2021-07-13T17:09:10,564 Created temporary directory: /tmp/pip-ephem-wheel-cache-chcfs1it
2021-07-13T17:09:10,567 Created temporary directory: /tmp/pip-req-tracker-9obxxm58
2021-07-13T17:09:10,567 Initialized build tracking at /tmp/pip-req-tracker-9obxxm58
2021-07-13T17:09:10,567 Created build tracker: /tmp/pip-req-tracker-9obxxm58
2021-07-13T17:09:10,567 Entered build tracker: /tmp/pip-req-tracker-9obxxm58
2021-07-13T17:09:10,568 Created temporary directory: /tmp/pip-wheel-7b4ag4he
2021-07-13T17:09:10,598 1 location(s) to search for versions of phydms:
2021-07-13T17:09:10,598 * https://pypi.org/simple/phydms/
2021-07-13T17:09:10,598 Fetching project page and analyzing links: https://pypi.org/simple/phydms/
2021-07-13T17:09:10,599 Getting page https://pypi.org/simple/phydms/
2021-07-13T17:09:10,600 Found index url https://pypi.org/simple
2021-07-13T17:09:10,799   Found link https://files.pythonhosted.org/packages/11/8b/924f010cb273c3d58b5ebca589d32044b7d38f2355a3e4018596a926b5a3/phydms-1.0.0.tar.gz#sha256=28f8fe31062699196a4dbacf76d3ff511730d04cccd0fe7c337b6b4c14dfa023 (from https://pypi.org/simple/phydms/), version: 1.0.0
2021-07-13T17:09:10,800   Found link https://files.pythonhosted.org/packages/6f/19/f8d04c628f5d06cb911a58cfa6b53988298500bdaeea689695a1d1801595/phydms-1.0.1.tar.gz#sha256=4a5a2ccb4f4d64db9a8ff6211653a2c27e6594995dacafda80a2f09464dc3924 (from https://pypi.org/simple/phydms/), version: 1.0.1
2021-07-13T17:09:10,800   Found link https://files.pythonhosted.org/packages/7a/9e/d72b19e0423c6347f7d2a3ee341e6c7d95762391a5f4727c71c55cd36315/phydms-1.0.2.tar.gz#sha256=0a9f45574b40c4889273d21e15d1f409a81b53e7b92f46233dde09f820eb36d9 (from https://pypi.org/simple/phydms/), version: 1.0.2
2021-07-13T17:09:10,800   Found link https://files.pythonhosted.org/packages/97/04/aff84721a0b84aaf193e5cd4e03afc481959566ed1d89903d6157f682bbf/phydms-1.1.0.tar.gz#sha256=ee376ab454e30059e87c6045a2b355fabd4870be4007082a55c82bae21e5fe7b (from https://pypi.org/simple/phydms/), version: 1.1.0
2021-07-13T17:09:10,801   Found link https://files.pythonhosted.org/packages/b8/a4/9a766d44bdddb39d4b27970590671065ccaad8bf6f2c103d4cba4860e6e6/phydms-1.2.0.tar.gz#sha256=594107afd6b2cc29701093c4b3a88da9901e9aa316222f61d9e325fa695d44ce (from https://pypi.org/simple/phydms/), version: 1.2.0
2021-07-13T17:09:10,801   Found link https://files.pythonhosted.org/packages/89/8d/0fda131f5a9c10f1b0c5f9a07d45aa5a488c6504b2991acf6bd43cee0087/phydms-1.2.1.tar.gz#sha256=c3487b938aa93d21b5b478e6e9124efb375b730c960848cf3f0d7725edfaa352 (from https://pypi.org/simple/phydms/), version: 1.2.1
2021-07-13T17:09:10,801   Found link https://files.pythonhosted.org/packages/cf/1d/bcc6f877c3129cd15943bcdaaac04707799d698827a2a171c30c94854d26/phydms-1.2.2.tar.gz#sha256=56117e112039a4cb778b76572d46780ba96cb5b9eaec05c4aad5bda8ec4f4883 (from https://pypi.org/simple/phydms/), version: 1.2.2
2021-07-13T17:09:10,802   Found link https://files.pythonhosted.org/packages/af/f0/7be30b868a70e2d56f14e956dc89fa29fb6423ffc40cc5ea2a4b7e5a1da3/phydms-1.2.3.tar.gz#sha256=a4d8bba85902503840486a2c4a54fd15231f4367fde00a96e32f4739c17908a5 (from https://pypi.org/simple/phydms/), version: 1.2.3
2021-07-13T17:09:10,802   Found link https://files.pythonhosted.org/packages/bc/6a/8359a5c0574156f52584ca5af73006ca00ad22ada8e0a5043045ad2351a8/phydms-1.2.4.tar.gz#sha256=15de1268b9ccff63b8d5dce1af42fce0b74d785ef55c740f9f9884cfcb00568e (from https://pypi.org/simple/phydms/), version: 1.2.4
2021-07-13T17:09:10,802   Found link https://files.pythonhosted.org/packages/95/94/83ad1639e1b4f5443f4f87a02808f1baa343443b3bc6bd56d1dfd62101bd/phydms-1.2.5.tar.gz#sha256=490d6d14bf61a156815f0301e010d972d4c6661d8dfc0ba88baae1f7a752cc49 (from https://pypi.org/simple/phydms/), version: 1.2.5
2021-07-13T17:09:10,803   Found link https://files.pythonhosted.org/packages/95/4a/69ec601ce4654d6c91c614e12122a3e1ba1b7a02275e38c0aaa15246cb64/phydms-1.3.0.tar.gz#sha256=06ed1fad6a3b0c1ad9be57ddb785b0ed570fda7fd22e669de49d6a1a1b28eb00 (from https://pypi.org/simple/phydms/), version: 1.3.0
2021-07-13T17:09:10,803   Found link https://files.pythonhosted.org/packages/c9/26/1663b6f3005d5e2c280ebaa2bca84251710ea7eb81a63ce2ef6d753577ae/phydms-2.0.0.tar.gz#sha256=1db0c03642c75eede6cdbf64a102c45c3a5ab04999e2e75d049a3f97e2a7b0fa (from https://pypi.org/simple/phydms/), version: 2.0.0
2021-07-13T17:09:10,803   Found link https://files.pythonhosted.org/packages/3d/a6/7f55eca9d765e342a1726e6ec8e2ad1595b3d1d80eeb83bba8d6c7774db9/phydms-2.0.1.tar.gz#sha256=fea9fef5140294461020f830dbf1902d06291fc9d7278b4b865fc8e4c3942dba (from https://pypi.org/simple/phydms/), version: 2.0.1
2021-07-13T17:09:10,804   Found link https://files.pythonhosted.org/packages/21/ba/99e6c7d184abf29f1948f423c8d4f3131b547570e066fec231719fbb1891/phydms-2.0.2.tar.gz#sha256=d47a40f8c600c2936fbf2e78727fbf4e3e528b9e64b978930cc597159d1d9291 (from https://pypi.org/simple/phydms/), version: 2.0.2
2021-07-13T17:09:10,804   Found link https://files.pythonhosted.org/packages/a8/8e/91ee2e972a9837b0eb948696887c690c9dba13fc51b7cfddd755a69a9ebe/phydms-2.0.3.tar.gz#sha256=3c7e37c6c8ee6c8ecd0d619718c7c809e61c83b23465185e1d7e860c646c74e5 (from https://pypi.org/simple/phydms/), version: 2.0.3
2021-07-13T17:09:10,804   Found link https://files.pythonhosted.org/packages/39/9a/79c9350297cd356d5b85f21ae368af4c2f6feb579e464a26b4f3033044e1/phydms-2.0.4.tar.gz#sha256=42051e72175f6093b44323a97bb3435d7fdcd407951cae237c22b12910c8b664 (from https://pypi.org/simple/phydms/), version: 2.0.4
2021-07-13T17:09:10,804   Found link https://files.pythonhosted.org/packages/5f/20/e6b2886824048f55f96c74b582635240fe379901fcc2ae9cc16d805e1e67/phydms-2.0.5.tar.gz#sha256=8c6c1d69ceef92ba113b49aed6bc62b9fd738cc1f1aa31772ee2d6456c8dafbf (from https://pypi.org/simple/phydms/), version: 2.0.5
2021-07-13T17:09:10,805   Found link https://files.pythonhosted.org/packages/99/34/b560ee996e5e8b6b264c817aed8677ce28ac81e4287c6c70c8c95cf21c93/phydms-2.1.0.tar.gz#sha256=79d456f886cfaf626ef99df9aabae72f5d113cffa6a23bc17aa1f011dfba283c (from https://pypi.org/simple/phydms/), version: 2.1.0
2021-07-13T17:09:10,805   Found link https://files.pythonhosted.org/packages/c5/a3/041d15a1abbf422ac6f1c91eb23ba0db1e50777dba5a64e6df7fa2140871/phydms-2.1.1.tar.gz#sha256=7cd0f452a963fde64cc808cee8d198fdef4a1d81b5379c5aad2bf47ca0c1c852 (from https://pypi.org/simple/phydms/), version: 2.1.1
2021-07-13T17:09:10,805   Found link https://files.pythonhosted.org/packages/64/71/bdc4e1435808360148cfb1e94a23cb90699d8d8b2b90591d0b2776ae12de/phydms-2.1.2.tar.gz#sha256=7e7c970a7a73e730d57611edf2061f89d2e4b7f89c7f70ec2dbd912d5df759ba (from https://pypi.org/simple/phydms/), version: 2.1.2
2021-07-13T17:09:10,805   Found link https://files.pythonhosted.org/packages/30/6b/f6a25dc2940fd2fe23489136fa1c5e6c013114f9f35423be6a0242b6b161/phydms-2.1.3.tar.gz#sha256=36ca87804ba5e580aa0d16ab1f55b15eea3af76afbe0c4938887e001b6424ece (from https://pypi.org/simple/phydms/), version: 2.1.3
2021-07-13T17:09:10,806   Found link https://files.pythonhosted.org/packages/4c/5c/d575b084b454df2d4596c258d61de9ce637f19e028eb3d64b31ffb120e3d/phydms-2.1.4.tar.gz#sha256=048fec8aae41f4cf18ccd9e8f0c0980f654290dd9ce01b37e4f1f950ea54c78b (from https://pypi.org/simple/phydms/), version: 2.1.4
2021-07-13T17:09:10,806   Found link https://files.pythonhosted.org/packages/f0/f7/3881d836491bb3c0b174925c731ea595ddab5ed78cfe09f1e5221477cb86/phydms-2.2.0.tar.gz#sha256=9094114c44bb944e816e5baaa71e11d106112f993ce31e6531e36f4d358ea1cb (from https://pypi.org/simple/phydms/), version: 2.2.0
2021-07-13T17:09:10,806   Found link https://files.pythonhosted.org/packages/4f/b5/e90d6505b94c2a0a383d9ef281247366ba7e6d40770107df276f511b1e8c/phydms-2.2.1.tar.gz#sha256=702749858c1811b824ad0cd026c8cbfbd80961511cdfc06d6605746edf269eb3 (from https://pypi.org/simple/phydms/), version: 2.2.1
2021-07-13T17:09:10,806   Found link https://files.pythonhosted.org/packages/7b/ec/541e7deb49c50b1d154c54e7446c27aa132f279ceb8dd7cef39aa5cfd5d8/phydms-2.2.2.tar.gz#sha256=c85ad79c851bbcbd9c6c8e5515e92138c539d5bab7861f0ae3ac82a036c5ff0c (from https://pypi.org/simple/phydms/), version: 2.2.2
2021-07-13T17:09:10,807   Found link https://files.pythonhosted.org/packages/4c/ff/cf382034d5ceef9c4a6e60fbe8db814239039cf3282dbf461c2b9120ea4d/phydms-2.3.0.tar.gz#sha256=9031830847e875f9bee68f233740bf7e634131737cc7f7d490da84760a149c73 (from https://pypi.org/simple/phydms/), version: 2.3.0
2021-07-13T17:09:10,807   Found link https://files.pythonhosted.org/packages/2a/fc/8487f272f7436859fd869c9e01ee742c0f41d369593baf9fb063625b08cc/phydms-2.3.1.tar.gz#sha256=163681770b1e97e9c8fdbbebebd3b3296fd046d5ee48058ea3929f6a4a7ea1bb (from https://pypi.org/simple/phydms/), version: 2.3.1
2021-07-13T17:09:10,807   Found link https://files.pythonhosted.org/packages/42/e3/9ce35b49c05d49740b734134e122735c46382c494a6edffa594389afe0bd/phydms-2.3.2.tar.gz#sha256=7ec6cdf59600907f967ff9e6a811425a1f1e955bd1f14c910108660e52947e75 (from https://pypi.org/simple/phydms/), version: 2.3.2
2021-07-13T17:09:10,808   Found link https://files.pythonhosted.org/packages/82/fd/5aefb8ec8a1523c6cf5af53fb3d8e332e56cd97f7b02b85ceca8ecf90598/phydms-2.3.3.tar.gz#sha256=d92864e016ec049eea6b1e5b49d7025c613a25ac58a4d719f383f3f305b92749 (from https://pypi.org/simple/phydms/), version: 2.3.3
2021-07-13T17:09:10,808   Found link https://files.pythonhosted.org/packages/4a/9e/758ebda891bde626f0a18af45cf48cb3694796217fc23ccaee8b14997306/phydms-2.3.4.tar.gz#sha256=f6b98d81907ff0251beda2240c95bb88a61a140139987ce762eb3686f8d520fb (from https://pypi.org/simple/phydms/), version: 2.3.4
2021-07-13T17:09:10,808   Found link https://files.pythonhosted.org/packages/e2/ba/3c451bb7640a0846048f765c1c7890bf7d14a89010e89bd6adb71a9397c9/phydms-2.3.5.tar.gz#sha256=22d43faddddf322cae60281f292d083894c7974df4e8e40dca87a2f1612ac52a (from https://pypi.org/simple/phydms/), version: 2.3.5
2021-07-13T17:09:10,808   Found link https://files.pythonhosted.org/packages/06/2c/2bb28d20fdc6fb3e18d259719d7c04ffdc837cf857a7d2ac91aebe24cdb8/phydms-2.3.6.tar.gz#sha256=d7ecacbc80bfb957e7784c3713d53210297e9e39675ef1019e61b079bf3b91de (from https://pypi.org/simple/phydms/), version: 2.3.6
2021-07-13T17:09:10,809   Found link https://files.pythonhosted.org/packages/ee/e2/e24089a17f003fce6e21af5ed898be23c3fa7f6d54ec859ce96fb84bbaca/phydms-2.3.7.tar.gz#sha256=4605638252daee2da05d3406a611dc64144a026676f1a48891885edf29acc737 (from https://pypi.org/simple/phydms/), version: 2.3.7
2021-07-13T17:09:10,809   Found link https://files.pythonhosted.org/packages/e6/a0/865603f289d613ba1142f532d1c298c0550c8a378761c97b717426fef13a/phydms-2.3.8.tar.gz#sha256=b4d2bf8e1127395337dae15d2925a31b28a0222f25862222eba7f0fd64ebef68 (from https://pypi.org/simple/phydms/), version: 2.3.8
2021-07-13T17:09:10,809   Found link https://files.pythonhosted.org/packages/ca/5f/d2aef98fe0d98dcf0d59d1781cdcfa854bc61c2459d0da919b067c59133a/phydms-2.4.0.tar.gz#sha256=a94f1151dd7f2f198a0bdb34f60ca904c6416a7242e63a1f371d0ae82dcfccee (from https://pypi.org/simple/phydms/), version: 2.4.0
2021-07-13T17:09:10,809   Found link https://files.pythonhosted.org/packages/95/13/0bffbdc162c0530746a8cb693b66bbc8dca18549e0dc7b57b96abbcda8b2/phydms-2.4.1.tar.gz#sha256=04eb50bdb07907214050d19214d9bc8cf2002e24ca30fbe6e0f23f013d584d5c (from https://pypi.org/simple/phydms/), version: 2.4.1
2021-07-13T17:09:10,810 Skipping link: not a file: https://pypi.org/simple/phydms/
2021-07-13T17:09:10,835 Given no hashes to check 1 links for project 'phydms': discarding no candidates
2021-07-13T17:09:10,854 Collecting phydms==2.3.1
2021-07-13T17:09:10,855   Created temporary directory: /tmp/pip-unpack-fw70dxs2
2021-07-13T17:09:11,226   Downloading phydms-2.3.1.tar.gz (230 kB)
2021-07-13T17:09:11,510   Added phydms==2.3.1 from https://files.pythonhosted.org/packages/2a/fc/8487f272f7436859fd869c9e01ee742c0f41d369593baf9fb063625b08cc/phydms-2.3.1.tar.gz#sha256=163681770b1e97e9c8fdbbebebd3b3296fd046d5ee48058ea3929f6a4a7ea1bb to build tracker '/tmp/pip-req-tracker-9obxxm58'
2021-07-13T17:09:11,511     Running setup.py (path:/tmp/pip-wheel-7b4ag4he/phydms_7ba3337ad62b4c978397b6df533b00a8/setup.py) egg_info for package phydms
2021-07-13T17:09:11,511     Created temporary directory: /tmp/pip-pip-egg-info-vhj07hko
2021-07-13T17:09:11,512     Running command python setup.py egg_info
2021-07-13T17:09:12,648     running egg_info
2021-07-13T17:09:12,650     creating /tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info
2021-07-13T17:09:12,652     writing /tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/PKG-INFO
2021-07-13T17:09:12,654     writing dependency_links to /tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/dependency_links.txt
2021-07-13T17:09:12,655     writing requirements to /tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/requires.txt
2021-07-13T17:09:13,847     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-7b4ag4he/phydms_7ba3337ad62b4c978397b6df533b00a8/phydmslib/numutils.pyx
2021-07-13T17:09:13,847       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T17:09:15,302     Compiling phydmslib/numutils.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-13T17:09:15,303     [1/1] Cythonizing phydmslib/numutils.pyx
2021-07-13T17:09:15,303     writing top-level names to /tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/top_level.txt
2021-07-13T17:09:15,305     writing manifest file '/tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/SOURCES.txt'
2021-07-13T17:09:15,454     reading manifest file '/tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/SOURCES.txt'
2021-07-13T17:09:15,456     reading manifest template 'MANIFEST.in'
2021-07-13T17:09:15,460     warning: no files found matching 'docs/*.pdf'
2021-07-13T17:09:15,470     warning: no files found matching '*.rst' under directory 'phydmslib'
2021-07-13T17:09:15,483     warning: no files found matching '*.h' under directory 'phydmslib'
2021-07-13T17:09:15,491     warning: no previously-included files matching '*.so' found anywhere in distribution
2021-07-13T17:09:15,492     warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-13T17:09:15,493     warning: no previously-included files matching '.git*' found anywhere in distribution
2021-07-13T17:09:15,493     warning: no previously-included files matching '._*' found anywhere in distribution
2021-07-13T17:09:15,494     warning: no previously-included files matching 'slurm-*' found anywhere in distribution
2021-07-13T17:09:15,495     warning: no previously-included files matching '*.sbatch' found anywhere in distribution
2021-07-13T17:09:15,495     adding license file 'LICENSE.txt'
2021-07-13T17:09:15,500     writing manifest file '/tmp/pip-pip-egg-info-vhj07hko/phydms.egg-info/SOURCES.txt'
2021-07-13T17:09:15,696   Source in /tmp/pip-wheel-7b4ag4he/phydms_7ba3337ad62b4c978397b6df533b00a8 has version 2.3.1, which satisfies requirement phydms==2.3.1 from https://files.pythonhosted.org/packages/2a/fc/8487f272f7436859fd869c9e01ee742c0f41d369593baf9fb063625b08cc/phydms-2.3.1.tar.gz#sha256=163681770b1e97e9c8fdbbebebd3b3296fd046d5ee48058ea3929f6a4a7ea1bb
2021-07-13T17:09:15,697   Removed phydms==2.3.1 from https://files.pythonhosted.org/packages/2a/fc/8487f272f7436859fd869c9e01ee742c0f41d369593baf9fb063625b08cc/phydms-2.3.1.tar.gz#sha256=163681770b1e97e9c8fdbbebebd3b3296fd046d5ee48058ea3929f6a4a7ea1bb from build tracker '/tmp/pip-req-tracker-9obxxm58'
2021-07-13T17:09:15,701 Created temporary directory: /tmp/pip-unpack-milktigf
2021-07-13T17:09:15,702 Building wheels for collected packages: phydms
2021-07-13T17:09:15,706   Created temporary directory: /tmp/pip-wheel-moa5so12
2021-07-13T17:09:15,707   Building wheel for phydms (setup.py): started
2021-07-13T17:09:15,707   Destination directory: /tmp/pip-wheel-moa5so12
2021-07-13T17:09:15,707   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-7b4ag4he/phydms_7ba3337ad62b4c978397b6df533b00a8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-7b4ag4he/phydms_7ba3337ad62b4c978397b6df533b00a8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-moa5so12
2021-07-13T17:09:16,873   running bdist_wheel
2021-07-13T17:09:17,870   running build
2021-07-13T17:09:17,870   running build_py
2021-07-13T17:09:18,003   creating build
2021-07-13T17:09:18,004   creating build/lib.linux-armv7l-3.9
2021-07-13T17:09:18,004   creating build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,006   copying phydmslib/treelikelihood.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,009   copying phydmslib/utils.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,011   copying phydmslib/models.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,016   copying phydmslib/constants.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,018   copying phydmslib/simulate.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,020   copying phydmslib/_metadata.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,022   copying phydmslib/__init__.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,024   copying phydmslib/parsearguments.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,027   copying phydmslib/file_io.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,030   copying phydmslib/weblogo.py -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,035   copying phydmslib/_weblogo_template.eps -> build/lib.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,039   running build_ext
2021-07-13T17:09:18,046   building 'phydmslib.numutils' extension
2021-07-13T17:09:18,046   creating build/temp.linux-armv7l-3.9
2021-07-13T17:09:18,047   creating build/temp.linux-armv7l-3.9/phydmslib
2021-07-13T17:09:18,048   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c phydmslib/numutils.c -o build/temp.linux-armv7l-3.9/phydmslib/numutils.o -Wno-unused-function
2021-07-13T17:09:18,444   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-13T17:09:18,444                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-13T17:09:18,444                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-13T17:09:18,445                    from phydmslib/numutils.c:637:
2021-07-13T17:09:18,445   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-13T17:09:18,445      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-13T17:09:18,445         |  ^~~~~~~
2021-07-13T17:09:22,031   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/phydmslib/numutils.o -o build/lib.linux-armv7l-3.9/phydmslib/numutils.cpython-39-arm-linux-gnueabihf.so
2021-07-13T17:09:22,156   running build_scripts
2021-07-13T17:09:22,157   creating build/scripts-3.9
2021-07-13T17:09:22,158   copying and adjusting scripts/phydms -> build/scripts-3.9
2021-07-13T17:09:22,161   copying and adjusting scripts/phydms_comprehensive -> build/scripts-3.9
2021-07-13T17:09:22,163   copying and adjusting scripts/phydms_prepalignment -> build/scripts-3.9
2021-07-13T17:09:22,166   copying and adjusting scripts/phydms_logoplot -> build/scripts-3.9
2021-07-13T17:09:22,168   copying and adjusting scripts/phydms_divpressure -> build/scripts-3.9
2021-07-13T17:09:22,170   changing mode of build/scripts-3.9/phydms from 644 to 755
2021-07-13T17:09:22,170   changing mode of build/scripts-3.9/phydms_comprehensive from 644 to 755
2021-07-13T17:09:22,170   changing mode of build/scripts-3.9/phydms_prepalignment from 644 to 755
2021-07-13T17:09:22,171   changing mode of build/scripts-3.9/phydms_logoplot from 644 to 755
2021-07-13T17:09:22,171   changing mode of build/scripts-3.9/phydms_divpressure from 644 to 755
2021-07-13T17:09:22,179   installing to build/bdist.linux-armv7l/wheel
2021-07-13T17:09:22,179   running install
2021-07-13T17:09:22,181   running install_lib
2021-07-13T17:09:22,185   creating build/bdist.linux-armv7l
2021-07-13T17:09:22,186   creating build/bdist.linux-armv7l/wheel
2021-07-13T17:09:22,187   creating build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,188   copying build/lib.linux-armv7l-3.9/phydmslib/treelikelihood.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,192   copying build/lib.linux-armv7l-3.9/phydmslib/utils.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,194   copying build/lib.linux-armv7l-3.9/phydmslib/models.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,199   copying build/lib.linux-armv7l-3.9/phydmslib/constants.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,202   copying build/lib.linux-armv7l-3.9/phydmslib/simulate.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,204   copying build/lib.linux-armv7l-3.9/phydmslib/_metadata.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,205   copying build/lib.linux-armv7l-3.9/phydmslib/__init__.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,207   copying build/lib.linux-armv7l-3.9/phydmslib/parsearguments.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,210   copying build/lib.linux-armv7l-3.9/phydmslib/file_io.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,212   copying build/lib.linux-armv7l-3.9/phydmslib/numutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,221   copying build/lib.linux-armv7l-3.9/phydmslib/weblogo.py -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,225   copying build/lib.linux-armv7l-3.9/phydmslib/_weblogo_template.eps -> build/bdist.linux-armv7l/wheel/phydmslib
2021-07-13T17:09:22,228   running install_egg_info
2021-07-13T17:09:22,253   running egg_info
2021-07-13T17:09:22,254   writing phydms.egg-info/PKG-INFO
2021-07-13T17:09:22,256   writing dependency_links to phydms.egg-info/dependency_links.txt
2021-07-13T17:09:22,258   writing requirements to phydms.egg-info/requires.txt
2021-07-13T17:09:22,259   writing top-level names to phydms.egg-info/top_level.txt
2021-07-13T17:09:22,264   reading manifest file 'phydms.egg-info/SOURCES.txt'
2021-07-13T17:09:22,275   reading manifest template 'MANIFEST.in'
2021-07-13T17:09:22,278   warning: no files found matching 'docs/*.pdf'
2021-07-13T17:09:22,286   warning: no files found matching '*.rst' under directory 'phydmslib'
2021-07-13T17:09:22,298   warning: no files found matching '*.h' under directory 'phydmslib'
2021-07-13T17:09:22,305   warning: no previously-included files matching '*.so' found anywhere in distribution
2021-07-13T17:09:22,306   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2021-07-13T17:09:22,306   warning: no previously-included files matching '.git*' found anywhere in distribution
2021-07-13T17:09:22,307   warning: no previously-included files matching '._*' found anywhere in distribution
2021-07-13T17:09:22,308   warning: no previously-included files matching 'slurm-*' found anywhere in distribution
2021-07-13T17:09:22,309   warning: no previously-included files matching '*.sbatch' found anywhere in distribution
2021-07-13T17:09:22,309   adding license file 'LICENSE.txt'
2021-07-13T17:09:22,315   writing manifest file 'phydms.egg-info/SOURCES.txt'
2021-07-13T17:09:22,317   Copying phydms.egg-info to build/bdist.linux-armv7l/wheel/phydms-2.3.1-py3.9.egg-info
2021-07-13T17:09:22,328   running install_scripts
2021-07-13T17:09:22,350   creating build/bdist.linux-armv7l/wheel/phydms-2.3.1.data
2021-07-13T17:09:22,351   creating build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts
2021-07-13T17:09:22,352   copying build/scripts-3.9/phydms_divpressure -> build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts
2021-07-13T17:09:22,355   copying build/scripts-3.9/phydms_logoplot -> build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts
2021-07-13T17:09:22,357   copying build/scripts-3.9/phydms_comprehensive -> build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts
2021-07-13T17:09:22,360   copying build/scripts-3.9/phydms -> build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts
2021-07-13T17:09:22,363   copying build/scripts-3.9/phydms_prepalignment -> build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts
2021-07-13T17:09:22,365   changing mode of build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts/phydms_divpressure to 755
2021-07-13T17:09:22,365   changing mode of build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts/phydms_logoplot to 755
2021-07-13T17:09:22,366   changing mode of build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts/phydms_comprehensive to 755
2021-07-13T17:09:22,366   changing mode of build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts/phydms to 755
2021-07-13T17:09:22,366   changing mode of build/bdist.linux-armv7l/wheel/phydms-2.3.1.data/scripts/phydms_prepalignment to 755
2021-07-13T17:09:22,401   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-13T17:09:22,407   creating build/bdist.linux-armv7l/wheel/phydms-2.3.1.dist-info/WHEEL
2021-07-13T17:09:22,410   creating '/tmp/pip-wheel-moa5so12/phydms-2.3.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T17:09:22,415   adding 'phydms-2.3.1.data/scripts/phydms'
2021-07-13T17:09:22,418   adding 'phydms-2.3.1.data/scripts/phydms_comprehensive'
2021-07-13T17:09:22,421   adding 'phydms-2.3.1.data/scripts/phydms_divpressure'
2021-07-13T17:09:22,423   adding 'phydms-2.3.1.data/scripts/phydms_logoplot'
2021-07-13T17:09:22,426   adding 'phydms-2.3.1.data/scripts/phydms_prepalignment'
2021-07-13T17:09:22,429   adding 'phydmslib/__init__.py'
2021-07-13T17:09:22,430   adding 'phydmslib/_metadata.py'
2021-07-13T17:09:22,433   adding 'phydmslib/_weblogo_template.eps'
2021-07-13T17:09:22,434   adding 'phydmslib/constants.py'
2021-07-13T17:09:22,437   adding 'phydmslib/file_io.py'
2021-07-13T17:09:22,450   adding 'phydmslib/models.py'
2021-07-13T17:09:22,504   adding 'phydmslib/numutils.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T17:09:22,508   adding 'phydmslib/parsearguments.py'
2021-07-13T17:09:22,510   adding 'phydmslib/simulate.py'
2021-07-13T17:09:22,515   adding 'phydmslib/treelikelihood.py'
2021-07-13T17:09:22,517   adding 'phydmslib/utils.py'
2021-07-13T17:09:22,523   adding 'phydmslib/weblogo.py'
2021-07-13T17:09:22,529   adding 'phydms-2.3.1.dist-info/LICENSE.txt'
2021-07-13T17:09:22,530   adding 'phydms-2.3.1.dist-info/METADATA'
2021-07-13T17:09:22,531   adding 'phydms-2.3.1.dist-info/WHEEL'
2021-07-13T17:09:22,532   adding 'phydms-2.3.1.dist-info/top_level.txt'
2021-07-13T17:09:22,532   adding 'phydms-2.3.1.dist-info/RECORD'
2021-07-13T17:09:22,537   removing build/bdist.linux-armv7l/wheel
2021-07-13T17:09:22,691   Building wheel for phydms (setup.py): finished with status 'done'
2021-07-13T17:09:22,696   Created wheel for phydms: filename=phydms-2.3.1-cp39-cp39-linux_armv7l.whl size=205031 sha256=fbc1dccdc471595e2c049fadc603b3f772038b4e2bf5b5dc73a06aa718a1bcb3
2021-07-13T17:09:22,696   Stored in directory: /tmp/pip-ephem-wheel-cache-chcfs1it/wheels/3b/31/8d/a8a6868d9e9bc59aafe76bf82710ddd49d3bb0439d1748dca3
2021-07-13T17:09:22,707 Successfully built phydms
2021-07-13T17:09:22,717 Removed build tracker: '/tmp/pip-req-tracker-9obxxm58'