2021-07-13T10:38:08,910 Created temporary directory: /tmp/pip-ephem-wheel-cache-c7ol0j6i
2021-07-13T10:38:08,913 Created temporary directory: /tmp/pip-req-tracker-msjr44n2
2021-07-13T10:38:08,913 Initialized build tracking at /tmp/pip-req-tracker-msjr44n2
2021-07-13T10:38:08,914 Created build tracker: /tmp/pip-req-tracker-msjr44n2
2021-07-13T10:38:08,914 Entered build tracker: /tmp/pip-req-tracker-msjr44n2
2021-07-13T10:38:08,914 Created temporary directory: /tmp/pip-wheel-uu758rw5
2021-07-13T10:38:08,943 1 location(s) to search for versions of tetoolkit:
2021-07-13T10:38:08,943 * https://pypi.org/simple/tetoolkit/
2021-07-13T10:38:08,943 Fetching project page and analyzing links: https://pypi.org/simple/tetoolkit/
2021-07-13T10:38:08,944 Getting page https://pypi.org/simple/tetoolkit/
2021-07-13T10:38:08,946 Found index url https://pypi.org/simple
2021-07-13T10:38:09,136   Found link https://files.pythonhosted.org/packages/36/8f/0ebbeaf8dc547e108660cf1ff8ae0d8735b1e92dec1df7d6b87f31dbaad5/TEToolkit-1.4.11.tar.gz#sha256=89e5b295f5573ea8e507df6ae3f36521560ce698d2f9e5363622ac38950d8cb4 (from https://pypi.org/simple/tetoolkit/), version: 1.4.11
2021-07-13T10:38:09,137   Found link https://files.pythonhosted.org/packages/6d/a7/3124624726ec038725cf4742cf02196937a551a58123e072b6daa9cc28de/TEToolkit-1.5.0.tar.gz#sha256=fdcf1aec00f84ab487456df949bd7e85d5379d947323e2b8ba40de09c4434fa8 (from https://pypi.org/simple/tetoolkit/), version: 1.5.0
2021-07-13T10:38:09,137   Found link https://files.pythonhosted.org/packages/3c/a2/b8fc869e59439d3f7523adb6d0caf4ba0f58b002ec72148518dc927042d0/TEToolkit-1.5.1.tar.gz#sha256=22c13ca45bccc89e9d9bf48d59ae6db1fa4c634def64fc56ba9bffd23aa689ac (from https://pypi.org/simple/tetoolkit/), version: 1.5.1
2021-07-13T10:38:09,137   Found link https://files.pythonhosted.org/packages/c9/37/1472047b4855b7ec481fa6b489143c6baebe952f19b8eded1f21b652fddc/TEToolkit-2.0.0.tar.gz#sha256=d568f4ca906beccc530d802a9129180949a6e174d33cb81ad98d0534e131c1b1 (from https://pypi.org/simple/tetoolkit/), version: 2.0.0
2021-07-13T10:38:09,137   Found link https://files.pythonhosted.org/packages/ad/8f/c3c458788ed3d37bb7d78e7e5ae665d77223a211303b136bd040dd8ea91f/TEToolkit-2.0.1.tar.gz#sha256=ccc01b85a83a51efe2c830803d33227508e8bd12dc608fbfdbc85548525e4782 (from https://pypi.org/simple/tetoolkit/), version: 2.0.1
2021-07-13T10:38:09,138   Found link https://files.pythonhosted.org/packages/c7/a8/11dcbb017659c63cd46730b9237a58e8630955c1435c284306e3271634ca/TEToolkit-2.0.2.tar.gz#sha256=3bc9f6b202169d6d7fb3b08793c8465d6243651bca6542dd4ec42fd8bd65f483 (from https://pypi.org/simple/tetoolkit/), version: 2.0.2
2021-07-13T10:38:09,138   Found link https://files.pythonhosted.org/packages/86/01/5e4de6185a765e5507cf5ba35d49a0877d4321850fe69557842432644097/TEToolkit-2.0.3.tar.gz#sha256=1d0f5928b30c6cd9dbef8e092ae0c11e9e707faf92a19af8eed3e360da7d4e46 (from https://pypi.org/simple/tetoolkit/), version: 2.0.3
2021-07-13T10:38:09,138 Skipping link: not a file: https://pypi.org/simple/tetoolkit/
2021-07-13T10:38:09,156 Given no hashes to check 1 links for project 'tetoolkit': discarding no candidates
2021-07-13T10:38:09,175 Collecting tetoolkit==2.0.0
2021-07-13T10:38:09,177   Created temporary directory: /tmp/pip-unpack-wa4fdlu2
2021-07-13T10:38:09,218   Downloading TEToolkit-2.0.0.tar.gz (84 kB)
2021-07-13T10:38:09,329   Added tetoolkit==2.0.0 from https://files.pythonhosted.org/packages/c9/37/1472047b4855b7ec481fa6b489143c6baebe952f19b8eded1f21b652fddc/TEToolkit-2.0.0.tar.gz#sha256=d568f4ca906beccc530d802a9129180949a6e174d33cb81ad98d0534e131c1b1 to build tracker '/tmp/pip-req-tracker-msjr44n2'
2021-07-13T10:38:09,330     Running setup.py (path:/tmp/pip-wheel-uu758rw5/tetoolkit_90d544663934441c8ffa60d87b2f5320/setup.py) egg_info for package tetoolkit
2021-07-13T10:38:09,331     Created temporary directory: /tmp/pip-pip-egg-info-rs97k_w5
2021-07-13T10:38:09,331     Running command python setup.py egg_info
2021-07-13T10:38:10,193     running egg_info
2021-07-13T10:38:10,195     creating /tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info
2021-07-13T10:38:10,196     writing /tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/PKG-INFO
2021-07-13T10:38:10,199     writing dependency_links to /tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/dependency_links.txt
2021-07-13T10:38:10,201     writing requirements to /tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/requires.txt
2021-07-13T10:38:10,202     writing top-level names to /tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/top_level.txt
2021-07-13T10:38:10,204     writing manifest file '/tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/SOURCES.txt'
2021-07-13T10:38:10,360     reading manifest file '/tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/SOURCES.txt'
2021-07-13T10:38:10,362     reading manifest template 'MANIFEST.in'
2021-07-13T10:38:10,364     adding license file 'COPYING'
2021-07-13T10:38:10,366     writing manifest file '/tmp/pip-pip-egg-info-rs97k_w5/TEToolkit.egg-info/SOURCES.txt'
2021-07-13T10:38:10,430   Source in /tmp/pip-wheel-uu758rw5/tetoolkit_90d544663934441c8ffa60d87b2f5320 has version 2.0.0, which satisfies requirement tetoolkit==2.0.0 from https://files.pythonhosted.org/packages/c9/37/1472047b4855b7ec481fa6b489143c6baebe952f19b8eded1f21b652fddc/TEToolkit-2.0.0.tar.gz#sha256=d568f4ca906beccc530d802a9129180949a6e174d33cb81ad98d0534e131c1b1
2021-07-13T10:38:10,431   Removed tetoolkit==2.0.0 from https://files.pythonhosted.org/packages/c9/37/1472047b4855b7ec481fa6b489143c6baebe952f19b8eded1f21b652fddc/TEToolkit-2.0.0.tar.gz#sha256=d568f4ca906beccc530d802a9129180949a6e174d33cb81ad98d0534e131c1b1 from build tracker '/tmp/pip-req-tracker-msjr44n2'
2021-07-13T10:38:10,436 Created temporary directory: /tmp/pip-unpack-0jb6nkvf
2021-07-13T10:38:10,437 Building wheels for collected packages: tetoolkit
2021-07-13T10:38:10,441   Created temporary directory: /tmp/pip-wheel-ro1vz518
2021-07-13T10:38:10,441   Building wheel for tetoolkit (setup.py): started
2021-07-13T10:38:10,442   Destination directory: /tmp/pip-wheel-ro1vz518
2021-07-13T10:38:10,442   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uu758rw5/tetoolkit_90d544663934441c8ffa60d87b2f5320/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uu758rw5/tetoolkit_90d544663934441c8ffa60d87b2f5320/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ro1vz518
2021-07-13T10:38:11,325   running bdist_wheel
2021-07-13T10:38:11,497   running build
2021-07-13T10:38:11,497   running build_py
2021-07-13T10:38:11,638   creating build
2021-07-13T10:38:11,638   creating build/lib
2021-07-13T10:38:11,639   creating build/lib/TEToolkit
2021-07-13T10:38:11,640   copying TEToolkit/Common.py -> build/lib/TEToolkit
2021-07-13T10:38:11,642   copying TEToolkit/EMAlgorithm.py -> build/lib/TEToolkit
2021-07-13T10:38:11,644   copying TEToolkit/Normalization.py -> build/lib/TEToolkit
2021-07-13T10:38:11,646   copying TEToolkit/Constants.py -> build/lib/TEToolkit
2021-07-13T10:38:11,648   copying TEToolkit/TEindex.py -> build/lib/TEToolkit
2021-07-13T10:38:11,651   copying TEToolkit/__init__.py -> build/lib/TEToolkit
2021-07-13T10:38:11,652   copying TEToolkit/Prob.py -> build/lib/TEToolkit
2021-07-13T10:38:11,655   copying TEToolkit/IntervalTree.py -> build/lib/TEToolkit
2021-07-13T10:38:11,657   copying TEToolkit/GeneFeatures.py -> build/lib/TEToolkit
2021-07-13T10:38:11,660   creating build/lib/TEToolkit/IO
2021-07-13T10:38:11,661   copying TEToolkit/IO/FeatIO.py -> build/lib/TEToolkit/IO
2021-07-13T10:38:11,664   copying TEToolkit/IO/ReadInputs.py -> build/lib/TEToolkit/IO
2021-07-13T10:38:11,667   copying TEToolkit/IO/__init__.py -> build/lib/TEToolkit/IO
2021-07-13T10:38:11,669   creating build/lib/TEToolkit/ShortRead
2021-07-13T10:38:11,670   copying TEToolkit/ShortRead/__init__.py -> build/lib/TEToolkit/ShortRead
2021-07-13T10:38:11,672   copying TEToolkit/ShortRead/ParseBEDFile.py -> build/lib/TEToolkit/ShortRead
2021-07-13T10:38:11,675   running egg_info
2021-07-13T10:38:11,691   writing TEToolkit.egg-info/PKG-INFO
2021-07-13T10:38:11,693   writing dependency_links to TEToolkit.egg-info/dependency_links.txt
2021-07-13T10:38:11,695   writing requirements to TEToolkit.egg-info/requires.txt
2021-07-13T10:38:11,696   writing top-level names to TEToolkit.egg-info/top_level.txt
2021-07-13T10:38:11,702   reading manifest file 'TEToolkit.egg-info/SOURCES.txt'
2021-07-13T10:38:11,704   reading manifest template 'MANIFEST.in'
2021-07-13T10:38:11,706   adding license file 'COPYING'
2021-07-13T10:38:11,709   writing manifest file 'TEToolkit.egg-info/SOURCES.txt'
2021-07-13T10:38:11,712   copying TEToolkit/IO/FeatIO.pyc -> build/lib/TEToolkit/IO
2021-07-13T10:38:11,715   copying TEToolkit/IO/ReadInputs.pyc -> build/lib/TEToolkit/IO
2021-07-13T10:38:11,717   copying TEToolkit/IO/__init__.pyc -> build/lib/TEToolkit/IO
2021-07-13T10:38:11,720   copying TEToolkit/ShortRead/ParseBEDFile.pyc -> build/lib/TEToolkit/ShortRead
2021-07-13T10:38:11,723   copying TEToolkit/ShortRead/__init__.pyc -> build/lib/TEToolkit/ShortRead
2021-07-13T10:38:11,727   running build_scripts
2021-07-13T10:38:11,727   creating build/scripts-3.9
2021-07-13T10:38:11,728   error: [Errno 2] No such file or directory: 'bin/TEtranscriptsbin/TEcount'
2021-07-13T10:38:11,802   Building wheel for tetoolkit (setup.py): finished with status 'error'
2021-07-13T10:38:11,802   ERROR: Failed building wheel for tetoolkit
2021-07-13T10:38:11,803   Running setup.py clean for tetoolkit
2021-07-13T10:38:11,803   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-uu758rw5/tetoolkit_90d544663934441c8ffa60d87b2f5320/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-uu758rw5/tetoolkit_90d544663934441c8ffa60d87b2f5320/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-13T10:38:12,650   running clean
2021-07-13T10:38:12,652   removing 'build/lib' (and everything under it)
2021-07-13T10:38:12,660   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-13T10:38:12,660   removing 'build/scripts-3.9' (and everything under it)
2021-07-13T10:38:12,661   removing 'build'
2021-07-13T10:38:12,716 Failed to build tetoolkit
2021-07-13T10:38:12,717 ERROR: Failed to build one or more wheels
2021-07-13T10:38:12,718 Exception information:
2021-07-13T10:38:12,718 Traceback (most recent call last):
2021-07-13T10:38:12,718   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-13T10:38:12,718     status = self.run(options, args)
2021-07-13T10:38:12,718   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-13T10:38:12,718     return func(self, options, args)
2021-07-13T10:38:12,718   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-13T10:38:12,718     raise CommandError(
2021-07-13T10:38:12,718 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-13T10:38:12,720 Removed build tracker: '/tmp/pip-req-tracker-msjr44n2'