2021-07-13T18:19:32,208 Created temporary directory: /tmp/pip-ephem-wheel-cache-wyejc5ca
2021-07-13T18:19:32,212 Created temporary directory: /tmp/pip-req-tracker-wr4zmrd9
2021-07-13T18:19:32,213 Initialized build tracking at /tmp/pip-req-tracker-wr4zmrd9
2021-07-13T18:19:32,213 Created build tracker: /tmp/pip-req-tracker-wr4zmrd9
2021-07-13T18:19:32,214 Entered build tracker: /tmp/pip-req-tracker-wr4zmrd9
2021-07-13T18:19:32,215 Created temporary directory: /tmp/pip-wheel-d5ee84la
2021-07-13T18:19:32,263 1 location(s) to search for versions of isambard:
2021-07-13T18:19:32,263 * https://pypi.org/simple/isambard/
2021-07-13T18:19:32,264 Fetching project page and analyzing links: https://pypi.org/simple/isambard/
2021-07-13T18:19:32,264 Getting page https://pypi.org/simple/isambard/
2021-07-13T18:19:32,266 Found index url https://pypi.org/simple
2021-07-13T18:19:32,375   Found link https://files.pythonhosted.org/packages/ca/6d/9456a011721c3376fc03e77d5ea89f563dfac30660be8b2517ad1ba2c44a/ISAMBARD-2.0.1.tar.gz#sha256=7eccb792ee458742fd4ee8493ed18eb2789b33db723b260177ca8bda535836f3 (from https://pypi.org/simple/isambard/), version: 2.0.1
2021-07-13T18:19:32,376   Found link https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 (from https://pypi.org/simple/isambard/), version: 2.2.0
2021-07-13T18:19:32,377   Found link https://files.pythonhosted.org/packages/6d/5d/36e0369e6e7bdb1061074aff44dab96caf1e1809a289f41156a0a34bce49/ISAMBARD-2.3.1.tar.gz#sha256=5c6a79c4085e577c2924df34301f095b52a7cd6a3a1a8422978d4787b26d715c (from https://pypi.org/simple/isambard/), version: 2.3.1
2021-07-13T18:19:32,378 Skipping link: not a file: https://pypi.org/simple/isambard/
2021-07-13T18:19:32,407 Given no hashes to check 1 links for project 'isambard': discarding no candidates
2021-07-13T18:19:32,438 Collecting isambard==2.2.0
2021-07-13T18:19:32,441   Created temporary directory: /tmp/pip-unpack-nj2g_ta6
2021-07-13T18:19:32,490   Downloading ISAMBARD-2.2.0.tar.gz (359 kB)
2021-07-13T18:19:32,872   Added isambard==2.2.0 from https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 to build tracker '/tmp/pip-req-tracker-wr4zmrd9'
2021-07-13T18:19:32,874     Running setup.py (path:/tmp/pip-wheel-d5ee84la/isambard_5827b5273cc14b868c57ffaa3a5a9e1d/setup.py) egg_info for package isambard
2021-07-13T18:19:32,875     Created temporary directory: /tmp/pip-pip-egg-info-wdz6821h
2021-07-13T18:19:32,875     Running command python setup.py egg_info
2021-07-13T18:19:35,647     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-d5ee84la/isambard_5827b5273cc14b868c57ffaa3a5a9e1d/src/isambard/specifications/ta_polypeptide.pyx
2021-07-13T18:19:35,648       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T18:19:37,291     Compiling src/isambard/specifications/ta_polypeptide.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-13T18:19:37,292     [1/1] Cythonizing src/isambard/specifications/ta_polypeptide.pyx
2021-07-13T18:19:37,503     running egg_info
2021-07-13T18:19:37,506     creating /tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info
2021-07-13T18:19:37,507     writing /tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/PKG-INFO
2021-07-13T18:19:37,511     writing dependency_links to /tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/dependency_links.txt
2021-07-13T18:19:37,514     writing requirements to /tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/requires.txt
2021-07-13T18:19:37,515     writing top-level names to /tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/top_level.txt
2021-07-13T18:19:37,517     writing manifest file '/tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T18:19:37,723     reading manifest file '/tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T18:19:37,725     reading manifest template 'MANIFEST.in'
2021-07-13T18:19:37,771     adding license file 'LICENSE.txt'
2021-07-13T18:19:37,776     writing manifest file '/tmp/pip-pip-egg-info-wdz6821h/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T18:19:37,971   Source in /tmp/pip-wheel-d5ee84la/isambard_5827b5273cc14b868c57ffaa3a5a9e1d has version 2.2.0, which satisfies requirement isambard==2.2.0 from https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51
2021-07-13T18:19:37,973   Removed isambard==2.2.0 from https://files.pythonhosted.org/packages/9c/ba/636028b8e309e217e171016e34b2a9f5f0b37f3be916d02ad55f97cf4991/ISAMBARD-2.2.0.tar.gz#sha256=c7c81ce2deb77619aa561f69abb54980366bd8d29bb635c3a0e4e2ca6feb1c51 from build tracker '/tmp/pip-req-tracker-wr4zmrd9'
2021-07-13T18:19:37,989 Created temporary directory: /tmp/pip-unpack-_5b71xbk
2021-07-13T18:19:37,990 Building wheels for collected packages: isambard
2021-07-13T18:19:37,996   Created temporary directory: /tmp/pip-wheel-rbba_hqe
2021-07-13T18:19:37,997   Building wheel for isambard (setup.py): started
2021-07-13T18:19:37,997   Destination directory: /tmp/pip-wheel-rbba_hqe
2021-07-13T18:19:37,998   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-d5ee84la/isambard_5827b5273cc14b868c57ffaa3a5a9e1d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-d5ee84la/isambard_5827b5273cc14b868c57ffaa3a5a9e1d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rbba_hqe
2021-07-13T18:19:41,413   running bdist_wheel
2021-07-13T18:19:41,419   running build
2021-07-13T18:19:41,419   running build_py
2021-07-13T18:19:41,701   creating build
2021-07-13T18:19:41,701   creating build/lib.linux-armv7l-3.9
2021-07-13T18:19:41,702   creating build/lib.linux-armv7l-3.9/isambard
2021-07-13T18:19:41,704   copying src/isambard/__init__.py -> build/lib.linux-armv7l-3.9/isambard
2021-07-13T18:19:41,708   creating build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,709   copying src/isambard/specifications/coiledcoil.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,713   copying src/isambard/specifications/helix.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,716   copying src/isambard/specifications/solenoid.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,719   copying src/isambard/specifications/nucleic_acid_strand.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,722   copying src/isambard/specifications/__init__.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,725   copying src/isambard/specifications/nucleic_acid_duplex.py -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,729   creating build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T18:19:41,730   copying src/isambard/evaluation/contact_order.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T18:19:41,733   copying src/isambard/evaluation/pacc.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T18:19:41,737   copying src/isambard/evaluation/dssp.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T18:19:41,740   copying src/isambard/evaluation/__init__.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T18:19:41,742   copying src/isambard/evaluation/hydrophobic_fitness.py -> build/lib.linux-armv7l-3.9/isambard/evaluation
2021-07-13T18:19:41,747   creating build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T18:19:41,748   copying src/isambard/optimisation/mmc_optimizer.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T18:19:41,751   copying src/isambard/optimisation/evo_optimizers.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T18:19:41,755   copying src/isambard/optimisation/base_evo_opt.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T18:19:41,759   copying src/isambard/optimisation/__init__.py -> build/lib.linux-armv7l-3.9/isambard/optimisation
2021-07-13T18:19:41,762   creating build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T18:19:41,764   copying src/isambard/modelling/non_canonical.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T18:19:41,767   copying src/isambard/modelling/__init__.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T18:19:41,770   copying src/isambard/modelling/scwrl.py -> build/lib.linux-armv7l-3.9/isambard/modelling
2021-07-13T18:19:41,773   running egg_info
2021-07-13T18:19:41,798   writing src/ISAMBARD.egg-info/PKG-INFO
2021-07-13T18:19:41,801   writing dependency_links to src/ISAMBARD.egg-info/dependency_links.txt
2021-07-13T18:19:41,805   writing requirements to src/ISAMBARD.egg-info/requires.txt
2021-07-13T18:19:41,807   writing top-level names to src/ISAMBARD.egg-info/top_level.txt
2021-07-13T18:19:41,821   reading manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T18:19:41,825   reading manifest template 'MANIFEST.in'
2021-07-13T18:19:41,883   adding license file 'LICENSE.txt'
2021-07-13T18:19:41,889   writing manifest file 'src/ISAMBARD.egg-info/SOURCES.txt'
2021-07-13T18:19:41,897   creating build/lib.linux-armv7l-3.9/isambard/__pycache__
2021-07-13T18:19:41,898   copying src/isambard/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/__pycache__
2021-07-13T18:19:41,902   copying src/isambard/specifications/ta_polypeptide.c -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,921   copying src/isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,941   copying src/isambard/specifications/ta_polypeptide.pyx -> build/lib.linux-armv7l-3.9/isambard/specifications
2021-07-13T18:19:41,946   creating build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,948   copying src/isambard/specifications/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,952   copying src/isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,957   copying src/isambard/specifications/__pycache__/helix.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,962   copying src/isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,966   copying src/isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,971   copying src/isambard/specifications/__pycache__/solenoid.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__
2021-07-13T18:19:41,976   creating build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T18:19:41,978   copying src/isambard/evaluation/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T18:19:41,982   copying src/isambard/evaluation/__pycache__/contact_order.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T18:19:41,986   copying src/isambard/evaluation/__pycache__/dssp.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T18:19:41,990   copying src/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T18:19:41,995   copying src/isambard/evaluation/__pycache__/pacc.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__
2021-07-13T18:19:42,000   creating build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T18:19:42,002   copying src/isambard/optimisation/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T18:19:42,006   copying src/isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T18:19:42,011   copying src/isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T18:19:42,016   copying src/isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__
2021-07-13T18:19:42,021   creating build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,023   copying src/isambard/modelling/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,027   copying src/isambard/modelling/__pycache__/create_loop_data.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,032   copying src/isambard/modelling/__pycache__/create_loop_database.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,037   copying src/isambard/modelling/__pycache__/create_loop_db.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,041   copying src/isambard/modelling/__pycache__/extract_loop_data.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,046   copying src/isambard/modelling/__pycache__/loop_fitter.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,050   copying src/isambard/modelling/__pycache__/loop_fitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,055   copying src/isambard/modelling/__pycache__/non_canonical.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,059   copying src/isambard/modelling/__pycache__/scwrl.cpython-36.pyc -> build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__
2021-07-13T18:19:42,064   creating build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals
2021-07-13T18:19:42,065   copying src/isambard/modelling/reference_ampals/README.md -> build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals
2021-07-13T18:19:42,069   creating build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T18:19:42,071   copying src/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T18:19:42,079   running build_ext
2021-07-13T18:19:42,088   building 'isambard.specifications.ta_polypeptide' extension
2021-07-13T18:19:42,090   creating build/temp.linux-armv7l-3.9
2021-07-13T18:19:42,091   creating build/temp.linux-armv7l-3.9/src
2021-07-13T18:19:42,093   creating build/temp.linux-armv7l-3.9/src/isambard
2021-07-13T18:19:42,094   creating build/temp.linux-armv7l-3.9/src/isambard/specifications
2021-07-13T18:19:42,096   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/isambard/specifications/ta_polypeptide.c -o build/temp.linux-armv7l-3.9/src/isambard/specifications/ta_polypeptide.o
2021-07-13T18:20:03,071   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/isambard/specifications/ta_polypeptide.o -o build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so
2021-07-13T18:20:03,271   installing to build/bdist.linux-armv7l/wheel
2021-07-13T18:20:03,274   running install
2021-07-13T18:20:03,275   running install_lib
2021-07-13T18:20:03,290   creating build/bdist.linux-armv7l
2021-07-13T18:20:03,291   creating build/bdist.linux-armv7l/wheel
2021-07-13T18:20:03,294   creating build/bdist.linux-armv7l/wheel/isambard
2021-07-13T18:20:03,297   creating build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,300   creating build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,303   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/solenoid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,308   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,312   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/helix.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,317   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,321   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,325   copying build/lib.linux-armv7l-3.9/isambard/specifications/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/specifications/__pycache__
2021-07-13T18:20:03,329   copying build/lib.linux-armv7l-3.9/isambard/specifications/coiledcoil.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,333   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.c -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,363   copying build/lib.linux-armv7l-3.9/isambard/specifications/helix.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,367   copying build/lib.linux-armv7l-3.9/isambard/specifications/solenoid.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,371   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,388   copying build/lib.linux-armv7l-3.9/isambard/specifications/nucleic_acid_strand.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,393   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,413   copying build/lib.linux-armv7l-3.9/isambard/specifications/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,417   copying build/lib.linux-armv7l-3.9/isambard/specifications/ta_polypeptide.pyx -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,422   copying build/lib.linux-armv7l-3.9/isambard/specifications/nucleic_acid_duplex.py -> build/bdist.linux-armv7l/wheel/isambard/specifications
2021-07-13T18:20:03,427   creating build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-07-13T18:20:03,429   copying build/lib.linux-armv7l-3.9/isambard/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/__pycache__
2021-07-13T18:20:03,443   creating build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T18:20:03,446   creating build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T18:20:03,448   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/dssp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T18:20:03,452   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/contact_order.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T18:20:03,456   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/pacc.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T18:20:03,460   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T18:20:03,464   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/evaluation/__pycache__
2021-07-13T18:20:03,468   copying build/lib.linux-armv7l-3.9/isambard/evaluation/contact_order.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T18:20:03,475   copying build/lib.linux-armv7l-3.9/isambard/evaluation/pacc.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T18:20:03,479   copying build/lib.linux-armv7l-3.9/isambard/evaluation/dssp.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T18:20:03,483   copying build/lib.linux-armv7l-3.9/isambard/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T18:20:03,487   copying build/lib.linux-armv7l-3.9/isambard/evaluation/hydrophobic_fitness.py -> build/bdist.linux-armv7l/wheel/isambard/evaluation
2021-07-13T18:20:03,492   creating build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T18:20:03,510   copying build/lib.linux-armv7l-3.9/isambard/optimisation/mmc_optimizer.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T18:20:03,516   creating build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T18:20:03,518   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T18:20:03,523   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T18:20:03,526   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T18:20:03,531   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/optimisation/__pycache__
2021-07-13T18:20:03,535   copying build/lib.linux-armv7l-3.9/isambard/optimisation/evo_optimizers.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T18:20:03,541   copying build/lib.linux-armv7l-3.9/isambard/optimisation/base_evo_opt.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T18:20:03,545   copying build/lib.linux-armv7l-3.9/isambard/optimisation/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/optimisation
2021-07-13T18:20:03,551   creating build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T18:20:03,553   creating build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,570   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/scwrl.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,574   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/create_loop_data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,578   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/create_loop_database.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,581   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/extract_loop_data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,585   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/create_loop_db.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,588   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/loop_fitter.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,591   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/non_canonical.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,595   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/loop_fitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,598   copying build/lib.linux-armv7l-3.9/isambard/modelling/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/isambard/modelling/__pycache__
2021-07-13T18:20:03,602   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-07-13T18:20:03,605   creating build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T18:20:03,610   copying build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals/non_canonical_amino_acids
2021-07-13T18:20:03,614   copying build/lib.linux-armv7l-3.9/isambard/modelling/reference_ampals/README.md -> build/bdist.linux-armv7l/wheel/isambard/modelling/reference_ampals
2021-07-13T18:20:03,617   copying build/lib.linux-armv7l-3.9/isambard/modelling/non_canonical.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T18:20:03,620   copying build/lib.linux-armv7l-3.9/isambard/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T18:20:03,623   copying build/lib.linux-armv7l-3.9/isambard/modelling/scwrl.py -> build/bdist.linux-armv7l/wheel/isambard/modelling
2021-07-13T18:20:03,627   copying build/lib.linux-armv7l-3.9/isambard/__init__.py -> build/bdist.linux-armv7l/wheel/isambard
2021-07-13T18:20:03,630   running install_egg_info
2021-07-13T18:20:03,744   Copying src/ISAMBARD.egg-info to build/bdist.linux-armv7l/wheel/ISAMBARD-2.2.0-py3.9.egg-info
2021-07-13T18:20:03,784   running install_scripts
2021-07-13T18:20:03,920   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-13T18:20:03,929   creating build/bdist.linux-armv7l/wheel/ISAMBARD-2.2.0.dist-info/WHEEL
2021-07-13T18:20:03,934   creating '/tmp/pip-wheel-rbba_hqe/ISAMBARD-2.2.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T18:20:03,953   adding 'isambard/__init__.py'
2021-07-13T18:20:03,956   adding 'isambard/__pycache__/__init__.cpython-36.pyc'
2021-07-13T18:20:03,960   adding 'isambard/evaluation/__init__.py'
2021-07-13T18:20:03,964   adding 'isambard/evaluation/contact_order.py'
2021-07-13T18:20:03,980   adding 'isambard/evaluation/dssp.py'
2021-07-13T18:20:03,990   adding 'isambard/evaluation/hydrophobic_fitness.py'
2021-07-13T18:20:03,993   adding 'isambard/evaluation/pacc.py'
2021-07-13T18:20:03,996   adding 'isambard/evaluation/__pycache__/__init__.cpython-36.pyc'
2021-07-13T18:20:03,998   adding 'isambard/evaluation/__pycache__/contact_order.cpython-36.pyc'
2021-07-13T18:20:04,012   adding 'isambard/evaluation/__pycache__/dssp.cpython-36.pyc'
2021-07-13T18:20:04,014   adding 'isambard/evaluation/__pycache__/hydrophobic_fitness.cpython-36.pyc'
2021-07-13T18:20:04,018   adding 'isambard/evaluation/__pycache__/pacc.cpython-36.pyc'
2021-07-13T18:20:04,031   adding 'isambard/modelling/__init__.py'
2021-07-13T18:20:04,033   adding 'isambard/modelling/non_canonical.py'
2021-07-13T18:20:04,037   adding 'isambard/modelling/scwrl.py'
2021-07-13T18:20:04,041   adding 'isambard/modelling/__pycache__/__init__.cpython-36.pyc'
2021-07-13T18:20:04,044   adding 'isambard/modelling/__pycache__/create_loop_data.cpython-36.pyc'
2021-07-13T18:20:04,048   adding 'isambard/modelling/__pycache__/create_loop_database.cpython-36.pyc'
2021-07-13T18:20:04,051   adding 'isambard/modelling/__pycache__/create_loop_db.cpython-36.pyc'
2021-07-13T18:20:04,054   adding 'isambard/modelling/__pycache__/extract_loop_data.cpython-36.pyc'
2021-07-13T18:20:04,058   adding 'isambard/modelling/__pycache__/loop_fitter.cpython-36.pyc'
2021-07-13T18:20:04,060   adding 'isambard/modelling/__pycache__/loop_fitting.cpython-36.pyc'
2021-07-13T18:20:04,063   adding 'isambard/modelling/__pycache__/non_canonical.cpython-36.pyc'
2021-07-13T18:20:04,066   adding 'isambard/modelling/__pycache__/scwrl.cpython-36.pyc'
2021-07-13T18:20:04,070   adding 'isambard/modelling/reference_ampals/README.md'
2021-07-13T18:20:04,073   adding 'isambard/modelling/reference_ampals/non_canonical_amino_acids/hydroxyproline_ref_1bkv_0_6.pickle'
2021-07-13T18:20:04,076   adding 'isambard/optimisation/__init__.py'
2021-07-13T18:20:04,080   adding 'isambard/optimisation/base_evo_opt.py'
2021-07-13T18:20:04,084   adding 'isambard/optimisation/evo_optimizers.py'
2021-07-13T18:20:04,088   adding 'isambard/optimisation/mmc_optimizer.py'
2021-07-13T18:20:04,091   adding 'isambard/optimisation/__pycache__/__init__.cpython-36.pyc'
2021-07-13T18:20:04,095   adding 'isambard/optimisation/__pycache__/base_evo_opt.cpython-36.pyc'
2021-07-13T18:20:04,100   adding 'isambard/optimisation/__pycache__/evo_optimizers.cpython-36.pyc'
2021-07-13T18:20:04,104   adding 'isambard/optimisation/__pycache__/mmc_optimizer.cpython-36.pyc'
2021-07-13T18:20:04,107   adding 'isambard/specifications/__init__.py'
2021-07-13T18:20:04,110   adding 'isambard/specifications/coiledcoil.py'
2021-07-13T18:20:04,114   adding 'isambard/specifications/helix.py'
2021-07-13T18:20:04,116   adding 'isambard/specifications/nucleic_acid_duplex.py'
2021-07-13T18:20:04,120   adding 'isambard/specifications/nucleic_acid_strand.py'
2021-07-13T18:20:04,122   adding 'isambard/specifications/solenoid.py'
2021-07-13T18:20:04,179   adding 'isambard/specifications/ta_polypeptide.c'
2021-07-13T18:20:04,359   adding 'isambard/specifications/ta_polypeptide.cpython-36m-x86_64-linux-gnu.so'
2021-07-13T18:20:04,610   adding 'isambard/specifications/ta_polypeptide.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T18:20:04,632   adding 'isambard/specifications/ta_polypeptide.pyx'
2021-07-13T18:20:04,635   adding 'isambard/specifications/__pycache__/__init__.cpython-36.pyc'
2021-07-13T18:20:04,639   adding 'isambard/specifications/__pycache__/coiledcoil.cpython-36.pyc'
2021-07-13T18:20:04,643   adding 'isambard/specifications/__pycache__/helix.cpython-36.pyc'
2021-07-13T18:20:04,646   adding 'isambard/specifications/__pycache__/nucleic_acid_duplex.cpython-36.pyc'
2021-07-13T18:20:04,650   adding 'isambard/specifications/__pycache__/nucleic_acid_strand.cpython-36.pyc'
2021-07-13T18:20:04,653   adding 'isambard/specifications/__pycache__/solenoid.cpython-36.pyc'
2021-07-13T18:20:04,655   adding 'ISAMBARD-2.2.0.dist-info/LICENSE.txt'
2021-07-13T18:20:04,658   adding 'ISAMBARD-2.2.0.dist-info/METADATA'
2021-07-13T18:20:04,660   adding 'ISAMBARD-2.2.0.dist-info/WHEEL'
2021-07-13T18:20:04,662   adding 'ISAMBARD-2.2.0.dist-info/top_level.txt'
2021-07-13T18:20:04,665   adding 'ISAMBARD-2.2.0.dist-info/RECORD'
2021-07-13T18:20:04,679   removing build/bdist.linux-armv7l/wheel
2021-07-13T18:20:04,872   Building wheel for isambard (setup.py): finished with status 'done'
2021-07-13T18:20:04,884   Created wheel for isambard: filename=ISAMBARD-2.2.0-cp39-cp39-linux_armv7l.whl size=624261 sha256=0010224aeec40539f9f2ef43ef893a7b0735d1b3f4e95dc31708219c0337dc30
2021-07-13T18:20:04,885   Stored in directory: /tmp/pip-ephem-wheel-cache-wyejc5ca/wheels/90/0c/4c/deb4e3077ec765ab1bd62147280e2f6bb90d3dd21758b9ba47
2021-07-13T18:20:04,904 Successfully built isambard
2021-07-13T18:20:04,936 Removed build tracker: '/tmp/pip-req-tracker-wr4zmrd9'