2021-07-13T14:14:41,634 Created temporary directory: /tmp/pip-ephem-wheel-cache-vt254j2p 2021-07-13T14:14:41,638 Created temporary directory: /tmp/pip-req-tracker-l8hg5mji 2021-07-13T14:14:41,638 Initialized build tracking at /tmp/pip-req-tracker-l8hg5mji 2021-07-13T14:14:41,639 Created build tracker: /tmp/pip-req-tracker-l8hg5mji 2021-07-13T14:14:41,639 Entered build tracker: /tmp/pip-req-tracker-l8hg5mji 2021-07-13T14:14:41,639 Created temporary directory: /tmp/pip-wheel-bf4fzu6l 2021-07-13T14:14:41,689 1 location(s) to search for versions of sshmm: 2021-07-13T14:14:41,689 * https://pypi.org/simple/sshmm/ 2021-07-13T14:14:41,690 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/ 2021-07-13T14:14:41,691 Getting page https://pypi.org/simple/sshmm/ 2021-07-13T14:14:41,692 Found index url https://pypi.org/simple 2021-07-13T14:14:41,892 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/) 2021-07-13T14:14:41,893 Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1 2021-07-13T14:14:41,893 Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2 2021-07-13T14:14:41,894 Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3 2021-07-13T14:14:41,894 Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4 2021-07-13T14:14:41,894 Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0 2021-07-13T14:14:41,895 Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1 2021-07-13T14:14:41,895 Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2 2021-07-13T14:14:41,896 Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4 2021-07-13T14:14:41,896 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/) 2021-07-13T14:14:41,896 Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5 2021-07-13T14:14:41,897 Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6 2021-07-13T14:14:41,897 Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7 2021-07-13T14:14:41,898 Skipping link: not a file: https://pypi.org/simple/sshmm/ 2021-07-13T14:14:41,900 Given no hashes to check 1 links for project 'sshmm': discarding no candidates 2021-07-13T14:14:41,922 Collecting sshmm==1.0.7 2021-07-13T14:14:41,923 Created temporary directory: /tmp/pip-unpack-fspecjzq 2021-07-13T14:14:42,125 Downloading sshmm-1.0.7.tar.gz (105 kB) 2021-07-13T14:14:42,254 Added sshmm==1.0.7 from https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 to build tracker '/tmp/pip-req-tracker-l8hg5mji' 2021-07-13T14:14:42,255 Running setup.py (path:/tmp/pip-wheel-bf4fzu6l/sshmm_62e2adbf70b945fd99a3076b056ead27/setup.py) egg_info for package sshmm 2021-07-13T14:14:42,256 Created temporary directory: /tmp/pip-pip-egg-info-faabd4b2 2021-07-13T14:14:42,257 Running command python setup.py egg_info 2021-07-13T14:14:43,564 running egg_info 2021-07-13T14:14:43,567 creating /tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info 2021-07-13T14:14:43,568 writing /tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/PKG-INFO 2021-07-13T14:14:43,571 writing dependency_links to /tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/dependency_links.txt 2021-07-13T14:14:43,572 writing requirements to /tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/requires.txt 2021-07-13T14:14:43,573 writing top-level names to /tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/top_level.txt 2021-07-13T14:14:43,575 writing manifest file '/tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/SOURCES.txt' 2021-07-13T14:14:43,969 reading manifest file '/tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/SOURCES.txt' 2021-07-13T14:14:43,979 writing manifest file '/tmp/pip-pip-egg-info-faabd4b2/sshmm.egg-info/SOURCES.txt' 2021-07-13T14:14:44,075 Source in /tmp/pip-wheel-bf4fzu6l/sshmm_62e2adbf70b945fd99a3076b056ead27 has version 1.0.7, which satisfies requirement sshmm==1.0.7 from https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 2021-07-13T14:14:44,076 Removed sshmm==1.0.7 from https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 from build tracker '/tmp/pip-req-tracker-l8hg5mji' 2021-07-13T14:14:44,081 Created temporary directory: /tmp/pip-unpack-uaisvedm 2021-07-13T14:14:44,081 Building wheels for collected packages: sshmm 2021-07-13T14:14:44,086 Created temporary directory: /tmp/pip-wheel-dhuqn542 2021-07-13T14:14:44,086 Building wheel for sshmm (setup.py): started 2021-07-13T14:14:44,087 Destination directory: /tmp/pip-wheel-dhuqn542 2021-07-13T14:14:44,087 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bf4fzu6l/sshmm_62e2adbf70b945fd99a3076b056ead27/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bf4fzu6l/sshmm_62e2adbf70b945fd99a3076b056ead27/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-dhuqn542 2021-07-13T14:14:45,400 running bdist_wheel 2021-07-13T14:14:45,586 running build 2021-07-13T14:14:45,586 running build_py 2021-07-13T14:14:45,734 creating build 2021-07-13T14:14:45,735 creating build/lib.linux-armv7l-3.9 2021-07-13T14:14:45,735 creating build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,737 copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,739 copying sshmm/log.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,741 copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,743 copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,744 copying sshmm/SimpleQueue.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,746 copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,748 copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,750 copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,753 copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,755 copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,759 creating build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T14:14:45,760 copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T14:14:45,764 copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T14:14:45,767 copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T14:14:45,770 copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T14:14:45,774 copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-13T14:14:45,779 running build_ext 2021-07-13T14:14:45,786 building 'cEstimate' extension 2021-07-13T14:14:45,787 creating build/temp.linux-armv7l-3.9 2021-07-13T14:14:45,787 creating build/temp.linux-armv7l-3.9/sshmm 2021-07-13T14:14:45,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o 2021-07-13T14:14:46,308 sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’: 2021-07-13T14:14:46,309 sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-13T14:14:46,310 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-13T14:14:46,310 | ^~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,311 sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-13T14:14:46,311 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-13T14:14:46,311 | ^ 2021-07-13T14:14:46,333 sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T14:14:46,335 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,335 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,335 | ^ 2021-07-13T14:14:46,336 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,337 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,337 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,337 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,337 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,338 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,339 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,339 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,339 | ^ 2021-07-13T14:14:46,340 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,340 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,340 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,340 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T14:14:46,340 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T14:14:46,341 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,341 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,341 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,341 | ^ 2021-07-13T14:14:46,341 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,342 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,342 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,342 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,342 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,342 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,343 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,343 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,343 | ^ 2021-07-13T14:14:46,343 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,343 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,343 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,344 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,344 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,344 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,344 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,344 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,345 | ^ 2021-07-13T14:14:46,345 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,345 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,345 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,345 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T14:14:46,345 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T14:14:46,346 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,346 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,346 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,346 | ^ 2021-07-13T14:14:46,346 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,347 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,347 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,347 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,347 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,347 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,348 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,348 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,348 | ^ 2021-07-13T14:14:46,349 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,349 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,349 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,349 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,349 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,350 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,350 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,350 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,350 | ^ 2021-07-13T14:14:46,350 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,351 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,351 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,351 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T14:14:46,351 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T14:14:46,352 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,352 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,352 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,352 | ^ 2021-07-13T14:14:46,352 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,353 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,353 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,353 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,353 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,353 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,354 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,354 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,354 | ^ 2021-07-13T14:14:46,354 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,354 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,355 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,355 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,355 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,355 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,356 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,356 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,356 | ^ 2021-07-13T14:14:46,356 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,356 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,357 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,357 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T14:14:46,357 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T14:14:46,357 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:46,358 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T14:14:46,358 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T14:14:46,358 | ^ 2021-07-13T14:14:46,358 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T14:14:46,359 from /usr/include/python3.9/Python.h:97, 2021-07-13T14:14:46,359 from sshmm/cEstimate.c:24: 2021-07-13T14:14:46,359 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T14:14:46,359 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T14:14:46,360 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T14:14:47,658 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so 2021-07-13T14:14:47,794 running build_scripts 2021-07-13T14:14:47,795 creating build/scripts-3.9 2021-07-13T14:14:47,796 copying and adjusting bin/preprocess_dataset -> build/scripts-3.9 2021-07-13T14:14:47,800 copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9 2021-07-13T14:14:47,802 copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9 2021-07-13T14:14:47,804 copying and adjusting bin/draw_model_graph -> build/scripts-3.9 2021-07-13T14:14:47,805 changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755 2021-07-13T14:14:47,806 changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755 2021-07-13T14:14:47,806 changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755 2021-07-13T14:14:47,806 changing mode of build/scripts-3.9/draw_model_graph from 644 to 755 2021-07-13T14:14:47,817 installing to build/bdist.linux-armv7l/wheel 2021-07-13T14:14:47,817 running install 2021-07-13T14:14:47,819 running install_lib 2021-07-13T14:14:47,824 creating build/bdist.linux-armv7l 2021-07-13T14:14:47,825 creating build/bdist.linux-armv7l/wheel 2021-07-13T14:14:47,827 creating build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,828 copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,830 copying build/lib.linux-armv7l-3.9/sshmm/log.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,833 copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,835 copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,837 copying build/lib.linux-armv7l-3.9/sshmm/SimpleQueue.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,839 copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,841 copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,844 creating build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T14:14:47,845 copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T14:14:47,848 copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T14:14:47,851 copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T14:14:47,853 copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T14:14:47,856 copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-13T14:14:47,859 copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,863 copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,866 copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-13T14:14:47,869 copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-13T14:14:47,874 running install_egg_info 2021-07-13T14:14:47,900 running egg_info 2021-07-13T14:14:47,900 writing sshmm.egg-info/PKG-INFO 2021-07-13T14:14:47,903 writing dependency_links to sshmm.egg-info/dependency_links.txt 2021-07-13T14:14:47,904 writing requirements to sshmm.egg-info/requires.txt 2021-07-13T14:14:47,905 writing top-level names to sshmm.egg-info/top_level.txt 2021-07-13T14:14:47,939 reading manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-13T14:14:47,946 writing manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-13T14:14:47,948 Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.7-py3.9.egg-info 2021-07-13T14:14:47,963 running install_scripts 2021-07-13T14:14:48,026 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data 2021-07-13T14:14:48,027 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts 2021-07-13T14:14:48,028 copying build/scripts-3.9/draw_model_graph -> build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts 2021-07-13T14:14:48,030 copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts 2021-07-13T14:14:48,032 copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts 2021-07-13T14:14:48,035 copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts 2021-07-13T14:14:48,037 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts/draw_model_graph to 755 2021-07-13T14:14:48,037 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts/batch_seqstructhmm to 755 2021-07-13T14:14:48,038 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts/preprocess_dataset to 755 2021-07-13T14:14:48,038 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.7.data/scripts/train_seqstructhmm to 755 2021-07-13T14:14:48,070 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.7.dist-info/WHEEL 2021-07-13T14:14:48,073 creating '/tmp/pip-wheel-dhuqn542/sshmm-1.0.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T14:14:48,093 adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T14:14:48,100 adding 'sshmm/MyHMM.py' 2021-07-13T14:14:48,102 adding 'sshmm/SimpleQueue.py' 2021-07-13T14:14:48,103 adding 'sshmm/__init__.py' 2021-07-13T14:14:48,104 adding 'sshmm/log.py' 2021-07-13T14:14:48,106 adding 'sshmm/pwm.py' 2021-07-13T14:14:48,107 adding 'sshmm/seq_hmm.py' 2021-07-13T14:14:48,110 adding 'sshmm/seqstructhmm.py' 2021-07-13T14:14:48,112 adding 'sshmm/sequence_container.py' 2021-07-13T14:14:48,113 adding 'sshmm/setup.py' 2021-07-13T14:14:48,114 adding 'sshmm/structure_prediction.py' 2021-07-13T14:14:48,118 adding 'sshmm/img/A.png' 2021-07-13T14:14:48,120 adding 'sshmm/img/C.png' 2021-07-13T14:14:48,123 adding 'sshmm/img/G.png' 2021-07-13T14:14:48,124 adding 'sshmm/img/T.png' 2021-07-13T14:14:48,126 adding 'sshmm/img/U.png' 2021-07-13T14:14:48,129 adding 'sshmm-1.0.7.data/scripts/batch_seqstructhmm' 2021-07-13T14:14:48,131 adding 'sshmm-1.0.7.data/scripts/draw_model_graph' 2021-07-13T14:14:48,133 adding 'sshmm-1.0.7.data/scripts/preprocess_dataset' 2021-07-13T14:14:48,135 adding 'sshmm-1.0.7.data/scripts/train_seqstructhmm' 2021-07-13T14:14:48,137 adding 'sshmm-1.0.7.dist-info/METADATA' 2021-07-13T14:14:48,138 adding 'sshmm-1.0.7.dist-info/WHEEL' 2021-07-13T14:14:48,139 adding 'sshmm-1.0.7.dist-info/top_level.txt' 2021-07-13T14:14:48,140 adding 'sshmm-1.0.7.dist-info/RECORD' 2021-07-13T14:14:48,144 removing build/bdist.linux-armv7l/wheel 2021-07-13T14:14:48,255 Building wheel for sshmm (setup.py): finished with status 'done' 2021-07-13T14:14:48,261 Created wheel for sshmm: filename=sshmm-1.0.7-cp39-cp39-linux_armv7l.whl size=130752 sha256=a032422fcb7266c6eabcd518fb52560b0999d1236d68b843c3188ba8584d0215 2021-07-13T14:14:48,261 Stored in directory: /tmp/pip-ephem-wheel-cache-vt254j2p/wheels/f9/c0/95/560ebf8dd8f37328888f9e699c655335140c27e7ce013671d1 2021-07-13T14:14:48,277 Successfully built sshmm 2021-07-13T14:14:48,286 Removed build tracker: '/tmp/pip-req-tracker-l8hg5mji'