2021-07-13T14:40:14,059 Created temporary directory: /tmp/pip-ephem-wheel-cache-9ng3nmhc
2021-07-13T14:40:14,062 Created temporary directory: /tmp/pip-req-tracker-qgadibeg
2021-07-13T14:40:14,063 Initialized build tracking at /tmp/pip-req-tracker-qgadibeg
2021-07-13T14:40:14,063 Created build tracker: /tmp/pip-req-tracker-qgadibeg
2021-07-13T14:40:14,063 Entered build tracker: /tmp/pip-req-tracker-qgadibeg
2021-07-13T14:40:14,064 Created temporary directory: /tmp/pip-wheel-cyemz00u
2021-07-13T14:40:14,093 1 location(s) to search for versions of clusgeo:
2021-07-13T14:40:14,093 * https://pypi.org/simple/clusgeo/
2021-07-13T14:40:14,094 Fetching project page and analyzing links: https://pypi.org/simple/clusgeo/
2021-07-13T14:40:14,094 Getting page https://pypi.org/simple/clusgeo/
2021-07-13T14:40:14,096 Found index url https://pypi.org/simple
2021-07-13T14:40:14,190   Found link https://files.pythonhosted.org/packages/be/51/4f5f9e0ee19752e9513404ed346b86a2549e72730a07a446479f7686f3e7/clusgeo-3.0.0.tar.gz#sha256=73fec81eecaf9cc68e8850098c74ecb35b6acbca34c42131425197585316b305 (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 3.0.0
2021-07-13T14:40:14,191   Found link https://files.pythonhosted.org/packages/5f/f2/fd3dc1a466639d36b30855c479764cae86cf4a17cc7726767857f2fdc66d/clusgeo-3.0.1.tar.gz#sha256=57017504bd3f118ec8e93f43a588e6b6b11fcb459f121dad02e766a2160c9b98 (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 3.0.1
2021-07-13T14:40:14,191   Found link https://files.pythonhosted.org/packages/e6/9c/2d069ce91a0013515dee0876fef4cc3f92747abadc95214ee1f9130d3d2f/clusgeo-3.0.2.tar.gz#sha256=84b739fb6306cc159d18677da7ba24e015a5851f789a53d90c77cfc0cd21a438 (from https://pypi.org/simple/clusgeo/), version: 3.0.2
2021-07-13T14:40:14,192   Found link https://files.pythonhosted.org/packages/be/2b/01029b0128284157893d9ce8cd9beab576526154c55e047ac9812f2f9e50/clusgeo-3.0.3.tar.gz#sha256=c294e0151e543d713458c6344515c221812082620dd1cb4cf871437807b355f0 (from https://pypi.org/simple/clusgeo/), version: 3.0.3
2021-07-13T14:40:14,192   Found link https://files.pythonhosted.org/packages/08/b3/5fbb592896d50172c8d42b368decb9a6cbfc8d3d6828a4df2e2e5b966205/clusgeo-3.0.4.tar.gz#sha256=1f56f2394c1e22227cccf1cf89fb2ed2d9ac7bdfa79e2d44c16d1d3864b83e3a (from https://pypi.org/simple/clusgeo/), version: 3.0.4
2021-07-13T14:40:14,192   Found link https://files.pythonhosted.org/packages/3c/da/6cd5e94d0ddc08a156ee0b3baa7991f5e4618259af2569846723d1799ec4/clusgeo-3.0.5.tar.gz#sha256=ad265b0639ed4c035c075e1021bfb4bb605f265a2f6b46081b1e443e42e28cd9 (from https://pypi.org/simple/clusgeo/), version: 3.0.5
2021-07-13T14:40:14,192   Found link https://files.pythonhosted.org/packages/42/6a/38c2efc35bf20ac4a3e9bee6ba7f3d13b7d250ac97e06e9496ef8050f341/clusgeo-3.0.6.tar.gz#sha256=d26c6c06a46be3bbe737e3b5d06ba9263e47d539efb9311d3868acdfbac257bb (from https://pypi.org/simple/clusgeo/), version: 3.0.6
2021-07-13T14:40:14,193   Found link https://files.pythonhosted.org/packages/db/bd/aa1271fe51883a9714005fcc8eb6814e8df5daedb0a596fc84c9d1941768/clusgeo-3.0.7.tar.gz#sha256=887d6e848adcf746b4091bc97a3562e36e9aa984cc4c9a5dabd5d0641e720923 (from https://pypi.org/simple/clusgeo/), version: 3.0.7
2021-07-13T14:40:14,193   Found link https://files.pythonhosted.org/packages/a5/a2/0c666d0426ab4060f60e7a2ff33b27c79bdffc9b760807182016266d7a18/clusgeo-4.0.0.tar.gz#sha256=c14a3949f3e648f89afc43d479434a238dbf8c4c985c59e7fc18f242efd4f04d (from https://pypi.org/simple/clusgeo/), version: 4.0.0
2021-07-13T14:40:14,193   Found link https://files.pythonhosted.org/packages/7c/fb/0a2bc7ab3d0e19b7d5ccb23133c19eb4ee0ace468fa8cb3b2198d106f3b7/clusgeo-4.0.1.tar.gz#sha256=20c5dde16c650cffd71fdd8829da428222a423412ef04bf1da9e717fd76abdb7 (from https://pypi.org/simple/clusgeo/), version: 4.0.1
2021-07-13T14:40:14,193   Found link https://files.pythonhosted.org/packages/4d/02/2b57407a2f1ea0671aa40b964de7614a137f16b2be254059af1e9d7e9f76/clusgeo-4.0.2.tar.gz#sha256=28b18fcb0b2913a78b9950336001b6350efec0e046ed8f736355d4ff1f092297 (from https://pypi.org/simple/clusgeo/), version: 4.0.2
2021-07-13T14:40:14,194   Found link https://files.pythonhosted.org/packages/40/87/91ae21f2af7dc49cd5b08b6b1c481d8395a21c63f8e940b741bed40f4afe/clusgeo-4.0.3.tar.gz#sha256=d62304ef63a7111f77948c1a0bdf0cb7f24fa34b16daddf359dd96bc20b1ce04 (from https://pypi.org/simple/clusgeo/), version: 4.0.3
2021-07-13T14:40:14,194   Found link https://files.pythonhosted.org/packages/07/2b/ab268121ba11bacdc9f77198a2a771e121f382669526049aeec0d32df3e3/clusgeo-4.1.0.tar.gz#sha256=93f3339074ce99267baf2c17a0896ffef5fcd6366d8f311acb42757e4aef20ea (from https://pypi.org/simple/clusgeo/) (requires-python:>=2.2, <4), version: 4.1.0
2021-07-13T14:40:14,195 Skipping link: not a file: https://pypi.org/simple/clusgeo/
2021-07-13T14:40:14,214 Given no hashes to check 1 links for project 'clusgeo': discarding no candidates
2021-07-13T14:40:14,233 Collecting clusgeo==3.0.6
2021-07-13T14:40:14,235   Created temporary directory: /tmp/pip-unpack-6fjw107c
2021-07-13T14:40:14,419   Downloading clusgeo-3.0.6.tar.gz (6.8 kB)
2021-07-13T14:40:14,461   Added clusgeo==3.0.6 from https://files.pythonhosted.org/packages/42/6a/38c2efc35bf20ac4a3e9bee6ba7f3d13b7d250ac97e06e9496ef8050f341/clusgeo-3.0.6.tar.gz#sha256=d26c6c06a46be3bbe737e3b5d06ba9263e47d539efb9311d3868acdfbac257bb to build tracker '/tmp/pip-req-tracker-qgadibeg'
2021-07-13T14:40:14,462     Running setup.py (path:/tmp/pip-wheel-cyemz00u/clusgeo_908cb53c4ce84954aebb264f7104ada8/setup.py) egg_info for package clusgeo
2021-07-13T14:40:14,462     Created temporary directory: /tmp/pip-pip-egg-info-ib6_jd5p
2021-07-13T14:40:14,463     Running command python setup.py egg_info
2021-07-13T14:40:15,628     running egg_info
2021-07-13T14:40:15,630     creating /tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info
2021-07-13T14:40:15,631     writing /tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/PKG-INFO
2021-07-13T14:40:15,633     writing dependency_links to /tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/dependency_links.txt
2021-07-13T14:40:15,635     writing requirements to /tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/requires.txt
2021-07-13T14:40:15,636     writing top-level names to /tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/top_level.txt
2021-07-13T14:40:15,637     writing manifest file '/tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/SOURCES.txt'
2021-07-13T14:40:15,840     reading manifest file '/tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/SOURCES.txt'
2021-07-13T14:40:15,841     reading manifest template 'MANIFEST.in'
2021-07-13T14:40:15,842     adding license file 'LICENSE'
2021-07-13T14:40:15,845     writing manifest file '/tmp/pip-pip-egg-info-ib6_jd5p/clusgeo.egg-info/SOURCES.txt'
2021-07-13T14:40:15,926   Source in /tmp/pip-wheel-cyemz00u/clusgeo_908cb53c4ce84954aebb264f7104ada8 has version 3.0.6, which satisfies requirement clusgeo==3.0.6 from https://files.pythonhosted.org/packages/42/6a/38c2efc35bf20ac4a3e9bee6ba7f3d13b7d250ac97e06e9496ef8050f341/clusgeo-3.0.6.tar.gz#sha256=d26c6c06a46be3bbe737e3b5d06ba9263e47d539efb9311d3868acdfbac257bb
2021-07-13T14:40:15,927   Removed clusgeo==3.0.6 from https://files.pythonhosted.org/packages/42/6a/38c2efc35bf20ac4a3e9bee6ba7f3d13b7d250ac97e06e9496ef8050f341/clusgeo-3.0.6.tar.gz#sha256=d26c6c06a46be3bbe737e3b5d06ba9263e47d539efb9311d3868acdfbac257bb from build tracker '/tmp/pip-req-tracker-qgadibeg'
2021-07-13T14:40:15,933 Created temporary directory: /tmp/pip-unpack-6bd1n_76
2021-07-13T14:40:15,933 Building wheels for collected packages: clusgeo
2021-07-13T14:40:15,937   Created temporary directory: /tmp/pip-wheel-oxxu5kbt
2021-07-13T14:40:15,938   Building wheel for clusgeo (setup.py): started
2021-07-13T14:40:15,938   Destination directory: /tmp/pip-wheel-oxxu5kbt
2021-07-13T14:40:15,939   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cyemz00u/clusgeo_908cb53c4ce84954aebb264f7104ada8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cyemz00u/clusgeo_908cb53c4ce84954aebb264f7104ada8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-oxxu5kbt
2021-07-13T14:40:17,102   running bdist_wheel
2021-07-13T14:40:17,261   running build
2021-07-13T14:40:17,261   running build_ext
2021-07-13T14:40:17,266   building 'lib.libclusgeo3' extension
2021-07-13T14:40:17,267   creating build
2021-07-13T14:40:17,267   creating build/temp.linux-armv7l-3.9
2021-07-13T14:40:17,268   creating build/temp.linux-armv7l-3.9/src
2021-07-13T14:40:17,268   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/clusGeo3.c -o build/temp.linux-armv7l-3.9/src/clusGeo3.o -O3 -std=c99
2021-07-13T14:40:17,376   src/clusGeo3.c: In function ‘findSurf’:
2021-07-13T14:40:17,377   src/clusGeo3.c:56:7: warning: unused variable ‘maxAtomIndx’ [-Wunused-variable]
2021-07-13T14:40:17,377      56 |   int maxAtomIndx;  double minVal;  int minAtomsI;
2021-07-13T14:40:17,377         |       ^~~~~~~~~~~
2021-07-13T14:40:17,377   src/clusGeo3.c:55:8: warning: unused variable ‘isSurf’ [-Wunused-variable]
2021-07-13T14:40:17,377      55 |   int* isSurf = (int*) malloc(sizeof(int)*size);
2021-07-13T14:40:17,378         |        ^~~~~~
2021-07-13T14:40:17,378   src/clusGeo3.c:53:10: warning: unused variable ‘xPosInit’ [-Wunused-variable]
2021-07-13T14:40:17,378      53 |   double xPosInit = xPos; double yPosInit = yPos; double zPosInit = zPos;
2021-07-13T14:40:17,378         |          ^~~~~~~~
2021-07-13T14:40:17,379   src/clusGeo3.c: In function ‘getEta1’:
2021-07-13T14:40:17,379   src/clusGeo3.c:92:10: warning: unused variable ‘distBuf’ [-Wunused-variable]
2021-07-13T14:40:17,379      92 |   double distBuf;
2021-07-13T14:40:17,379         |          ^~~~~~~
2021-07-13T14:40:17,511   src/clusGeo3.c: In function ‘findSurf’:
2021-07-13T14:40:17,511   src/clusGeo3.c:68:36: warning: ‘minAtomsI’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-13T14:40:17,511      68 |             surfAtomsBuff[marcher] = minAtomsI;
2021-07-13T14:40:17,511         |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2021-07-13T14:40:18,150   creating build/lib.linux-armv7l-3.9
2021-07-13T14:40:18,150   creating build/lib.linux-armv7l-3.9/lib
2021-07-13T14:40:18,151   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/clusGeo3.o -lm -o build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so
2021-07-13T14:40:18,289   installing to build/bdist.linux-armv7l/wheel
2021-07-13T14:40:18,290   running install
2021-07-13T14:40:18,291   running install_lib
2021-07-13T14:40:18,295   creating build/bdist.linux-armv7l
2021-07-13T14:40:18,295   creating build/bdist.linux-armv7l/wheel
2021-07-13T14:40:18,297   creating build/bdist.linux-armv7l/wheel/lib
2021-07-13T14:40:18,298   copying build/lib.linux-armv7l-3.9/lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/lib
2021-07-13T14:40:18,301   running install_egg_info
2021-07-13T14:40:18,323   running egg_info
2021-07-13T14:40:18,324   writing clusgeo.egg-info/PKG-INFO
2021-07-13T14:40:18,326   writing dependency_links to clusgeo.egg-info/dependency_links.txt
2021-07-13T14:40:18,327   writing requirements to clusgeo.egg-info/requires.txt
2021-07-13T14:40:18,328   writing top-level names to clusgeo.egg-info/top_level.txt
2021-07-13T14:40:18,354   reading manifest file 'clusgeo.egg-info/SOURCES.txt'
2021-07-13T14:40:18,357   reading manifest template 'MANIFEST.in'
2021-07-13T14:40:18,358   adding license file 'LICENSE'
2021-07-13T14:40:18,361   writing manifest file 'clusgeo.egg-info/SOURCES.txt'
2021-07-13T14:40:18,362   Copying clusgeo.egg-info to build/bdist.linux-armv7l/wheel/clusgeo-3.0.6-py3.9.egg-info
2021-07-13T14:40:18,373   running install_scripts
2021-07-13T14:40:18,459   creating build/bdist.linux-armv7l/wheel/clusgeo-3.0.6.dist-info/WHEEL
2021-07-13T14:40:18,462   creating '/tmp/pip-wheel-oxxu5kbt/clusgeo-3.0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T14:40:18,470   adding 'lib/libclusgeo3.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T14:40:18,472   adding 'clusgeo-3.0.6.dist-info/LICENSE'
2021-07-13T14:40:18,473   adding 'clusgeo-3.0.6.dist-info/METADATA'
2021-07-13T14:40:18,475   adding 'clusgeo-3.0.6.dist-info/WHEEL'
2021-07-13T14:40:18,475   adding 'clusgeo-3.0.6.dist-info/top_level.txt'
2021-07-13T14:40:18,476   adding 'clusgeo-3.0.6.dist-info/RECORD'
2021-07-13T14:40:18,478   removing build/bdist.linux-armv7l/wheel
2021-07-13T14:40:18,564   Building wheel for clusgeo (setup.py): finished with status 'done'
2021-07-13T14:40:18,566   Created wheel for clusgeo: filename=clusgeo-3.0.6-cp39-cp39-linux_armv7l.whl size=19293 sha256=84a8071d8fcf4da525f4d3727aa95cbdb5c0d7dd620a96a43c4fc00a62780c63
2021-07-13T14:40:18,567   Stored in directory: /tmp/pip-ephem-wheel-cache-9ng3nmhc/wheels/66/49/4c/ecfcc3fd8d25f7e7069e88ff84ea6a94a9428dae50327225a8
2021-07-13T14:40:18,576 Successfully built clusgeo
2021-07-13T14:40:18,579 Removed build tracker: '/tmp/pip-req-tracker-qgadibeg'