2021-07-13T14:02:57,070 Created temporary directory: /tmp/pip-ephem-wheel-cache-b8ebmnot 2021-07-13T14:02:57,073 Created temporary directory: /tmp/pip-req-tracker-2p5xjdcn 2021-07-13T14:02:57,074 Initialized build tracking at /tmp/pip-req-tracker-2p5xjdcn 2021-07-13T14:02:57,074 Created build tracker: /tmp/pip-req-tracker-2p5xjdcn 2021-07-13T14:02:57,074 Entered build tracker: /tmp/pip-req-tracker-2p5xjdcn 2021-07-13T14:02:57,075 Created temporary directory: /tmp/pip-wheel-sn5o6jy4 2021-07-13T14:02:57,105 1 location(s) to search for versions of msmtools: 2021-07-13T14:02:57,105 * https://pypi.org/simple/msmtools/ 2021-07-13T14:02:57,105 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/ 2021-07-13T14:02:57,106 Getting page https://pypi.org/simple/msmtools/ 2021-07-13T14:02:57,107 Found index url https://pypi.org/simple 2021-07-13T14:02:57,291 Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0 2021-07-13T14:02:57,291 Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1 2021-07-13T14:02:57,291 Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2 2021-07-13T14:02:57,292 Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3 2021-07-13T14:02:57,292 Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4 2021-07-13T14:02:57,292 Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1 2021-07-13T14:02:57,292 Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1 2021-07-13T14:02:57,293 Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2 2021-07-13T14:02:57,293 Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3 2021-07-13T14:02:57,293 Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4 2021-07-13T14:02:57,294 Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2 2021-07-13T14:02:57,294 Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1 2021-07-13T14:02:57,294 Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2 2021-07-13T14:02:57,294 Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3 2021-07-13T14:02:57,295 Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4 2021-07-13T14:02:57,295 Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5 2021-07-13T14:02:57,295 Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6 2021-07-13T14:02:57,296 Skipping link: not a file: https://pypi.org/simple/msmtools/ 2021-07-13T14:02:57,315 Given no hashes to check 1 links for project 'msmtools': discarding no candidates 2021-07-13T14:02:57,334 Collecting msmtools==1.2.2 2021-07-13T14:02:57,336 Created temporary directory: /tmp/pip-unpack-1lgy2x3v 2021-07-13T14:02:57,522 Downloading msmtools-1.2.2.tar.gz (887 kB) 2021-07-13T14:02:58,324 Added msmtools==1.2.2 from https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 to build tracker '/tmp/pip-req-tracker-2p5xjdcn' 2021-07-13T14:02:58,325 Running setup.py (path:/tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/setup.py) egg_info for package msmtools 2021-07-13T14:02:58,326 Created temporary directory: /tmp/pip-pip-egg-info-ssfwal6n 2021-07-13T14:02:58,326 Running command python setup.py egg_info 2021-07-13T14:02:59,865 running egg_info 2021-07-13T14:02:59,867 creating /tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info 2021-07-13T14:02:59,869 writing /tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/PKG-INFO 2021-07-13T14:02:59,871 writing dependency_links to /tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/dependency_links.txt 2021-07-13T14:02:59,873 writing requirements to /tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/requires.txt 2021-07-13T14:03:00,838 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/dense/mle_trev.pyx 2021-07-13T14:03:00,838 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:02,315 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-13T14:03:02,316 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:03,696 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/dense/sampler_rev.pyx 2021-07-13T14:03:03,696 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:05,333 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/dense/sampler_revpi.pyx 2021-07-13T14:03:05,333 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:07,176 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/sparse/mle_trev.pyx 2021-07-13T14:03:07,177 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:08,682 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-13T14:03:08,683 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:10,079 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/estimation/sparse/newton/objective_sparse.pyx 2021-07-13T14:03:10,080 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:12,133 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/msmtools/util/kahandot_src/kahandot.pyx 2021-07-13T14:03:12,133 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T14:03:13,387 Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,387 Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,388 Compiling msmtools/estimation/dense/mle_trev.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,388 Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,388 Compiling msmtools/estimation/sparse/newton/objective_sparse.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,388 Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,388 Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,388 Compiling msmtools/util/kahandot_src/kahandot.pyx because it depends on /home/piwheels/.local/lib/python3.9/site-packages/numpy/__init__.pxd. 2021-07-13T14:03:13,389 [1/8] Cythonizing msmtools/estimation/dense/mle_trev.pyx 2021-07-13T14:03:13,389 [2/8] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-13T14:03:13,389 [3/8] Cythonizing msmtools/estimation/dense/sampler_rev.pyx 2021-07-13T14:03:13,389 [4/8] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx 2021-07-13T14:03:13,389 [5/8] Cythonizing msmtools/estimation/sparse/mle_trev.pyx 2021-07-13T14:03:13,389 [6/8] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-13T14:03:13,389 [7/8] Cythonizing msmtools/estimation/sparse/newton/objective_sparse.pyx 2021-07-13T14:03:13,390 [8/8] Cythonizing msmtools/util/kahandot_src/kahandot.pyx 2021-07-13T14:03:13,390 writing top-level names to /tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/top_level.txt 2021-07-13T14:03:13,390 writing manifest file '/tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/SOURCES.txt' 2021-07-13T14:03:13,469 reading manifest file '/tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/SOURCES.txt' 2021-07-13T14:03:13,471 reading manifest template 'MANIFEST.in' 2021-07-13T14:03:13,840 adding license file 'LICENSE.txt' 2021-07-13T14:03:13,851 writing manifest file '/tmp/pip-pip-egg-info-ssfwal6n/msmtools.egg-info/SOURCES.txt' 2021-07-13T14:03:14,119 Source in /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b has version 1.2.2, which satisfies requirement msmtools==1.2.2 from https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 2021-07-13T14:03:14,120 Removed msmtools==1.2.2 from https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 from build tracker '/tmp/pip-req-tracker-2p5xjdcn' 2021-07-13T14:03:14,124 Created temporary directory: /tmp/pip-unpack-03_qi3a1 2021-07-13T14:03:14,125 Building wheels for collected packages: msmtools 2021-07-13T14:03:14,129 Created temporary directory: /tmp/pip-wheel-lxiqv153 2021-07-13T14:03:14,129 Building wheel for msmtools (setup.py): started 2021-07-13T14:03:14,129 Destination directory: /tmp/pip-wheel-lxiqv153 2021-07-13T14:03:14,130 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lxiqv153 2021-07-13T14:03:15,659 running bdist_wheel 2021-07-13T14:03:16,459 running build 2021-07-13T14:03:16,460 running build_py 2021-07-13T14:03:16,465 creating build 2021-07-13T14:03:16,465 creating build/lib.linux-armv7l-3.9 2021-07-13T14:03:16,466 creating build/lib.linux-armv7l-3.9/msmtools 2021-07-13T14:03:16,467 copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-13T14:03:16,469 copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-13T14:03:16,471 creating build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-13T14:03:16,472 copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-13T14:03:16,474 copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-13T14:03:16,478 creating build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,478 copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,481 copying msmtools/util/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,483 copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,485 copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,487 copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,489 copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,491 copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:16,494 creating build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-13T14:03:16,495 copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-13T14:03:16,498 copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-13T14:03:16,500 copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-13T14:03:16,502 copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-13T14:03:16,506 creating build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-13T14:03:16,507 copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-13T14:03:16,509 copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-13T14:03:16,512 creating build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-13T14:03:16,513 copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-13T14:03:16,515 copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-13T14:03:16,520 creating build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-13T14:03:16,520 copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-13T14:03:16,522 copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-13T14:03:16,527 creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,527 copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,529 copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,532 copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,534 copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,536 copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,538 copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,540 copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,543 copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,545 copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,547 copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,550 copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,552 copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,554 copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,556 copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,558 copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-13T14:03:16,563 creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,563 copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,566 copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,568 copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,570 copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,573 copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,576 copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,578 copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,580 copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,583 copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,585 copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,588 copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,590 copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,592 copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,594 copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,597 copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,600 copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,602 copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,606 copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,608 copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,610 copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,611 copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,613 copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,616 copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-13T14:03:16,619 creating build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,620 copying msmtools/analysis/tests/test_sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,622 copying msmtools/analysis/tests/test_fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,625 copying msmtools/analysis/tests/test_assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,627 copying msmtools/analysis/tests/test_decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,630 copying msmtools/analysis/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,632 copying msmtools/analysis/tests/test_expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,634 copying msmtools/analysis/tests/test_mfpt.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,636 copying msmtools/analysis/tests/test_committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:16,639 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-13T14:03:16,640 copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-13T14:03:16,643 copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-13T14:03:16,645 copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-13T14:03:16,648 creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-13T14:03:16,649 copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-13T14:03:16,651 copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-13T14:03:16,654 copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-13T14:03:16,656 copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-13T14:03:16,658 copying msmtools/flux/sparse/pathways_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-13T14:03:16,660 creating build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-13T14:03:16,661 copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-13T14:03:16,663 copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-13T14:03:16,666 copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-13T14:03:16,668 creating build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-13T14:03:16,669 copying msmtools/flux/tests/test_pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-13T14:03:16,672 copying msmtools/flux/tests/test_tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-13T14:03:16,674 copying msmtools/flux/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/tests 2021-07-13T14:03:16,677 creating build/lib.linux-armv7l-3.9/msmtools/generation/tests 2021-07-13T14:03:16,677 copying msmtools/generation/tests/test_generation.py -> build/lib.linux-armv7l-3.9/msmtools/generation/tests 2021-07-13T14:03:16,679 copying msmtools/generation/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation/tests 2021-07-13T14:03:16,682 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,683 copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,685 copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,687 copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,689 copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,691 copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,693 copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,695 copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,697 copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,699 copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,701 copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,703 copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:16,707 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,707 copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,710 copying msmtools/estimation/dense/ratematrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,713 copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,715 copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,717 copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,720 copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,721 copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,723 copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,725 copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:16,729 creating build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,730 copying msmtools/estimation/tests/test_ratematrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,732 copying msmtools/estimation/tests/test_mle_trev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,735 copying msmtools/estimation/tests/test_likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,737 copying msmtools/estimation/tests/test_transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,739 copying msmtools/estimation/tests/test_prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,741 copying msmtools/estimation/tests/test_tmatrix_sampling.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,743 copying msmtools/estimation/tests/test_mle_trev_given_pi.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,746 copying msmtools/estimation/tests/test_connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,749 copying msmtools/estimation/tests/test_count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,751 copying msmtools/estimation/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,752 copying msmtools/estimation/tests/test_effective_count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,754 copying msmtools/estimation/tests/test_bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:16,757 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,758 copying msmtools/estimation/sparse/newton/linsolve_sparse.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,760 copying msmtools/estimation/sparse/newton/mle_rev_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,762 copying msmtools/estimation/sparse/newton/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,764 copying msmtools/estimation/sparse/newton/linsolve.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,767 copying msmtools/estimation/sparse/newton/objective_dense.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,769 copying msmtools/estimation/sparse/newton/mle_rev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:16,772 creating build/lib.linux-armv7l-3.9/msmtools/dtraj/tests 2021-07-13T14:03:16,773 copying msmtools/dtraj/tests/test_trajectory.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests 2021-07-13T14:03:16,775 copying msmtools/dtraj/tests/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests 2021-07-13T14:03:16,776 running egg_info 2021-07-13T14:03:16,787 writing msmtools.egg-info/PKG-INFO 2021-07-13T14:03:16,789 writing dependency_links to msmtools.egg-info/dependency_links.txt 2021-07-13T14:03:16,790 writing requirements to msmtools.egg-info/requires.txt 2021-07-13T14:03:16,792 writing top-level names to msmtools.egg-info/top_level.txt 2021-07-13T14:03:16,846 reading manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-13T14:03:16,854 reading manifest template 'MANIFEST.in' 2021-07-13T14:03:17,234 adding license file 'LICENSE.txt' 2021-07-13T14:03:17,250 writing manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-13T14:03:17,267 copying msmtools/analysis/tests/P_rev_251x251.dat -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-13T14:03:17,306 copying msmtools/util/sigint_handler.h -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-13T14:03:17,308 creating build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-13T14:03:17,309 copying msmtools/util/kahandot_src/_kahandot.c -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-13T14:03:17,311 copying msmtools/util/kahandot_src/_kahandot.h -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-13T14:03:17,313 copying msmtools/util/kahandot_src/kahandot.c -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-13T14:03:17,321 copying msmtools/util/kahandot_src/kahandot.pyx -> build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-13T14:03:17,324 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,325 copying msmtools/util/matrix/testfiles/matrix_complex.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,328 copying msmtools/util/matrix/testfiles/matrix_complex.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,330 copying msmtools/util/matrix/testfiles/matrix_float.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,332 copying msmtools/util/matrix/testfiles/matrix_float.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,334 copying msmtools/util/matrix/testfiles/matrix_int.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,336 copying msmtools/util/matrix/testfiles/matrix_int.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,338 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,341 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,343 copying msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,346 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,349 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,351 copying msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,353 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,356 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,358 copying msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-13T14:03:17,360 copying msmtools/estimation/sparse/_mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,362 copying msmtools/estimation/sparse/_mle_trev.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,365 copying msmtools/estimation/sparse/_mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,367 copying msmtools/estimation/sparse/_mle_trev_given_pi.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,370 copying msmtools/estimation/sparse/mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,381 copying msmtools/estimation/sparse/mle_trev.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,383 copying msmtools/estimation/sparse/mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,396 copying msmtools/estimation/sparse/mle_trev_given_pi.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:17,399 copying msmtools/estimation/dense/_mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,401 copying msmtools/estimation/dense/_mle_trev.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,404 copying msmtools/estimation/dense/_mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,406 copying msmtools/estimation/dense/_mle_trev_given_pi.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,409 copying msmtools/estimation/dense/mle_trev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,419 copying msmtools/estimation/dense/mle_trev.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,421 copying msmtools/estimation/dense/mle_trev_given_pi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,431 copying msmtools/estimation/dense/mle_trev_given_pi.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,433 copying msmtools/estimation/dense/sample_rev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,435 copying msmtools/estimation/dense/sample_rev.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,438 copying msmtools/estimation/dense/sample_revpi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,441 copying msmtools/estimation/dense/sample_revpi.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,443 copying msmtools/estimation/dense/sampler_rev.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,458 copying msmtools/estimation/dense/sampler_rev.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,460 copying msmtools/estimation/dense/sampler_revpi.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,476 copying msmtools/estimation/dense/sampler_revpi.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,479 copying msmtools/estimation/dense/util.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:17,481 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-13T14:03:17,482 copying msmtools/estimation/dense/rnglib/ranlib.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-13T14:03:17,486 copying msmtools/estimation/dense/rnglib/ranlib.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-13T14:03:17,489 copying msmtools/estimation/dense/rnglib/rnglib.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-13T14:03:17,493 copying msmtools/estimation/dense/rnglib/rnglib.h -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-13T14:03:17,496 copying msmtools/estimation/tests/test_transition_matrix.py.orig -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests 2021-07-13T14:03:17,499 creating build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,499 copying msmtools/estimation/tests/testfiles/C_13_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,502 copying msmtools/estimation/tests/testfiles/C_13_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,504 copying msmtools/estimation/tests/testfiles/C_1_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,506 copying msmtools/estimation/tests/testfiles/C_1_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,508 copying msmtools/estimation/tests/testfiles/C_7_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,510 copying msmtools/estimation/tests/testfiles/C_7_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,512 copying msmtools/estimation/tests/testfiles/dtraj.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,515 copying msmtools/estimation/tests/testfiles/dwell.npz -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,537 copying msmtools/estimation/tests/testfiles/pi.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles 2021-07-13T14:03:17,539 copying msmtools/estimation/sparse/newton/objective_sparse.c -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:17,557 copying msmtools/estimation/sparse/newton/objective_sparse.pyx -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:17,560 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/testfiles 2021-07-13T14:03:17,561 copying msmtools/estimation/sparse/newton/testfiles/C.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/testfiles 2021-07-13T14:03:17,570 creating build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles 2021-07-13T14:03:17,571 copying msmtools/dtraj/tests/testfiles/dtraj.dat -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles 2021-07-13T14:03:17,575 copying msmtools/dtraj/tests/testfiles/dtraj.npy -> build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles 2021-07-13T14:03:17,595 running build_ext 2021-07-13T14:03:18,062 /tmp/pip-wheel-sn5o6jy4/msmtools_2ec697baa65940358209d9bdf2ba309b/setup.py:200: UserWarning: enabled openmp 2021-07-13T14:03:18,062 warnings.warn('enabled openmp') 2021-07-13T14:03:18,064 building 'msmtools.estimation.dense.mle_trev_given_pi' extension 2021-07-13T14:03:18,065 creating build/temp.linux-armv7l-3.9 2021-07-13T14:03:18,066 creating build/temp.linux-armv7l-3.9/msmtools 2021-07-13T14:03:18,067 creating build/temp.linux-armv7l-3.9/msmtools/estimation 2021-07-13T14:03:18,068 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-13T14:03:18,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp 2021-07-13T14:03:18,472 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp 2021-07-13T14:03:18,889 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:03:18,889 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:03:18,889 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:03:18,889 from msmtools/estimation/dense/mle_trev_given_pi.c:638: 2021-07-13T14:03:18,890 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:03:18,890 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:03:18,890 | ^~~~~~~ 2021-07-13T14:03:21,889 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:03:22,024 building 'msmtools.estimation.sparse.mle_trev_given_pi' extension 2021-07-13T14:03:22,025 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-13T14:03:22,026 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp 2021-07-13T14:03:22,385 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp 2021-07-13T14:03:22,776 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:03:22,776 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:03:22,776 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:03:22,776 from msmtools/estimation/sparse/mle_trev_given_pi.c:639: 2021-07-13T14:03:22,777 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:03:22,777 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:03:22,777 | ^~~~~~~ 2021-07-13T14:03:27,095 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:03:27,233 building 'msmtools.estimation.dense.mle_trev' extension 2021-07-13T14:03:27,234 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o -fopenmp 2021-07-13T14:03:27,382 msmtools/estimation/dense/_mle_trev.c: In function ‘_mle_trev_dense’: 2021-07-13T14:03:27,383 msmtools/estimation/dense/_mle_trev.c:62:27: warning: unused variable ‘value’ [-Wunused-variable] 2021-07-13T14:03:27,384 62 | double rel_err, x_norm, value; 2021-07-13T14:03:27,384 | ^~~~~ 2021-07-13T14:03:27,609 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -fopenmp 2021-07-13T14:03:27,994 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:03:27,994 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:03:27,994 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:03:27,995 from msmtools/estimation/dense/mle_trev.c:638: 2021-07-13T14:03:27,995 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:03:27,995 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:03:27,995 | ^~~~~~~ 2021-07-13T14:03:31,659 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:03:31,788 building 'msmtools.estimation.sparse.mle_trev' extension 2021-07-13T14:03:31,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp 2021-07-13T14:03:32,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp 2021-07-13T14:03:32,555 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:03:32,555 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:03:32,555 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:03:32,555 from msmtools/estimation/sparse/mle_trev.c:638: 2021-07-13T14:03:32,556 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:03:32,556 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:03:32,556 | ^~~~~~~ 2021-07-13T14:03:36,987 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:03:37,126 building 'msmtools.estimation.sparse.newton.objective_sparse' extension 2021-07-13T14:03:37,127 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/newton 2021-07-13T14:03:37,127 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/newton/objective_sparse.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.o -fopenmp 2021-07-13T14:03:37,512 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:03:37,513 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:03:37,513 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:03:37,513 from msmtools/estimation/sparse/newton/objective_sparse.c:637: 2021-07-13T14:03:37,513 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:03:37,513 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:03:37,514 | ^~~~~~~ 2021-07-13T14:03:37,592 msmtools/estimation/sparse/newton/objective_sparse.c: In function ‘__pyx_pf_8msmtools_10estimation_6sparse_6newton_16objective_sparse_convert_solution’: 2021-07-13T14:03:37,593 msmtools/estimation/sparse/newton/objective_sparse.c:2763:245: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t’ {aka ‘long int’} [-Wsign-compare] 2021-07-13T14:03:37,593 2763 | for (__pyx_t_18 = (*__Pyx_BufPtrStrided1d(__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t *, __pyx_pybuffernd_indptr.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_indptr.diminfo[0].strides)); __pyx_t_18 < __pyx_t_20; __pyx_t_18+=1) { 2021-07-13T14:03:37,594 | ^ 2021-07-13T14:03:37,631 msmtools/estimation/sparse/newton/objective_sparse.c: In function ‘__pyx_pf_8msmtools_10estimation_6sparse_6newton_16objective_sparse_2F’: 2021-07-13T14:03:37,633 msmtools/estimation/sparse/newton/objective_sparse.c:3676:245: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t’ {aka ‘long int’} [-Wsign-compare] 2021-07-13T14:03:37,633 3676 | for (__pyx_t_18 = (*__Pyx_BufPtrStrided1d(__pyx_t_8msmtools_10estimation_6sparse_6newton_16objective_sparse_DTYPE_INT_t *, __pyx_pybuffernd_indptr.rcbuffer->pybuffer.buf, __pyx_t_17, __pyx_pybuffernd_indptr.diminfo[0].strides)); __pyx_t_18 < __pyx_t_20; __pyx_t_18+=1) { 2021-07-13T14:03:37,634 | ^ 2021-07-13T14:03:37,678 msmtools/estimation/sparse/newton/objective_sparse.c: In function ‘__pyx_pf_8msmtools_10estimation_6sparse_6newton_16objective_sparse_4_DF’: 2021-07-13T14:03:37,681 msmtools/estimation/sparse/newton/objective_sparse.c:4710:190: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘__pyx_t_5numpy_int32_t’ {aka ‘long int’} [-Wsign-compare] 2021-07-13T14:03:37,681 4710 | for (__pyx_t_21 = (*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_int32_t *, __pyx_pybuffernd_indptr.rcbuffer->pybuffer.buf, __pyx_t_18, __pyx_pybuffernd_indptr.diminfo[0].strides)); __pyx_t_21 < __pyx_t_20; __pyx_t_21+=1) { 2021-07-13T14:03:37,681 | ^ 2021-07-13T14:03:51,502 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.o -lm -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:03:51,686 building 'msmtools.estimation.dense.sampler_rev' extension 2021-07-13T14:03:51,687 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib 2021-07-13T14:03:51,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o -fopenmp 2021-07-13T14:03:51,846 msmtools/estimation/dense/rnglib/ranlib.c: In function ‘ignpoi’: 2021-07-13T14:03:51,847 msmtools/estimation/dense/rnglib/ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-13T14:03:51,847 1549 | int m; 2021-07-13T14:03:51,847 | ^ 2021-07-13T14:03:53,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o -fopenmp 2021-07-13T14:03:53,422 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘cgn_memory’: 2021-07-13T14:03:53,422 msmtools/estimation/dense/rnglib/rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-13T14:03:53,422 449 | int j; 2021-07-13T14:03:53,423 | ^ 2021-07-13T14:03:53,428 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_initial_seed’: 2021-07-13T14:03:53,429 msmtools/estimation/dense/rnglib/rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-13T14:03:53,429 1610 | int i; 2021-07-13T14:03:53,429 | ^ 2021-07-13T14:03:53,430 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_seed’: 2021-07-13T14:03:53,430 msmtools/estimation/dense/rnglib/rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-13T14:03:53,430 1709 | int i; 2021-07-13T14:03:53,431 | ^ 2021-07-13T14:03:53,950 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp 2021-07-13T14:03:54,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp 2021-07-13T14:03:54,944 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:03:54,944 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:03:54,945 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:03:54,945 from msmtools/estimation/dense/sampler_rev.c:640: 2021-07-13T14:03:54,945 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:03:54,945 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:03:54,945 | ^~~~~~~ 2021-07-13T14:04:03,381 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:04:03,551 building 'msmtools.estimation.dense.sampler_revpi' extension 2021-07-13T14:04:03,552 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o -fopenmp 2021-07-13T14:04:03,711 msmtools/estimation/dense/rnglib/ranlib.c: In function ‘ignpoi’: 2021-07-13T14:04:03,711 msmtools/estimation/dense/rnglib/ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-13T14:04:03,712 1549 | int m; 2021-07-13T14:04:03,712 | ^ 2021-07-13T14:04:05,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/rnglib/rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o -fopenmp 2021-07-13T14:04:05,307 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘cgn_memory’: 2021-07-13T14:04:05,308 msmtools/estimation/dense/rnglib/rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-13T14:04:05,308 449 | int j; 2021-07-13T14:04:05,308 | ^ 2021-07-13T14:04:05,315 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_initial_seed’: 2021-07-13T14:04:05,316 msmtools/estimation/dense/rnglib/rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-13T14:04:05,316 1610 | int i; 2021-07-13T14:04:05,316 | ^ 2021-07-13T14:04:05,317 msmtools/estimation/dense/rnglib/rnglib.c: In function ‘set_seed’: 2021-07-13T14:04:05,318 msmtools/estimation/dense/rnglib/rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-13T14:04:05,318 1709 | int i; 2021-07-13T14:04:05,318 | ^ 2021-07-13T14:04:05,838 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp 2021-07-13T14:04:06,277 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp 2021-07-13T14:04:06,668 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:04:06,668 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:04:06,668 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:04:06,668 from msmtools/estimation/dense/sampler_revpi.c:640: 2021-07-13T14:04:06,668 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:04:06,669 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:04:06,669 | ^~~~~~~ 2021-07-13T14:04:16,121 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:04:16,285 building 'msmtools.util.kahandot' extension 2021-07-13T14:04:16,286 creating build/temp.linux-armv7l-3.9/msmtools/util 2021-07-13T14:04:16,286 creating build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src 2021-07-13T14:04:16,287 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/util/kahandot_src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/util/kahandot_src/_kahandot.c -o build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.o -fopenmp 2021-07-13T14:04:16,500 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/util/kahandot_src -I/home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/util/kahandot_src/kahandot.c -o build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.o -fopenmp 2021-07-13T14:04:16,892 In file included from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-13T14:04:16,892 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-13T14:04:16,892 from /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-13T14:04:16,892 from msmtools/util/kahandot_src/kahandot.c:637: 2021-07-13T14:04:16,892 /home/piwheels/.local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-13T14:04:16,892 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-13T14:04:16,893 | ^~~~~~~ 2021-07-13T14:04:18,699 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.o build/temp.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.o -o build/lib.linux-armv7l-3.9/msmtools/util/kahandot.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-13T14:04:18,835 installing to build/bdist.linux-armv7l/wheel 2021-07-13T14:04:18,836 running install 2021-07-13T14:04:18,837 running install_lib 2021-07-13T14:04:18,843 creating build/bdist.linux-armv7l 2021-07-13T14:04:18,843 creating build/bdist.linux-armv7l/wheel 2021-07-13T14:04:18,845 creating build/bdist.linux-armv7l/wheel/msmtools 2021-07-13T14:04:18,847 creating build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-13T14:04:18,849 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,850 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,853 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,855 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,858 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,860 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,863 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,865 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,868 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,870 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,872 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,874 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,876 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,878 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,880 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,883 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-13T14:04:18,886 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,886 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,889 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,891 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,893 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,895 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,898 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,900 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,902 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,905 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,907 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,909 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,911 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,913 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,915 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,918 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,920 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,923 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,926 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,927 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,929 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,931 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,933 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,936 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-13T14:04:18,938 copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-13T14:04:18,940 copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-13T14:04:18,945 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,946 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,948 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,951 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,953 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,957 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,958 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/P_rev_251x251.dat -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,996 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:18,998 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_mfpt.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:19,000 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-13T14:04:19,003 creating build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,004 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,010 copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,012 copying build/lib.linux-armv7l-3.9/msmtools/util/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,014 copying build/lib.linux-armv7l-3.9/msmtools/util/sigint_handler.h -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,016 copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,018 copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,020 copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,022 copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,025 creating build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-13T14:04:19,026 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.h -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-13T14:04:19,027 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/_kahandot.c -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-13T14:04:19,029 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.pyx -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-13T14:04:19,031 copying build/lib.linux-armv7l-3.9/msmtools/util/kahandot_src/kahandot.c -> build/bdist.linux-armv7l/wheel/msmtools/util/kahandot_src 2021-07-13T14:04:19,040 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-13T14:04:19,041 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,042 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,044 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,046 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,048 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,050 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,052 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,054 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,056 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,057 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,059 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,061 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,063 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,065 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,068 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,069 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-13T14:04:19,071 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-13T14:04:19,074 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-13T14:04:19,076 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-13T14:04:19,078 copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-13T14:04:19,081 copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-13T14:04:19,083 creating build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-13T14:04:19,085 creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-13T14:04:19,085 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-13T14:04:19,088 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-13T14:04:19,090 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-13T14:04:19,092 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-13T14:04:19,094 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-13T14:04:19,097 creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-13T14:04:19,098 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-13T14:04:19,100 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-13T14:04:19,102 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-13T14:04:19,104 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-13T14:04:19,107 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-13T14:04:19,109 copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-13T14:04:19,111 copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-13T14:04:19,114 creating build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-13T14:04:19,115 copying build/lib.linux-armv7l-3.9/msmtools/flux/tests/test_pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-13T14:04:19,117 copying build/lib.linux-armv7l-3.9/msmtools/flux/tests/test_tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-13T14:04:19,120 copying build/lib.linux-armv7l-3.9/msmtools/flux/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/tests 2021-07-13T14:04:19,122 creating build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-13T14:04:19,123 copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-13T14:04:19,125 copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-13T14:04:19,128 creating build/bdist.linux-armv7l/wheel/msmtools/generation/tests 2021-07-13T14:04:19,129 copying build/lib.linux-armv7l-3.9/msmtools/generation/tests/test_generation.py -> build/bdist.linux-armv7l/wheel/msmtools/generation/tests 2021-07-13T14:04:19,131 copying build/lib.linux-armv7l-3.9/msmtools/generation/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation/tests 2021-07-13T14:04:19,133 creating build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-13T14:04:19,135 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,136 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,138 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,147 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,150 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,151 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,172 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,174 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/linsolve_sparse.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,176 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton/testfiles 2021-07-13T14:04:19,177 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/testfiles/C.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton/testfiles 2021-07-13T14:04:19,186 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/mle_rev_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,188 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_sparse.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,212 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,213 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/linsolve.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,216 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/objective_dense.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,218 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/newton/mle_rev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/newton 2021-07-13T14:04:19,220 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,221 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,223 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,225 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,227 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,229 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,231 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,233 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,235 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,237 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,239 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,241 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,243 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,252 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,262 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,264 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,266 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,268 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-13T14:04:19,278 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,279 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,281 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,290 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/ratematrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,293 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,295 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,297 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,315 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,333 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,335 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,337 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,339 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,342 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-13T14:04:19,342 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-13T14:04:19,346 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/ranlib.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-13T14:04:19,348 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-13T14:04:19,350 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/rnglib/rnglib.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense/rnglib 2021-07-13T14:04:19,353 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,355 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,358 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,360 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/util.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,362 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,364 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,366 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,368 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.pyx -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,370 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,371 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.h -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,373 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,382 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,391 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,393 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,395 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,407 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,423 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,430 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,432 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.c -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-13T14:04:19,434 copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-13T14:04:19,436 copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-13T14:04:19,440 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,441 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_ratematrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,443 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_mle_trev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,445 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,447 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,449 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,451 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_tmatrix_sampling.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,454 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_mle_trev_given_pi.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,456 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,459 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,460 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_13_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,461 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_13_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,463 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_7_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,465 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_1_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,467 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/pi.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,469 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_7_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,471 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/dwell.npz -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,493 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/dtraj.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,495 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/testfiles/C_1_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests/testfiles 2021-07-13T14:04:19,497 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,499 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,501 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_transition_matrix.py.orig -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,503 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_effective_count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,505 copying build/lib.linux-armv7l-3.9/msmtools/estimation/tests/test_bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/tests 2021-07-13T14:04:19,507 copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-13T14:04:19,510 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-13T14:04:19,511 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-13T14:04:19,513 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-13T14:04:19,516 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests 2021-07-13T14:04:19,517 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/test_trajectory.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests 2021-07-13T14:04:19,520 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests/testfiles 2021-07-13T14:04:19,521 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles/dtraj.npy -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests/testfiles 2021-07-13T14:04:19,525 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/testfiles/dtraj.dat -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests/testfiles 2021-07-13T14:04:19,528 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/tests/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj/tests 2021-07-13T14:04:19,529 running install_egg_info 2021-07-13T14:04:19,535 Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.2.2-py3.9.egg-info 2021-07-13T14:04:19,550 running install_scripts 2021-07-13T14:04:19,599 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-13T14:04:19,604 creating build/bdist.linux-armv7l/wheel/msmtools-1.2.2.dist-info/WHEEL 2021-07-13T14:04:19,606 creating '/tmp/pip-wheel-lxiqv153/msmtools-1.2.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T14:04:19,609 adding 'msmtools/__init__.py' 2021-07-13T14:04:19,610 adding 'msmtools/_version.py' 2021-07-13T14:04:19,612 adding 'msmtools/analysis/__init__.py' 2021-07-13T14:04:19,619 adding 'msmtools/analysis/api.py' 2021-07-13T14:04:19,622 adding 'msmtools/analysis/dense/__init__.py' 2021-07-13T14:04:19,623 adding 'msmtools/analysis/dense/assessment.py' 2021-07-13T14:04:19,625 adding 'msmtools/analysis/dense/assessment_test.py' 2021-07-13T14:04:19,626 adding 'msmtools/analysis/dense/committor.py' 2021-07-13T14:04:19,627 adding 'msmtools/analysis/dense/committor_test.py' 2021-07-13T14:04:19,629 adding 'msmtools/analysis/dense/correlations.py' 2021-07-13T14:04:19,631 adding 'msmtools/analysis/dense/correlations_test.py' 2021-07-13T14:04:19,633 adding 'msmtools/analysis/dense/decomposition.py' 2021-07-13T14:04:19,635 adding 'msmtools/analysis/dense/decomposition_test.py' 2021-07-13T14:04:19,637 adding 'msmtools/analysis/dense/expectations.py' 2021-07-13T14:04:19,638 adding 'msmtools/analysis/dense/expectations_test.py' 2021-07-13T14:04:19,640 adding 'msmtools/analysis/dense/fingerprints.py' 2021-07-13T14:04:19,642 adding 'msmtools/analysis/dense/fingerprints_test.py' 2021-07-13T14:04:19,643 adding 'msmtools/analysis/dense/hitting_probability.py' 2021-07-13T14:04:19,645 adding 'msmtools/analysis/dense/hitting_probability_test.py' 2021-07-13T14:04:19,646 adding 'msmtools/analysis/dense/mean_first_passage_time.py' 2021-07-13T14:04:19,648 adding 'msmtools/analysis/dense/mean_first_passage_time_test.py' 2021-07-13T14:04:19,651 adding 'msmtools/analysis/dense/pcca.py' 2021-07-13T14:04:19,652 adding 'msmtools/analysis/dense/pcca_test.py' 2021-07-13T14:04:19,654 adding 'msmtools/analysis/dense/sensitivity.py' 2021-07-13T14:04:19,656 adding 'msmtools/analysis/dense/sensitivity_test.py' 2021-07-13T14:04:19,657 adding 'msmtools/analysis/dense/stationary_vector.py' 2021-07-13T14:04:19,659 adding 'msmtools/analysis/dense/stationary_vector_test.py' 2021-07-13T14:04:19,661 adding 'msmtools/analysis/sparse/__init__.py' 2021-07-13T14:04:19,662 adding 'msmtools/analysis/sparse/assessment.py' 2021-07-13T14:04:19,664 adding 'msmtools/analysis/sparse/assessment_test.py' 2021-07-13T14:04:19,666 adding 'msmtools/analysis/sparse/committor.py' 2021-07-13T14:04:19,667 adding 'msmtools/analysis/sparse/committor_test.py' 2021-07-13T14:04:19,669 adding 'msmtools/analysis/sparse/decomposition.py' 2021-07-13T14:04:19,671 adding 'msmtools/analysis/sparse/decomposition_test.py' 2021-07-13T14:04:19,672 adding 'msmtools/analysis/sparse/expectations.py' 2021-07-13T14:04:19,674 adding 'msmtools/analysis/sparse/expectations_test.py' 2021-07-13T14:04:19,676 adding 'msmtools/analysis/sparse/fingerprints.py' 2021-07-13T14:04:19,677 adding 'msmtools/analysis/sparse/fingerprints_test.py' 2021-07-13T14:04:19,679 adding 'msmtools/analysis/sparse/mean_first_passage_time.py' 2021-07-13T14:04:19,680 adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py' 2021-07-13T14:04:19,682 adding 'msmtools/analysis/sparse/stationary_vector.py' 2021-07-13T14:04:19,683 adding 'msmtools/analysis/sparse/stationary_vector_test.py' 2021-07-13T14:04:19,761 adding 'msmtools/analysis/tests/P_rev_251x251.dat' 2021-07-13T14:04:19,775 adding 'msmtools/analysis/tests/__init__.py' 2021-07-13T14:04:19,776 adding 'msmtools/analysis/tests/test_assessment.py' 2021-07-13T14:04:19,778 adding 'msmtools/analysis/tests/test_committor.py' 2021-07-13T14:04:19,780 adding 'msmtools/analysis/tests/test_decomposition.py' 2021-07-13T14:04:19,781 adding 'msmtools/analysis/tests/test_expectations.py' 2021-07-13T14:04:19,783 adding 'msmtools/analysis/tests/test_fingerprints.py' 2021-07-13T14:04:19,785 adding 'msmtools/analysis/tests/test_mfpt.py' 2021-07-13T14:04:19,786 adding 'msmtools/analysis/tests/test_sensitivity.py' 2021-07-13T14:04:19,788 adding 'msmtools/dtraj/__init__.py' 2021-07-13T14:04:19,790 adding 'msmtools/dtraj/api.py' 2021-07-13T14:04:19,792 adding 'msmtools/dtraj/tests/__init__.py' 2021-07-13T14:04:19,793 adding 'msmtools/dtraj/tests/test_trajectory.py' 2021-07-13T14:04:19,800 adding 'msmtools/dtraj/tests/testfiles/dtraj.dat' 2021-07-13T14:04:19,809 adding 'msmtools/dtraj/tests/testfiles/dtraj.npy' 2021-07-13T14:04:19,812 adding 'msmtools/estimation/__init__.py' 2021-07-13T14:04:19,818 adding 'msmtools/estimation/api.py' 2021-07-13T14:04:19,821 adding 'msmtools/estimation/dense/__init__.py' 2021-07-13T14:04:19,822 adding 'msmtools/estimation/dense/_mle_trev.c' 2021-07-13T14:04:19,823 adding 'msmtools/estimation/dense/_mle_trev.h' 2021-07-13T14:04:19,825 adding 'msmtools/estimation/dense/_mle_trev_given_pi.c' 2021-07-13T14:04:19,826 adding 'msmtools/estimation/dense/_mle_trev_given_pi.h' 2021-07-13T14:04:19,828 adding 'msmtools/estimation/dense/bootstrapping.py' 2021-07-13T14:04:19,829 adding 'msmtools/estimation/dense/covariance.py' 2021-07-13T14:04:19,830 adding 'msmtools/estimation/dense/covariance_test.py' 2021-07-13T14:04:19,856 adding 'msmtools/estimation/dense/mle_trev.c' 2021-07-13T14:04:19,911 adding 'msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:19,914 adding 'msmtools/estimation/dense/mle_trev.pyx' 2021-07-13T14:04:19,937 adding 'msmtools/estimation/dense/mle_trev_given_pi.c' 2021-07-13T14:04:19,981 adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:19,985 adding 'msmtools/estimation/dense/mle_trev_given_pi.pyx' 2021-07-13T14:04:19,988 adding 'msmtools/estimation/dense/ratematrix.py' 2021-07-13T14:04:19,990 adding 'msmtools/estimation/dense/sample_rev.c' 2021-07-13T14:04:19,991 adding 'msmtools/estimation/dense/sample_rev.h' 2021-07-13T14:04:19,993 adding 'msmtools/estimation/dense/sample_revpi.c' 2021-07-13T14:04:19,994 adding 'msmtools/estimation/dense/sample_revpi.h' 2021-07-13T14:04:19,995 adding 'msmtools/estimation/dense/sampler_nrev.py' 2021-07-13T14:04:20,034 adding 'msmtools/estimation/dense/sampler_rev.c' 2021-07-13T14:04:20,185 adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:20,192 adding 'msmtools/estimation/dense/sampler_rev.pyx' 2021-07-13T14:04:20,234 adding 'msmtools/estimation/dense/sampler_revpi.c' 2021-07-13T14:04:20,392 adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:20,400 adding 'msmtools/estimation/dense/sampler_revpi.pyx' 2021-07-13T14:04:20,401 adding 'msmtools/estimation/dense/tmatrix_sampler.py' 2021-07-13T14:04:20,403 adding 'msmtools/estimation/dense/tmatrix_sampler_test.py' 2021-07-13T14:04:20,404 adding 'msmtools/estimation/dense/transition_matrix.py' 2021-07-13T14:04:20,405 adding 'msmtools/estimation/dense/util.h' 2021-07-13T14:04:20,414 adding 'msmtools/estimation/dense/rnglib/ranlib.c' 2021-07-13T14:04:20,416 adding 'msmtools/estimation/dense/rnglib/ranlib.h' 2021-07-13T14:04:20,419 adding 'msmtools/estimation/dense/rnglib/rnglib.c' 2021-07-13T14:04:20,420 adding 'msmtools/estimation/dense/rnglib/rnglib.h' 2021-07-13T14:04:20,422 adding 'msmtools/estimation/sparse/__init__.py' 2021-07-13T14:04:20,424 adding 'msmtools/estimation/sparse/_mle_trev.c' 2021-07-13T14:04:20,425 adding 'msmtools/estimation/sparse/_mle_trev.h' 2021-07-13T14:04:20,426 adding 'msmtools/estimation/sparse/_mle_trev_given_pi.c' 2021-07-13T14:04:20,428 adding 'msmtools/estimation/sparse/_mle_trev_given_pi.h' 2021-07-13T14:04:20,429 adding 'msmtools/estimation/sparse/connectivity.py' 2021-07-13T14:04:20,430 adding 'msmtools/estimation/sparse/connectivity_test.py' 2021-07-13T14:04:20,432 adding 'msmtools/estimation/sparse/count_matrix.py' 2021-07-13T14:04:20,434 adding 'msmtools/estimation/sparse/effective_counts.py' 2021-07-13T14:04:20,435 adding 'msmtools/estimation/sparse/likelihood.py' 2021-07-13T14:04:20,437 adding 'msmtools/estimation/sparse/likelihood_test.py' 2021-07-13T14:04:20,465 adding 'msmtools/estimation/sparse/mle_trev.c' 2021-07-13T14:04:20,528 adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:20,532 adding 'msmtools/estimation/sparse/mle_trev.pyx' 2021-07-13T14:04:20,558 adding 'msmtools/estimation/sparse/mle_trev_given_pi.c' 2021-07-13T14:04:20,618 adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:20,622 adding 'msmtools/estimation/sparse/mle_trev_given_pi.pyx' 2021-07-13T14:04:20,623 adding 'msmtools/estimation/sparse/prior.py' 2021-07-13T14:04:20,624 adding 'msmtools/estimation/sparse/prior_test.py' 2021-07-13T14:04:20,626 adding 'msmtools/estimation/sparse/transition_matrix.py' 2021-07-13T14:04:20,627 adding 'msmtools/estimation/sparse/transition_matrix_test.py' 2021-07-13T14:04:20,629 adding 'msmtools/estimation/sparse/newton/__init__.py' 2021-07-13T14:04:20,630 adding 'msmtools/estimation/sparse/newton/linsolve.py' 2021-07-13T14:04:20,632 adding 'msmtools/estimation/sparse/newton/linsolve_sparse.py' 2021-07-13T14:04:20,634 adding 'msmtools/estimation/sparse/newton/mle_rev.py' 2021-07-13T14:04:20,635 adding 'msmtools/estimation/sparse/newton/mle_rev_test.py' 2021-07-13T14:04:20,637 adding 'msmtools/estimation/sparse/newton/objective_dense.py' 2021-07-13T14:04:20,682 adding 'msmtools/estimation/sparse/newton/objective_sparse.c' 2021-07-13T14:04:20,844 adding 'msmtools/estimation/sparse/newton/objective_sparse.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:20,852 adding 'msmtools/estimation/sparse/newton/objective_sparse.pyx' 2021-07-13T14:04:20,860 adding 'msmtools/estimation/sparse/newton/testfiles/C.dat' 2021-07-13T14:04:20,864 adding 'msmtools/estimation/tests/__init__.py' 2021-07-13T14:04:20,865 adding 'msmtools/estimation/tests/test_bootstrapping.py' 2021-07-13T14:04:20,866 adding 'msmtools/estimation/tests/test_connectivity.py' 2021-07-13T14:04:20,868 adding 'msmtools/estimation/tests/test_count_matrix.py' 2021-07-13T14:04:20,869 adding 'msmtools/estimation/tests/test_effective_count_matrix.py' 2021-07-13T14:04:20,870 adding 'msmtools/estimation/tests/test_likelihood.py' 2021-07-13T14:04:20,872 adding 'msmtools/estimation/tests/test_mle_trev.py' 2021-07-13T14:04:20,873 adding 'msmtools/estimation/tests/test_mle_trev_given_pi.py' 2021-07-13T14:04:20,875 adding 'msmtools/estimation/tests/test_prior.py' 2021-07-13T14:04:20,876 adding 'msmtools/estimation/tests/test_ratematrix.py' 2021-07-13T14:04:20,877 adding 'msmtools/estimation/tests/test_tmatrix_sampling.py' 2021-07-13T14:04:20,879 adding 'msmtools/estimation/tests/test_transition_matrix.py' 2021-07-13T14:04:20,881 adding 'msmtools/estimation/tests/test_transition_matrix.py.orig' 2021-07-13T14:04:20,883 adding 'msmtools/estimation/tests/testfiles/C_13_lag.dat' 2021-07-13T14:04:20,884 adding 'msmtools/estimation/tests/testfiles/C_13_sliding.dat' 2021-07-13T14:04:20,885 adding 'msmtools/estimation/tests/testfiles/C_1_lag.dat' 2021-07-13T14:04:20,887 adding 'msmtools/estimation/tests/testfiles/C_1_sliding.dat' 2021-07-13T14:04:20,888 adding 'msmtools/estimation/tests/testfiles/C_7_lag.dat' 2021-07-13T14:04:20,889 adding 'msmtools/estimation/tests/testfiles/C_7_sliding.dat' 2021-07-13T14:04:20,899 adding 'msmtools/estimation/tests/testfiles/dtraj.dat' 2021-07-13T14:04:20,928 adding 'msmtools/estimation/tests/testfiles/dwell.npz' 2021-07-13T14:04:20,936 adding 'msmtools/estimation/tests/testfiles/pi.dat' 2021-07-13T14:04:20,938 adding 'msmtools/flux/__init__.py' 2021-07-13T14:04:20,940 adding 'msmtools/flux/api.py' 2021-07-13T14:04:20,942 adding 'msmtools/flux/reactive_flux.py' 2021-07-13T14:04:20,944 adding 'msmtools/flux/reactive_flux_test.py' 2021-07-13T14:04:20,946 adding 'msmtools/flux/dense/__init__.py' 2021-07-13T14:04:20,947 adding 'msmtools/flux/dense/tpt.py' 2021-07-13T14:04:20,949 adding 'msmtools/flux/dense/tpt_test.py' 2021-07-13T14:04:20,950 adding 'msmtools/flux/sparse/__init__.py' 2021-07-13T14:04:20,952 adding 'msmtools/flux/sparse/pathways.py' 2021-07-13T14:04:20,954 adding 'msmtools/flux/sparse/pathways_test.py' 2021-07-13T14:04:20,955 adding 'msmtools/flux/sparse/tpt.py' 2021-07-13T14:04:20,956 adding 'msmtools/flux/sparse/tpt_test.py' 2021-07-13T14:04:20,958 adding 'msmtools/flux/tests/__init__.py' 2021-07-13T14:04:20,960 adding 'msmtools/flux/tests/test_pathways.py' 2021-07-13T14:04:20,961 adding 'msmtools/flux/tests/test_tpt.py' 2021-07-13T14:04:20,963 adding 'msmtools/generation/__init__.py' 2021-07-13T14:04:20,965 adding 'msmtools/generation/api.py' 2021-07-13T14:04:20,967 adding 'msmtools/generation/tests/__init__.py' 2021-07-13T14:04:20,968 adding 'msmtools/generation/tests/test_generation.py' 2021-07-13T14:04:20,970 adding 'msmtools/util/__init__.py' 2021-07-13T14:04:20,972 adding 'msmtools/util/annotators.py' 2021-07-13T14:04:20,973 adding 'msmtools/util/birth_death_chain.py' 2021-07-13T14:04:20,975 adding 'msmtools/util/exceptions.py' 2021-07-13T14:04:21,002 adding 'msmtools/util/kahandot.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:04:21,004 adding 'msmtools/util/numeric.py' 2021-07-13T14:04:21,005 adding 'msmtools/util/sigint_handler.h' 2021-07-13T14:04:21,007 adding 'msmtools/util/statistics.py' 2021-07-13T14:04:21,009 adding 'msmtools/util/types.py' 2021-07-13T14:04:21,011 adding 'msmtools/util/kahandot_src/_kahandot.c' 2021-07-13T14:04:21,013 adding 'msmtools/util/kahandot_src/_kahandot.h' 2021-07-13T14:04:21,034 adding 'msmtools/util/kahandot_src/kahandot.c' 2021-07-13T14:04:21,038 adding 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2021-07-13T14:04:21,056 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.dat' 2021-07-13T14:04:21,057 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.npy' 2021-07-13T14:04:21,058 adding 'msmtools/util/matrix/testfiles/spmatrix_float_reference.dat' 2021-07-13T14:04:21,059 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.dat' 2021-07-13T14:04:21,060 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.npy' 2021-07-13T14:04:21,061 adding 'msmtools/util/matrix/testfiles/spmatrix_int_reference.dat' 2021-07-13T14:04:21,064 adding 'msmtools-1.2.2.dist-info/LICENSE.txt' 2021-07-13T14:04:21,065 adding 'msmtools-1.2.2.dist-info/METADATA' 2021-07-13T14:04:21,066 adding 'msmtools-1.2.2.dist-info/WHEEL' 2021-07-13T14:04:21,067 adding 'msmtools-1.2.2.dist-info/top_level.txt' 2021-07-13T14:04:21,071 adding 'msmtools-1.2.2.dist-info/RECORD' 2021-07-13T14:04:21,108 removing build/bdist.linux-armv7l/wheel 2021-07-13T14:04:21,337 Building wheel for msmtools (setup.py): finished with status 'done' 2021-07-13T14:04:21,372 Created wheel for msmtools: filename=msmtools-1.2.2-cp39-cp39-linux_armv7l.whl size=2257427 sha256=bd2164f07a0829526452161ddcd788d22a78f803394c0f12046b69c31a3c9865 2021-07-13T14:04:21,372 Stored in directory: /tmp/pip-ephem-wheel-cache-b8ebmnot/wheels/7b/ee/63/0916f0e5443bc45e0ea1bf1a49cd7963e78a1b90b87c690841 2021-07-13T14:04:21,389 Successfully built msmtools 2021-07-13T14:04:21,465 Removed build tracker: '/tmp/pip-req-tracker-2p5xjdcn'