythonizing denovonear/weights.pyx 2021-07-13T10:34:40,288 [3/3] Cythonizing denovonear/transcript.pyx 2021-07-13T10:34:40,478 running egg_info 2021-07-13T10:34:40,480 creating /tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info 2021-07-13T10:34:40,482 writing /tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/PKG-INFO 2021-07-13T10:34:40,485 writing dependency_links to /tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/dependency_links.txt 2021-07-13T10:34:40,486 writing entry points to /tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/entry_points.txt 2021-07-13T10:34:40,488 writing requirements to /tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/requires.txt 2021-07-13T10:34:40,489 writing top-level names to /tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/top_level.txt 2021-07-13T10:34:40,491 writing manifest file '/tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/SOURCES.txt' 2021-07-13T10:34:40,679 reading manifest file '/tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/SOURCES.txt' 2021-07-13T10:34:40,682 reading manifest template 'MANIFEST.in' 2021-07-13T10:34:40,698 writing manifest file '/tmp/pip-pip-egg-info-b0z7ezr3/denovonear.egg-info/SOURCES.txt' 2021-07-13T10:34:40,900 Source in /tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a has version 0.6.0, which satisfies requirement denovonear==0.6.0 from https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 2021-07-13T10:34:40,901 Removed denovonear==0.6.0 from https://files.pythonhosted.org/packages/5f/6f/d9869072c8823a143f8022acdc017b8d726fe74b50f7ae5cca233c4e879c/denovonear-0.6.0.tar.gz#sha256=d5b8baa3eac2c0c9b5bfa3337071e527fe10ce17d38c38f39aa5fe0f5b8d9a68 from build tracker '/tmp/pip-req-tracker-kywmiujp' 2021-07-13T10:34:40,906 Created temporary directory: /tmp/pip-unpack-8sq0b0k1 2021-07-13T10:34:40,906 Building wheels for collected packages: denovonear 2021-07-13T10:34:40,910 Created temporary directory: /tmp/pip-wheel-pl9bye4c 2021-07-13T10:34:40,911 Building wheel for denovonear (setup.py): started 2021-07-13T10:34:40,911 Destination directory: /tmp/pip-wheel-pl9bye4c 2021-07-13T10:34:40,911 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-e6o3qn3z/denovonear_f0707cad30884340b45b219be861475a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pl9bye4c 2021-07-13T10:34:42,750 running bdist_wheel 2021-07-13T10:34:42,756 running build 2021-07-13T10:34:42,756 running build_py 2021-07-13T10:34:42,935 creating build 2021-07-13T10:34:42,935 creating build/lib.linux-armv7l-3.9 2021-07-13T10:34:42,937 creating build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,939 copying denovonear/simulate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,941 copying denovonear/ensembl_cache.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,944 copying denovonear/cluster_test.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,947 copying denovonear/load_gene.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,951 copying denovonear/log_transform_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,953 copying denovonear/load_de_novos.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,956 copying denovonear/__main__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,959 copying denovonear/load_mutation_rates.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,961 copying denovonear/ensembl_requester.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,964 copying denovonear/frameshift_rate.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,966 copying denovonear/__init__.py -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,968 creating build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,969 copying denovonear/gene_plot/domains.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,972 copying denovonear/gene_plot/interpro_parser.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,974 copying denovonear/gene_plot/diagram_plotter.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,977 copying denovonear/gene_plot/interpro_requestor.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,979 copying denovonear/gene_plot/consequences.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,982 copying denovonear/gene_plot/genomic.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,984 copying denovonear/gene_plot/transcript.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,986 copying denovonear/gene_plot/__init__.py -> build/lib.linux-armv7l-3.9/denovonear/gene_plot 2021-07-13T10:34:42,988 creating build/lib.linux-armv7l-3.9/denovonear/data 2021-07-13T10:34:42,989 copying denovonear/data/rates.txt -> build/lib.linux-armv7l-3.9/denovonear/data 2021-07-13T10:34:42,992 copying denovonear/weights.pxd -> build/lib.linux-armv7l-3.9/denovonear 2021-07-13T10:34:42,996 running build_ext 2021-07-13T10:34:43,002 building 'denovonear.weights' extension 2021-07-13T10:34:43,003 creating build/temp.linux-armv7l-3.9 2021-07-13T10:34:43,004 creating build/temp.linux-armv7l-3.9/denovonear 2021-07-13T10:34:43,005 creating build/temp.linux-armv7l-3.9/src 2021-07-13T10:34:43,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/weights.cpp -o build/temp.linux-armv7l-3.9/denovonear/weights.o -std=c++11 2021-07-13T10:34:49,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/simulate.cpp -o build/temp.linux-armv7l-3.9/src/simulate.o -std=c++11 2021-07-13T10:34:51,290 In file included from /usr/include/c++/10/bits/stl_algo.h:61, 2021-07-13T10:34:51,290 from /usr/include/c++/10/algorithm:62, 2021-07-13T10:34:51,291 from src/simulate.cpp:2: 2021-07-13T10:34:51,291 /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T10:34:51,291 /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,291 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2021-07-13T10:34:51,291 | ^~~~~~~~~~~~~ 2021-07-13T10:34:51,327 In file included from /usr/include/c++/10/algorithm:62, 2021-07-13T10:34:51,328 from src/simulate.cpp:2: 2021-07-13T10:34:51,328 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T10:34:51,328 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,328 1839 | __insertion_sort(_RandomAccessIterator __first, 2021-07-13T10:34:51,328 | ^~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,328 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,329 /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,371 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2021-07-13T10:34:51,371 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,371 1945 | __introsort_loop(_RandomAccessIterator __first, 2021-07-13T10:34:51,371 | ^~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,371 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,372 /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,372 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,372 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2021-07-13T10:34:51,372 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,592 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:34:51,592 from src/simulate.cpp:4: 2021-07-13T10:34:51,592 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:34:51,593 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:51,593 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:34:51,593 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,668 /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector _simulate_distribution(Chooser&, int, int)’: 2021-07-13T10:34:51,668 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,669 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:34:51,669 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,669 In file included from /usr/include/c++/10/algorithm:62, 2021-07-13T10:34:51,669 from src/simulate.cpp:2: 2021-07-13T10:34:51,669 /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,669 1974 | std::__introsort_loop(__first, __last, 2021-07-13T10:34:51,669 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,670 1975 | std::__lg(__last - __first) * 2, 2021-07-13T10:34:51,670 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,670 1976 | __comp); 2021-07-13T10:34:51,670 | ~~~~~~~ 2021-07-13T10:34:51,670 /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,670 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2021-07-13T10:34:51,670 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:51,670 /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:51,670 1891 | std::__insertion_sort(__first, __last, __comp); 2021-07-13T10:34:51,671 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:52,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-13T10:34:53,984 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:34:53,984 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:53,984 from /usr/include/c++/10/random:49, 2021-07-13T10:34:53,984 from src/weighted_choice.cpp:1: 2021-07-13T10:34:53,984 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:34:53,985 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:53,985 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:34:53,985 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,055 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:34:54,055 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,194 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:34:54,194 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,321 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:34:54,321 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,321 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,321 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,321 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-13T10:34:54,322 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,322 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:34:54,322 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:34:54,322 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:34:54,323 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,323 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,323 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,323 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,323 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:34:54,323 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,406 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:34:54,406 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:34:54,406 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:34:54,407 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,459 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-13T10:34:54,460 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,460 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:34:54,460 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:34:54,461 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:34:54,461 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:34:54,461 from /usr/include/c++/10/random:49, 2021-07-13T10:34:54,461 from src/weighted_choice.cpp:1: 2021-07-13T10:34:54,461 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:34:54,461 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:34:54,461 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:34:54,794 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/weights.o build/temp.linux-armv7l-3.9/src/simulate.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so 2021-07-13T10:34:55,155 building 'denovonear.transcript' extension 2021-07-13T10:34:55,155 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/transcript.cpp -o build/temp.linux-armv7l-3.9/denovonear/transcript.o -std=c++11 2021-07-13T10:35:15,091 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-13T10:35:22,988 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/transcript.o build/temp.linux-armv7l-3.9/src/tx.o -o build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so 2021-07-13T10:35:23,424 building 'denovonear.site_specific_rates' extension 2021-07-13T10:35:23,425 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c denovonear/site_specific_rates.cpp -o build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o -std=c++11 2021-07-13T10:35:35,178 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/site_rates.cpp -o build/temp.linux-armv7l-3.9/src/site_rates.o -std=c++11 2021-07-13T10:35:41,301 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/tx.cpp -o build/temp.linux-armv7l-3.9/src/tx.o -std=c++11 2021-07-13T10:35:49,157 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c src/weighted_choice.cpp -o build/temp.linux-armv7l-3.9/src/weighted_choice.o -std=c++11 2021-07-13T10:35:50,939 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:35:50,939 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:50,939 from /usr/include/c++/10/random:49, 2021-07-13T10:35:50,939 from src/weighted_choice.cpp:1: 2021-07-13T10:35:50,940 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:35:50,940 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:50,940 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:35:50,940 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,010 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const AlleleChoice&}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:35:51,010 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,148 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {AlleleChoice}; _Tp = AlleleChoice; _Alloc = std::allocator]’: 2021-07-13T10:35:51,149 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,275 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:35:51,275 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:51,275 from /usr/include/c++/10/random:49, 2021-07-13T10:35:51,276 from src/weighted_choice.cpp:1: 2021-07-13T10:35:51,276 /usr/include/c++/10/bits/stl_vector.h: In member function ‘void Chooser::add_choice(int, double, std::string, std::string, int)’: 2021-07-13T10:35:51,276 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,276 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:35:51,276 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:35:51,277 In file included from /usr/include/c++/10/vector:72, 2021-07-13T10:35:51,277 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:51,277 from /usr/include/c++/10/random:49, 2021-07-13T10:35:51,277 from src/weighted_choice.cpp:1: 2021-07-13T10:35:51,277 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,277 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:35:51,277 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,359 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2021-07-13T10:35:51,360 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2021-07-13T10:35:51,360 426 | vector<_Tp, _Alloc>:: 2021-07-13T10:35:51,360 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,413 /usr/include/c++/10/bits/vector.tcc: In member function ‘void Chooser::append(Chooser)’: 2021-07-13T10:35:51,413 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,413 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2021-07-13T10:35:51,413 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T10:35:51,414 In file included from /usr/include/c++/10/vector:67, 2021-07-13T10:35:51,414 from /usr/include/c++/10/bits/random.h:34, 2021-07-13T10:35:51,414 from /usr/include/c++/10/random:49, 2021-07-13T10:35:51,414 from src/weighted_choice.cpp:1: 2021-07-13T10:35:51,415 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2021-07-13T10:35:51,415 1198 | _M_realloc_insert(end(), __x); 2021-07-13T10:35:51,415 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-13T10:35:51,744 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/denovonear/site_specific_rates.o build/temp.linux-armv7l-3.9/src/site_rates.o build/temp.linux-armv7l-3.9/src/tx.o build/temp.linux-armv7l-3.9/src/weighted_choice.o -o build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so 2021-07-13T10:35:52,260 installing to build/bdist.linux-armv7l/wheel 2021-07-13T10:35:52,261 running install 2021-07-13T10:35:52,262 running install_lib 2021-07-13T10:35:52,267 creating build/bdist.linux-armv7l 2021-07-13T10:35:52,268 creating build/bdist.linux-armv7l/wheel 2021-07-13T10:35:52,270 creating build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,271 copying build/lib.linux-armv7l-3.9/denovonear/simulate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,274 copying build/lib.linux-armv7l-3.9/denovonear/transcript.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,333 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_cache.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,336 creating build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,337 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/domains.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,339 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_parser.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,342 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/diagram_plotter.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,345 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/interpro_requestor.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,347 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/consequences.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,351 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/genomic.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,353 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/transcript.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,356 copying build/lib.linux-armv7l-3.9/denovonear/gene_plot/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear/gene_plot 2021-07-13T10:35:52,358 copying build/lib.linux-armv7l-3.9/denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,444 copying build/lib.linux-armv7l-3.9/denovonear/cluster_test.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,446 copying build/lib.linux-armv7l-3.9/denovonear/load_gene.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,448 copying build/lib.linux-armv7l-3.9/denovonear/log_transform_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,450 copying build/lib.linux-armv7l-3.9/denovonear/weights.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,478 copying build/lib.linux-armv7l-3.9/denovonear/load_de_novos.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,480 copying build/lib.linux-armv7l-3.9/denovonear/__main__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,483 creating build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-13T10:35:52,484 copying build/lib.linux-armv7l-3.9/denovonear/data/rates.txt -> build/bdist.linux-armv7l/wheel/denovonear/data 2021-07-13T10:35:52,486 copying build/lib.linux-armv7l-3.9/denovonear/load_mutation_rates.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,488 copying build/lib.linux-armv7l-3.9/denovonear/ensembl_requester.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,491 copying build/lib.linux-armv7l-3.9/denovonear/weights.pxd -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,493 copying build/lib.linux-armv7l-3.9/denovonear/frameshift_rate.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,495 copying build/lib.linux-armv7l-3.9/denovonear/__init__.py -> build/bdist.linux-armv7l/wheel/denovonear 2021-07-13T10:35:52,497 running install_egg_info 2021-07-13T10:35:52,525 running egg_info 2021-07-13T10:35:52,526 writing denovonear.egg-info/PKG-INFO 2021-07-13T10:35:52,528 writing dependency_links to denovonear.egg-info/dependency_links.txt 2021-07-13T10:35:52,529 writing entry points to denovonear.egg-info/entry_points.txt 2021-07-13T10:35:52,530 writing requirements to denovonear.egg-info/requires.txt 2021-07-13T10:35:52,532 writing top-level names to denovonear.egg-info/top_level.txt 2021-07-13T10:35:52,571 reading manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-13T10:35:52,579 reading manifest template 'MANIFEST.in' 2021-07-13T10:35:52,595 writing manifest file 'denovonear.egg-info/SOURCES.txt' 2021-07-13T10:35:52,596 Copying denovonear.egg-info to build/bdist.linux-armv7l/wheel/denovonear-0.6.0-py3.9.egg-info 2021-07-13T10:35:52,611 running install_scripts 2021-07-13T10:35:52,661 creating build/bdist.linux-armv7l/wheel/denovonear-0.6.0.dist-info/WHEEL 2021-07-13T10:35:52,665 creating '/tmp/pip-wheel-pl9bye4c/denovonear-0.6.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T10:35:52,667 adding 'denovonear/__init__.py' 2021-07-13T10:35:52,669 adding 'denovonear/__main__.py' 2021-07-13T10:35:52,671 adding 'denovonear/cluster_test.py' 2021-07-13T10:35:52,673 adding 'denovonear/ensembl_cache.py' 2021-07-13T10:35:52,675 adding 'denovonear/ensembl_requester.py' 2021-07-13T10:35:52,677 adding 'denovonear/frameshift_rate.py' 2021-07-13T10:35:52,678 adding 'denovonear/load_de_novos.py' 2021-07-13T10:35:52,680 adding 'denovonear/load_gene.py' 2021-07-13T10:35:52,682 adding 'denovonear/load_mutation_rates.py' 2021-07-13T10:35:52,683 adding 'denovonear/log_transform_rates.py' 2021-07-13T10:35:52,684 adding 'denovonear/simulate.py' 2021-07-13T10:35:53,209 adding 'denovonear/site_specific_rates.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T10:35:53,697 adding 'denovonear/transcript.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T10:35:53,908 adding 'denovonear/weights.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T10:35:53,917 adding 'denovonear/weights.pxd' 2021-07-13T10:35:53,919 adding 'denovonear/data/rates.txt' 2021-07-13T10:35:53,921 adding 'denovonear/gene_plot/__init__.py' 2021-07-13T10:35:53,922 adding 'denovonear/gene_plot/consequences.py' 2021-07-13T10:35:53,924 adding 'denovonear/gene_plot/diagram_plotter.py' 2021-07-13T10:35:53,925 adding 'denovonear/gene_plot/domains.py' 2021-07-13T10:35:53,927 adding 'denovonear/gene_plot/genomic.py' 2021-07-13T10:35:53,928 adding 'denovonear/gene_plot/interpro_parser.py' 2021-07-13T10:35:53,930 adding 'denovonear/gene_plot/interpro_requestor.py' 2021-07-13T10:35:53,931 adding 'denovonear/gene_plot/transcript.py' 2021-07-13T10:35:53,934 adding 'denovonear-0.6.0.dist-info/METADATA' 2021-07-13T10:35:53,935 adding 'denovonear-0.6.0.dist-info/WHEEL' 2021-07-13T10:35:53,936 adding 'denovonear-0.6.0.dist-info/entry_points.txt' 2021-07-13T10:35:53,937 adding 'denovonear-0.6.0.dist-info/top_level.txt' 2021-07-13T10:35:53,938 adding 'denovonear-0.6.0.dist-info/RECORD' 2021-07-13T10:35:53,975 removing build/bdist.linux-armv7l/wheel 2021-07-13T10:35:54,103 Building wheel for denovonear (setup.py): finished with status 'done' 2021-07-13T10:35:54,139 Created wheel for denovonear: filename=denovonear-0.6.0-cp39-cp39-linux_armv7l.whl size=2237657 sha256=b3c386c9a291cb1cf2583c7dee4fb46372897f9b5c2203682836f3ffe113d4cb 2021-07-13T10:35:54,139 Stored in directory: /tmp/pip-ephem-wheel-cache-qwjx97xx/wheels/f1/80/96/1994f1e9500fdf5339e0b1b726d557fedd3cd14acd9eabfe5d 2021-07-13T10:35:54,150 Successfully built denovonear 2021-07-13T10:35:54,237 Removed build tracker: '/tmp/pip-req-tracker-kywmiujp'