2021-07-13T12:28:26,703 Created temporary directory: /tmp/pip-ephem-wheel-cache-r72zun7n
2021-07-13T12:28:26,706 Created temporary directory: /tmp/pip-req-tracker-fxvpgq69
2021-07-13T12:28:26,707 Initialized build tracking at /tmp/pip-req-tracker-fxvpgq69
2021-07-13T12:28:26,707 Created build tracker: /tmp/pip-req-tracker-fxvpgq69
2021-07-13T12:28:26,707 Entered build tracker: /tmp/pip-req-tracker-fxvpgq69
2021-07-13T12:28:26,708 Created temporary directory: /tmp/pip-wheel-8krrydn_
2021-07-13T12:28:26,737 1 location(s) to search for versions of ampal:
2021-07-13T12:28:26,737 * https://pypi.org/simple/ampal/
2021-07-13T12:28:26,738 Fetching project page and analyzing links: https://pypi.org/simple/ampal/
2021-07-13T12:28:26,738 Getting page https://pypi.org/simple/ampal/
2021-07-13T12:28:26,740 Found index url https://pypi.org/simple
2021-07-13T12:28:26,829   Found link https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d (from https://pypi.org/simple/ampal/), version: 1.0.0
2021-07-13T12:28:26,830   Found link https://files.pythonhosted.org/packages/c2/90/2aecb8bdeab8de4f896f38fc792b434292f0f96a86cd3b860c849f4cfd55/AMPAL-1.0.1.tar.gz#sha256=58e351534d49ef3a7b5267dd32462c20852a63213a36acfbf670e447009cac21 (from https://pypi.org/simple/ampal/), version: 1.0.1
2021-07-13T12:28:26,830   Found link https://files.pythonhosted.org/packages/29/39/ac32680ba515731a81942c3a1bb8d0731fc0da02185885794ccf51dd604b/AMPAL-1.1.0.tar.gz#sha256=ab6beac3f730bc12a65d821a8b3d7ca68643e29179f08fef0607d45078bf1022 (from https://pypi.org/simple/ampal/), version: 1.1.0
2021-07-13T12:28:26,830   Found link https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7 (from https://pypi.org/simple/ampal/), version: 1.2.0
2021-07-13T12:28:26,831   Found link https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276 (from https://pypi.org/simple/ampal/), version: 1.3.0
2021-07-13T12:28:26,831   Found link https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc (from https://pypi.org/simple/ampal/), version: 1.4.0
2021-07-13T12:28:26,831 Skipping link: not a file: https://pypi.org/simple/ampal/
2021-07-13T12:28:26,849 Given no hashes to check 1 links for project 'ampal': discarding no candidates
2021-07-13T12:28:26,868 Collecting ampal==1.2.0
2021-07-13T12:28:26,869   Created temporary directory: /tmp/pip-unpack-mrwei31n
2021-07-13T12:28:27,552   Downloading AMPAL-1.2.0.tar.gz (1.2 MB)
2021-07-13T12:28:28,011   Added ampal==1.2.0 from https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7 to build tracker '/tmp/pip-req-tracker-fxvpgq69'
2021-07-13T12:28:28,012     Running setup.py (path:/tmp/pip-wheel-8krrydn_/ampal_b39b58ed44eb4fb6afd0f2a1f632b354/setup.py) egg_info for package ampal
2021-07-13T12:28:28,013     Created temporary directory: /tmp/pip-pip-egg-info-9nucr4ue
2021-07-13T12:28:28,013     Running command python setup.py egg_info
2021-07-13T12:28:29,703     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8krrydn_/ampal_b39b58ed44eb4fb6afd0f2a1f632b354/src/ampal/geometry.pyx
2021-07-13T12:28:29,703       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T12:28:33,119     Compiling src/ampal/geometry.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-13T12:28:33,119     [1/1] Cythonizing src/ampal/geometry.pyx
2021-07-13T12:28:33,273     running egg_info
2021-07-13T12:28:33,276     creating /tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info
2021-07-13T12:28:33,277     writing /tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/PKG-INFO
2021-07-13T12:28:33,280     writing dependency_links to /tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/dependency_links.txt
2021-07-13T12:28:33,282     writing requirements to /tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/requires.txt
2021-07-13T12:28:33,282     writing top-level names to /tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/top_level.txt
2021-07-13T12:28:33,284     writing manifest file '/tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/SOURCES.txt'
2021-07-13T12:28:33,432     reading manifest file '/tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/SOURCES.txt'
2021-07-13T12:28:33,434     reading manifest template 'MANIFEST.in'
2021-07-13T12:28:33,435     warning: no files found matching 'LICENSE.txt'
2021-07-13T12:28:33,461     writing manifest file '/tmp/pip-pip-egg-info-9nucr4ue/AMPAL.egg-info/SOURCES.txt'
2021-07-13T12:28:33,655   Source in /tmp/pip-wheel-8krrydn_/ampal_b39b58ed44eb4fb6afd0f2a1f632b354 has version 1.2.0, which satisfies requirement ampal==1.2.0 from https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7
2021-07-13T12:28:33,656   Removed ampal==1.2.0 from https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7 from build tracker '/tmp/pip-req-tracker-fxvpgq69'
2021-07-13T12:28:33,660 Created temporary directory: /tmp/pip-unpack-fxclgee1
2021-07-13T12:28:33,661 Building wheels for collected packages: ampal
2021-07-13T12:28:33,664   Created temporary directory: /tmp/pip-wheel-kynd9l1z
2021-07-13T12:28:33,665   Building wheel for ampal (setup.py): started
2021-07-13T12:28:33,665   Destination directory: /tmp/pip-wheel-kynd9l1z
2021-07-13T12:28:33,665   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8krrydn_/ampal_b39b58ed44eb4fb6afd0f2a1f632b354/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8krrydn_/ampal_b39b58ed44eb4fb6afd0f2a1f632b354/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-kynd9l1z
2021-07-13T12:28:35,355   running bdist_wheel
2021-07-13T12:28:35,360   running build
2021-07-13T12:28:35,360   running build_py
2021-07-13T12:28:35,499   creating build
2021-07-13T12:28:35,500   creating build/lib.linux-armv7l-3.9
2021-07-13T12:28:35,500   creating build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,501   copying src/ampal/data.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,504   copying src/ampal/pseudo_atoms.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,506   copying src/ampal/interactions.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,508   copying src/ampal/__init__.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,510   copying src/ampal/ampal_warnings.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,512   copying src/ampal/analyse_protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,515   copying src/ampal/protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,518   copying src/ampal/dssp.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,520   copying src/ampal/amino_acids.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,522   copying src/ampal/assembly.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,525   copying src/ampal/align.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,527   copying src/ampal/pdb_parser.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,530   copying src/ampal/base_ampal.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,534   copying src/ampal/ligands.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,536   copying src/ampal/nucleic_acid.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,538   running egg_info
2021-07-13T12:28:35,556   writing src/AMPAL.egg-info/PKG-INFO
2021-07-13T12:28:35,558   writing dependency_links to src/AMPAL.egg-info/dependency_links.txt
2021-07-13T12:28:35,560   writing requirements to src/AMPAL.egg-info/requires.txt
2021-07-13T12:28:35,561   writing top-level names to src/AMPAL.egg-info/top_level.txt
2021-07-13T12:28:35,569   reading manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T12:28:35,571   reading manifest template 'MANIFEST.in'
2021-07-13T12:28:35,572   warning: no files found matching 'LICENSE.txt'
2021-07-13T12:28:35,598   writing manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T12:28:35,602   copying src/ampal/.dssp.py.swp -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,606   copying src/ampal/geometry.c -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,646   copying src/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,715   copying src/ampal/geometry.pyx -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T12:28:35,719   creating build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,720   copying src/ampal/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,723   copying src/ampal/__pycache__/align.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,725   copying src/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,729   copying src/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,732   copying src/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,736   copying src/ampal/__pycache__/assembly.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,740   copying src/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,745   copying src/ampal/__pycache__/data.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,748   copying src/ampal/__pycache__/dssp.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,751   copying src/ampal/__pycache__/interactions.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,755   copying src/ampal/__pycache__/ligands.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,757   copying src/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,761   copying src/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,764   copying src/ampal/__pycache__/protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,768   copying src/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T12:28:35,772   creating build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T12:28:35,773   copying src/ampal/datafiles/amino_acids.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T12:28:35,779   copying src/ampal/datafiles/chemical_elements.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T12:28:35,784   copying src/ampal/datafiles/pdb_atom_column_format.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T12:28:35,791   running build_ext
2021-07-13T12:28:35,796   building 'ampal.geometry' extension
2021-07-13T12:28:35,797   creating build/temp.linux-armv7l-3.9
2021-07-13T12:28:35,798   creating build/temp.linux-armv7l-3.9/src
2021-07-13T12:28:35,799   creating build/temp.linux-armv7l-3.9/src/ampal
2021-07-13T12:28:35,800   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/ampal/geometry.c -o build/temp.linux-armv7l-3.9/src/ampal/geometry.o
2021-07-13T12:28:38,837   src/ampal/geometry.c:3694:18: warning: ‘__pyx_f_5ampal_8geometry__unit_vector’ defined but not used [-Wunused-function]
2021-07-13T12:28:38,837    3694 | static PyObject *__pyx_f_5ampal_8geometry__unit_vector(double *__pyx_v_a) {
2021-07-13T12:28:38,837         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T12:28:38,838   src/ampal/geometry.c:2911:15: warning: ‘__pyx_f_5ampal_8geometry__dot_product_2d’ defined but not used [-Wunused-function]
2021-07-13T12:28:38,838    2911 | static double __pyx_f_5ampal_8geometry__dot_product_2d(double *__pyx_v_a, double *__pyx_v_b) {
2021-07-13T12:28:38,839         |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T12:29:20,425   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/ampal/geometry.o -o build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so
2021-07-13T12:29:20,706   installing to build/bdist.linux-armv7l/wheel
2021-07-13T12:29:20,707   running install
2021-07-13T12:29:20,708   running install_lib
2021-07-13T12:29:20,714   creating build/bdist.linux-armv7l
2021-07-13T12:29:20,715   creating build/bdist.linux-armv7l/wheel
2021-07-13T12:29:20,717   creating build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,719   copying build/lib.linux-armv7l-3.9/ampal/data.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,721   copying build/lib.linux-armv7l-3.9/ampal/pseudo_atoms.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,725   copying build/lib.linux-armv7l-3.9/ampal/interactions.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,727   copying build/lib.linux-armv7l-3.9/ampal/__init__.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,730   copying build/lib.linux-armv7l-3.9/ampal/geometry.pyx -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,735   copying build/lib.linux-armv7l-3.9/ampal/ampal_warnings.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,737   creating build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T12:29:20,739   copying build/lib.linux-armv7l-3.9/ampal/datafiles/chemical_elements.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T12:29:20,743   copying build/lib.linux-armv7l-3.9/ampal/datafiles/pdb_atom_column_format.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T12:29:20,748   copying build/lib.linux-armv7l-3.9/ampal/datafiles/amino_acids.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T12:29:20,753   copying build/lib.linux-armv7l-3.9/ampal/analyse_protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,758   creating build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,759   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/interactions.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,762   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,766   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,769   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,772   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,775   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/align.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,778   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ligands.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,781   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,784   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,787   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/dssp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,790   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,792   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,795   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,798   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/assembly.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,801   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T12:29:20,804   copying build/lib.linux-armv7l-3.9/ampal/.dssp.py.swp -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,807   copying build/lib.linux-armv7l-3.9/ampal/protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,811   copying build/lib.linux-armv7l-3.9/ampal/dssp.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,813   copying build/lib.linux-armv7l-3.9/ampal/amino_acids.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,816   copying build/lib.linux-armv7l-3.9/ampal/geometry.c -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,856   copying build/lib.linux-armv7l-3.9/ampal/assembly.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,858   copying build/lib.linux-armv7l-3.9/ampal/align.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,860   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,918   copying build/lib.linux-armv7l-3.9/ampal/pdb_parser.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,921   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,988   copying build/lib.linux-armv7l-3.9/ampal/base_ampal.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,991   copying build/lib.linux-armv7l-3.9/ampal/ligands.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,993   copying build/lib.linux-armv7l-3.9/ampal/nucleic_acid.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T12:29:20,995   running install_egg_info
2021-07-13T12:29:21,006   Copying src/AMPAL.egg-info to build/bdist.linux-armv7l/wheel/AMPAL-1.2.0-py3.9.egg-info
2021-07-13T12:29:21,021   running install_scripts
2021-07-13T12:29:21,069   creating build/bdist.linux-armv7l/wheel/AMPAL-1.2.0.dist-info/WHEEL
2021-07-13T12:29:21,071   creating '/tmp/pip-wheel-kynd9l1z/AMPAL-1.2.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T12:29:21,076   adding 'ampal/.dssp.py.swp'
2021-07-13T12:29:21,077   adding 'ampal/__init__.py'
2021-07-13T12:29:21,079   adding 'ampal/align.py'
2021-07-13T12:29:21,082   adding 'ampal/amino_acids.py'
2021-07-13T12:29:21,084   adding 'ampal/ampal_warnings.py'
2021-07-13T12:29:21,087   adding 'ampal/analyse_protein.py'
2021-07-13T12:29:21,090   adding 'ampal/assembly.py'
2021-07-13T12:29:21,094   adding 'ampal/base_ampal.py'
2021-07-13T12:29:21,095   adding 'ampal/data.py'
2021-07-13T12:29:21,097   adding 'ampal/dssp.py'
2021-07-13T12:29:21,231   adding 'ampal/geometry.c'
2021-07-13T12:29:21,652   adding 'ampal/geometry.cpython-36m-x86_64-linux-gnu.so'
2021-07-13T12:29:22,160   adding 'ampal/geometry.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T12:29:22,187   adding 'ampal/geometry.pyx'
2021-07-13T12:29:22,189   adding 'ampal/interactions.py'
2021-07-13T12:29:22,190   adding 'ampal/ligands.py'
2021-07-13T12:29:22,192   adding 'ampal/nucleic_acid.py'
2021-07-13T12:29:22,194   adding 'ampal/pdb_parser.py'
2021-07-13T12:29:22,199   adding 'ampal/protein.py'
2021-07-13T12:29:22,201   adding 'ampal/pseudo_atoms.py'
2021-07-13T12:29:22,203   adding 'ampal/__pycache__/__init__.cpython-36.pyc'
2021-07-13T12:29:22,205   adding 'ampal/__pycache__/align.cpython-36.pyc'
2021-07-13T12:29:22,207   adding 'ampal/__pycache__/amino_acids.cpython-36.pyc'
2021-07-13T12:29:22,209   adding 'ampal/__pycache__/ampal_warnings.cpython-36.pyc'
2021-07-13T12:29:22,212   adding 'ampal/__pycache__/analyse_protein.cpython-36.pyc'
2021-07-13T12:29:22,216   adding 'ampal/__pycache__/assembly.cpython-36.pyc'
2021-07-13T12:29:22,220   adding 'ampal/__pycache__/base_ampal.cpython-36.pyc'
2021-07-13T12:29:22,221   adding 'ampal/__pycache__/data.cpython-36.pyc'
2021-07-13T12:29:22,223   adding 'ampal/__pycache__/dssp.cpython-36.pyc'
2021-07-13T12:29:22,225   adding 'ampal/__pycache__/interactions.cpython-36.pyc'
2021-07-13T12:29:22,227   adding 'ampal/__pycache__/ligands.cpython-36.pyc'
2021-07-13T12:29:22,228   adding 'ampal/__pycache__/nucleic_acid.cpython-36.pyc'
2021-07-13T12:29:22,231   adding 'ampal/__pycache__/pdb_parser.cpython-36.pyc'
2021-07-13T12:29:22,236   adding 'ampal/__pycache__/protein.cpython-36.pyc'
2021-07-13T12:29:22,239   adding 'ampal/__pycache__/pseudo_atoms.cpython-36.pyc'
2021-07-13T12:29:22,247   adding 'ampal/datafiles/amino_acids.json'
2021-07-13T12:29:22,252   adding 'ampal/datafiles/chemical_elements.json'
2021-07-13T12:29:22,271   adding 'ampal/datafiles/pdb_atom_column_format.json'
2021-07-13T12:29:22,272   adding 'AMPAL-1.2.0.dist-info/METADATA'
2021-07-13T12:29:22,273   adding 'AMPAL-1.2.0.dist-info/WHEEL'
2021-07-13T12:29:22,274   adding 'AMPAL-1.2.0.dist-info/top_level.txt'
2021-07-13T12:29:22,275   adding 'AMPAL-1.2.0.dist-info/RECORD'
2021-07-13T12:29:22,314   removing build/bdist.linux-armv7l/wheel
2021-07-13T12:29:22,445   Building wheel for ampal (setup.py): finished with status 'done'
2021-07-13T12:29:22,474   Created wheel for ampal: filename=AMPAL-1.2.0-cp39-cp39-linux_armv7l.whl size=2115447 sha256=d90582d5d32b21b4ed8ea8084798413b2b24635c607cadb2e785c6c8507d0ca0
2021-07-13T12:29:22,475   Stored in directory: /tmp/pip-ephem-wheel-cache-r72zun7n/wheels/7d/cf/db/e7ef1c0ca23c324860c177b02813b5afc0b3302b2fdf7cea27
2021-07-13T12:29:22,486 Successfully built ampal
2021-07-13T12:29:22,559 Removed build tracker: '/tmp/pip-req-tracker-fxvpgq69'