2021-07-13T12:28:22,667 Created temporary directory: /tmp/pip-ephem-wheel-cache-bjx_l816 2021-07-13T12:28:22,670 Created temporary directory: /tmp/pip-req-tracker-nuynhrcy 2021-07-13T12:28:22,670 Initialized build tracking at /tmp/pip-req-tracker-nuynhrcy 2021-07-13T12:28:22,670 Created build tracker: /tmp/pip-req-tracker-nuynhrcy 2021-07-13T12:28:22,671 Entered build tracker: /tmp/pip-req-tracker-nuynhrcy 2021-07-13T12:28:22,671 Created temporary directory: /tmp/pip-wheel-bsf7drnx 2021-07-13T12:28:22,700 1 location(s) to search for versions of hatshufflepy: 2021-07-13T12:28:22,700 * https://pypi.org/simple/hatshufflepy/ 2021-07-13T12:28:22,700 Fetching project page and analyzing links: https://pypi.org/simple/hatshufflepy/ 2021-07-13T12:28:22,701 Getting page https://pypi.org/simple/hatshufflepy/ 2021-07-13T12:28:22,703 Found index url https://pypi.org/simple 2021-07-13T12:28:22,791 Found link https://files.pythonhosted.org/packages/2f/55/14d78ef177d725c0ddec3583bd5b9383440e399fa94e00aab8e519a0f850/hatshufflepy-0.0.1.tar.gz#sha256=7be56854f4688082d308d8b589b963fff3ae097cf4b68f55ab6a445657d13411 (from https://pypi.org/simple/hatshufflepy/), version: 0.0.1 2021-07-13T12:28:22,791 Found link https://files.pythonhosted.org/packages/65/e3/88ea19e93c06bd31230b273b46bad89c3fd39f5a25edc5485a2e8bc47802/hatshufflepy-0.0.2.tar.gz#sha256=78fa24bac311a90a976e20516e1f9dd12240ad88074424484ecce3f745d3c1e8 (from https://pypi.org/simple/hatshufflepy/), version: 0.0.2 2021-07-13T12:28:22,792 Found link https://files.pythonhosted.org/packages/27/6f/232dfb1720bec6a4327b3ea607eb148fb7e9c056d76c550993415d21c87a/hatshufflepy-0.0.3.tar.gz#sha256=95deececa6434dff101a9256593463a8271318fa3d91abe99e89da100727306e (from https://pypi.org/simple/hatshufflepy/), version: 0.0.3 2021-07-13T12:28:22,792 Found link https://files.pythonhosted.org/packages/31/bc/f2a7c97edee256489b4f10461688486d5f811a94a2ab1b6489f3ae7b624b/hatshufflepy-0.0.4.tar.gz#sha256=159b9981928de8ea98e17cfd28ff0c3dd803f90748706a4bea4eb57d903e2d45 (from https://pypi.org/simple/hatshufflepy/), version: 0.0.4 2021-07-13T12:28:22,792 Found link https://files.pythonhosted.org/packages/a9/0b/42071a0bef328b560c14eb80ce532ecd63a4178f6f3bec4b5c04eae9af8e/hatshufflepy-0.0.5.tar.gz#sha256=2eb0e2d9b5740248782839466b6539d7d817af1fe412f390f538ca88ee7dd16e (from https://pypi.org/simple/hatshufflepy/), version: 0.0.5 2021-07-13T12:28:22,792 Found link https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz#sha256=7470de6ada404f62440131a088ca7d94816ebd300be0fe27136e8b83013e2f28 (from https://pypi.org/simple/hatshufflepy/), version: 0.0.6 2021-07-13T12:28:22,793 Skipping link: not a file: https://pypi.org/simple/hatshufflepy/ 2021-07-13T12:28:22,811 Given no hashes to check 1 links for project 'hatshufflepy': discarding no candidates 2021-07-13T12:28:22,830 Collecting hatshufflepy==0.0.6 2021-07-13T12:28:22,832 Created temporary directory: /tmp/pip-unpack-735t8cmk 2021-07-13T12:28:24,130 Downloading hatshufflepy-0.0.6.tar.gz (4.7 MB) 2021-07-13T12:28:25,548 Added hatshufflepy==0.0.6 from https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz#sha256=7470de6ada404f62440131a088ca7d94816ebd300be0fe27136e8b83013e2f28 to build tracker '/tmp/pip-req-tracker-nuynhrcy' 2021-07-13T12:28:25,549 Running setup.py (path:/tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/setup.py) egg_info for package hatshufflepy 2021-07-13T12:28:25,550 Created temporary directory: /tmp/pip-pip-egg-info-q4li_x2t 2021-07-13T12:28:25,550 Running command python setup.py egg_info 2021-07-13T12:28:27,080 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/hatshufflepy/hatshufflepy.pxd 2021-07-13T12:28:27,081 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T12:28:27,650 /tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53 2021-07-13T12:28:27,650 Compiling hatshufflepy/hatshufflepy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/string.pxd. 2021-07-13T12:28:27,650 [1/1] Cythonizing hatshufflepy/hatshufflepy.pyx 2021-07-13T12:28:27,678 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T12:28:27,678 warnings.warn( 2021-07-13T12:28:27,801 running egg_info 2021-07-13T12:28:27,805 creating /tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info 2021-07-13T12:28:27,807 writing /tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/PKG-INFO 2021-07-13T12:28:27,812 writing dependency_links to /tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/dependency_links.txt 2021-07-13T12:28:27,816 writing requirements to /tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/requires.txt 2021-07-13T12:28:27,817 writing top-level names to /tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/top_level.txt 2021-07-13T12:28:27,819 writing manifest file '/tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/SOURCES.txt' 2021-07-13T12:28:27,826 reading manifest file '/tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/SOURCES.txt' 2021-07-13T12:28:27,828 reading manifest template 'MANIFEST.in' 2021-07-13T12:28:27,896 writing manifest file '/tmp/pip-pip-egg-info-q4li_x2t/hatshufflepy.egg-info/SOURCES.txt' 2021-07-13T12:28:28,013 Source in /tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53 has version 0.0.6, which satisfies requirement hatshufflepy==0.0.6 from https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz#sha256=7470de6ada404f62440131a088ca7d94816ebd300be0fe27136e8b83013e2f28 2021-07-13T12:28:28,014 Removed hatshufflepy==0.0.6 from https://files.pythonhosted.org/packages/c3/5b/2bc2424b1b81c13141bacaff629c9be11a9442d165feb7b91312b16f991e/hatshufflepy-0.0.6.tar.gz#sha256=7470de6ada404f62440131a088ca7d94816ebd300be0fe27136e8b83013e2f28 from build tracker '/tmp/pip-req-tracker-nuynhrcy' 2021-07-13T12:28:28,017 Created temporary directory: /tmp/pip-unpack-gscbve3j 2021-07-13T12:28:28,018 Building wheels for collected packages: hatshufflepy 2021-07-13T12:28:28,022 Created temporary directory: /tmp/pip-wheel-rluij701 2021-07-13T12:28:28,022 Building wheel for hatshufflepy (setup.py): started 2021-07-13T12:28:28,023 Destination directory: /tmp/pip-wheel-rluij701 2021-07-13T12:28:28,023 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rluij701 2021-07-13T12:28:28,927 /tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53 2021-07-13T12:28:29,434 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T12:28:29,435 warnings.warn( 2021-07-13T12:28:29,557 running bdist_wheel 2021-07-13T12:28:29,562 running build 2021-07-13T12:28:29,562 running build_ext 2021-07-13T12:28:29,567 building 'hatshufflepy' extension 2021-07-13T12:28:29,567 creating build 2021-07-13T12:28:29,567 creating build/temp.linux-armv7l-3.9 2021-07-13T12:28:29,568 creating build/temp.linux-armv7l-3.9/hatshufflepy 2021-07-13T12:28:29,568 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ihatshufflepy/libhatshuffle/include/libhatshuffle -Ihatshufflepy/libhatshuffle/include -Ilibhatshuffle/include/libff -I/usr/include/python3.9 -c hatshufflepy/hatshufflepy.cpp -o build/temp.linux-armv7l-3.9/hatshufflepy/hatshufflepy.o -std=c++11 -fPIC -shared -w -static -O3 2021-07-13T12:28:42,707 creating build/lib.linux-armv7l-3.9 2021-07-13T12:28:42,707 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/hatshufflepy/hatshufflepy.o -L/usr/local/lib -Lhatshufflepy/libhatshuffle/lib -Wl,--enable-new-dtags,-R/tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/hatshufflepy/libhatshuffle/lib -Wl,--enable-new-dtags,-R/usr/local/lib/python3.9/dist-packages/hatshufflepy -Wl,--enable-new-dtags,-R/usr/lib/python3/dist-packages/hatshufflepy -lzm -lff -lhatshuffle -o build/lib.linux-armv7l-3.9/hatshufflepy.cpython-39-arm-linux-gnueabihf.so -lgmp -fopenmp -g 2021-07-13T12:28:42,751 hatshufflepy/libhatshuffle/lib/libzm.so: file not recognized: file format not recognized 2021-07-13T12:28:42,752 collect2: error: ld returned 1 exit status 2021-07-13T12:28:42,755 error: command '/usr/bin/arm-linux-gnueabihf-g++' failed with exit code 1 2021-07-13T12:28:42,857 Building wheel for hatshufflepy (setup.py): finished with status 'error' 2021-07-13T12:28:42,858 ERROR: Failed building wheel for hatshufflepy 2021-07-13T12:28:42,858 Running setup.py clean for hatshufflepy 2021-07-13T12:28:42,859 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T12:28:43,816 /tmp/pip-wheel-bsf7drnx/hatshufflepy_b4cfe3cbd1c74c1b82f9ef36f2652f53 2021-07-13T12:28:44,333 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-13T12:28:44,333 warnings.warn( 2021-07-13T12:28:44,432 running clean 2021-07-13T12:28:44,434 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T12:28:44,437 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T12:28:44,438 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T12:28:44,438 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T12:28:44,438 removing 'build' 2021-07-13T12:28:44,525 Failed to build hatshufflepy 2021-07-13T12:28:44,526 ERROR: Failed to build one or more wheels 2021-07-13T12:28:44,526 Exception information: 2021-07-13T12:28:44,526 Traceback (most recent call last): 2021-07-13T12:28:44,526 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T12:28:44,526 status = self.run(options, args) 2021-07-13T12:28:44,526 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T12:28:44,526 return func(self, options, args) 2021-07-13T12:28:44,526 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T12:28:44,526 raise CommandError( 2021-07-13T12:28:44,526 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T12:28:44,529 Removed build tracker: '/tmp/pip-req-tracker-nuynhrcy'