2021-07-13T18:18:31,410 Created temporary directory: /tmp/pip-ephem-wheel-cache-51tmabww
2021-07-13T18:18:31,414 Created temporary directory: /tmp/pip-req-tracker-umrtj9fj
2021-07-13T18:18:31,414 Initialized build tracking at /tmp/pip-req-tracker-umrtj9fj
2021-07-13T18:18:31,415 Created build tracker: /tmp/pip-req-tracker-umrtj9fj
2021-07-13T18:18:31,415 Entered build tracker: /tmp/pip-req-tracker-umrtj9fj
2021-07-13T18:18:31,416 Created temporary directory: /tmp/pip-wheel-8k6k3vim
2021-07-13T18:18:31,461 1 location(s) to search for versions of ampal:
2021-07-13T18:18:31,461 * https://pypi.org/simple/ampal/
2021-07-13T18:18:31,462 Fetching project page and analyzing links: https://pypi.org/simple/ampal/
2021-07-13T18:18:31,463 Getting page https://pypi.org/simple/ampal/
2021-07-13T18:18:31,465 Found index url https://pypi.org/simple
2021-07-13T18:18:31,579   Found link https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz#sha256=3d8e8df30a9534d75b9771dfd45bd48706cc2409f8e7573da7a0951be85bf29d (from https://pypi.org/simple/ampal/), version: 1.0.0
2021-07-13T18:18:31,580   Found link https://files.pythonhosted.org/packages/c2/90/2aecb8bdeab8de4f896f38fc792b434292f0f96a86cd3b860c849f4cfd55/AMPAL-1.0.1.tar.gz#sha256=58e351534d49ef3a7b5267dd32462c20852a63213a36acfbf670e447009cac21 (from https://pypi.org/simple/ampal/), version: 1.0.1
2021-07-13T18:18:31,580   Found link https://files.pythonhosted.org/packages/29/39/ac32680ba515731a81942c3a1bb8d0731fc0da02185885794ccf51dd604b/AMPAL-1.1.0.tar.gz#sha256=ab6beac3f730bc12a65d821a8b3d7ca68643e29179f08fef0607d45078bf1022 (from https://pypi.org/simple/ampal/), version: 1.1.0
2021-07-13T18:18:31,581   Found link https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz#sha256=9a62def0cbdd4b000c0d1e7a76441e7ba873f0da9ef018af1871638bb13214a7 (from https://pypi.org/simple/ampal/), version: 1.2.0
2021-07-13T18:18:31,582   Found link https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276 (from https://pypi.org/simple/ampal/), version: 1.3.0
2021-07-13T18:18:31,583   Found link https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz#sha256=ab0f6ee5284e923dac5f599c1e9c93dc2925ed3e63f156a8dd7cc58d69a0c5cc (from https://pypi.org/simple/ampal/), version: 1.4.0
2021-07-13T18:18:31,583 Skipping link: not a file: https://pypi.org/simple/ampal/
2021-07-13T18:18:31,613 Given no hashes to check 1 links for project 'ampal': discarding no candidates
2021-07-13T18:18:31,645 Collecting ampal==1.3.0
2021-07-13T18:18:31,648   Created temporary directory: /tmp/pip-unpack-7g_fnkd0
2021-07-13T18:18:31,711   Downloading AMPAL-1.3.0.tar.gz (1.2 MB)
2021-07-13T18:18:32,453   Added ampal==1.3.0 from https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276 to build tracker '/tmp/pip-req-tracker-umrtj9fj'
2021-07-13T18:18:32,455     Running setup.py (path:/tmp/pip-wheel-8k6k3vim/ampal_ceae6b0b9c9541f197af9b7fe0b3abb0/setup.py) egg_info for package ampal
2021-07-13T18:18:32,456     Created temporary directory: /tmp/pip-pip-egg-info-ds__ovuy
2021-07-13T18:18:32,456     Running command python setup.py egg_info
2021-07-13T18:18:35,136     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-8k6k3vim/ampal_ceae6b0b9c9541f197af9b7fe0b3abb0/src/ampal/geometry.pyx
2021-07-13T18:18:35,137       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-13T18:18:41,055     Compiling src/ampal/geometry.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/math.pxd.
2021-07-13T18:18:41,056     [1/1] Cythonizing src/ampal/geometry.pyx
2021-07-13T18:18:41,335     running egg_info
2021-07-13T18:18:41,338     creating /tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info
2021-07-13T18:18:41,340     writing /tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/PKG-INFO
2021-07-13T18:18:41,344     writing dependency_links to /tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/dependency_links.txt
2021-07-13T18:18:41,348     writing requirements to /tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/requires.txt
2021-07-13T18:18:41,349     writing top-level names to /tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/top_level.txt
2021-07-13T18:18:41,352     writing manifest file '/tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/SOURCES.txt'
2021-07-13T18:18:41,565     reading manifest file '/tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/SOURCES.txt'
2021-07-13T18:18:41,567     reading manifest template 'MANIFEST.in'
2021-07-13T18:18:41,569     warning: no files found matching 'LICENSE.txt'
2021-07-13T18:18:41,614     writing manifest file '/tmp/pip-pip-egg-info-ds__ovuy/AMPAL.egg-info/SOURCES.txt'
2021-07-13T18:18:41,872   Source in /tmp/pip-wheel-8k6k3vim/ampal_ceae6b0b9c9541f197af9b7fe0b3abb0 has version 1.3.0, which satisfies requirement ampal==1.3.0 from https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276
2021-07-13T18:18:41,874   Removed ampal==1.3.0 from https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz#sha256=8f5a806e642f8978a8ef6ba678e3187e9fc4a6947c92e6fd35c2ccf03fa89276 from build tracker '/tmp/pip-req-tracker-umrtj9fj'
2021-07-13T18:18:41,890 Created temporary directory: /tmp/pip-unpack-w20ztw4l
2021-07-13T18:18:41,891 Building wheels for collected packages: ampal
2021-07-13T18:18:41,898   Created temporary directory: /tmp/pip-wheel-9rlocfa5
2021-07-13T18:18:41,898   Building wheel for ampal (setup.py): started
2021-07-13T18:18:41,899   Destination directory: /tmp/pip-wheel-9rlocfa5
2021-07-13T18:18:41,899   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-8k6k3vim/ampal_ceae6b0b9c9541f197af9b7fe0b3abb0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-8k6k3vim/ampal_ceae6b0b9c9541f197af9b7fe0b3abb0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9rlocfa5
2021-07-13T18:18:45,134   running bdist_wheel
2021-07-13T18:18:45,153   running build
2021-07-13T18:18:45,154   running build_py
2021-07-13T18:18:45,491   creating build
2021-07-13T18:18:45,491   creating build/lib.linux-armv7l-3.9
2021-07-13T18:18:45,493   creating build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,494   copying src/ampal/ampal_warnings.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,498   copying src/ampal/data.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,500   copying src/ampal/ligands.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,503   copying src/ampal/assembly.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,507   copying src/ampal/naccess.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,524   copying src/ampal/pdb_parser.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,528   copying src/ampal/nucleic_acid.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,532   copying src/ampal/interactions.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,535   copying src/ampal/pseudo_atoms.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,538   copying src/ampal/__init__.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,541   copying src/ampal/align.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,544   copying src/ampal/base_ampal.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,549   copying src/ampal/dssp.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,552   copying src/ampal/amino_acids.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,556   copying src/ampal/analyse_protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,560   copying src/ampal/protein.py -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,564   running egg_info
2021-07-13T18:18:45,585   writing src/AMPAL.egg-info/PKG-INFO
2021-07-13T18:18:45,588   writing dependency_links to src/AMPAL.egg-info/dependency_links.txt
2021-07-13T18:18:45,592   writing requirements to src/AMPAL.egg-info/requires.txt
2021-07-13T18:18:45,593   writing top-level names to src/AMPAL.egg-info/top_level.txt
2021-07-13T18:18:45,603   reading manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T18:18:45,607   reading manifest template 'MANIFEST.in'
2021-07-13T18:18:45,608   warning: no files found matching 'LICENSE.txt'
2021-07-13T18:18:45,685   writing manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2021-07-13T18:18:45,697   copying src/ampal/geometry.c -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,781   copying src/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,892   copying src/ampal/geometry.pyx -> build/lib.linux-armv7l-3.9/ampal
2021-07-13T18:18:45,899   creating build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,901   copying src/ampal/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,905   copying src/ampal/__pycache__/align.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,909   copying src/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,918   copying src/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,922   copying src/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,928   copying src/ampal/__pycache__/assembly.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,934   copying src/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,939   copying src/ampal/__pycache__/data.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,943   copying src/ampal/__pycache__/dssp.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,947   copying src/ampal/__pycache__/interactions.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,957   copying src/ampal/__pycache__/ligands.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,961   copying src/ampal/__pycache__/naccess.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,964   copying src/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,969   copying src/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,972   copying src/ampal/__pycache__/protein.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,977   copying src/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/lib.linux-armv7l-3.9/ampal/__pycache__
2021-07-13T18:18:45,981   creating build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T18:18:45,982   copying src/ampal/datafiles/amino_acids.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T18:18:45,991   copying src/ampal/datafiles/chemical_elements.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T18:18:45,997   copying src/ampal/datafiles/pdb_atom_column_format.json -> build/lib.linux-armv7l-3.9/ampal/datafiles
2021-07-13T18:18:46,006   running build_ext
2021-07-13T18:18:46,027   building 'ampal.geometry' extension
2021-07-13T18:18:46,028   creating build/temp.linux-armv7l-3.9
2021-07-13T18:18:46,029   creating build/temp.linux-armv7l-3.9/src
2021-07-13T18:18:46,030   creating build/temp.linux-armv7l-3.9/src/ampal
2021-07-13T18:18:46,031   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/ampal/geometry.c -o build/temp.linux-armv7l-3.9/src/ampal/geometry.o
2021-07-13T18:18:51,065   src/ampal/geometry.c:3694:18: warning: ‘__pyx_f_5ampal_8geometry__unit_vector’ defined but not used [-Wunused-function]
2021-07-13T18:18:51,066    3694 | static PyObject *__pyx_f_5ampal_8geometry__unit_vector(double *__pyx_v_a) {
2021-07-13T18:18:51,066         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T18:18:51,067   src/ampal/geometry.c:2911:15: warning: ‘__pyx_f_5ampal_8geometry__dot_product_2d’ defined but not used [-Wunused-function]
2021-07-13T18:18:51,067    2911 | static double __pyx_f_5ampal_8geometry__dot_product_2d(double *__pyx_v_a, double *__pyx_v_b) {
2021-07-13T18:18:51,068         |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-13T18:20:06,976   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/ampal/geometry.o -o build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so
2021-07-13T18:20:07,349   installing to build/bdist.linux-armv7l/wheel
2021-07-13T18:20:07,350   running install
2021-07-13T18:20:07,353   running install_lib
2021-07-13T18:20:07,361   creating build/bdist.linux-armv7l
2021-07-13T18:20:07,363   creating build/bdist.linux-armv7l/wheel
2021-07-13T18:20:07,367   creating build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,370   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,442   copying build/lib.linux-armv7l-3.9/ampal/ampal_warnings.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,446   copying build/lib.linux-armv7l-3.9/ampal/geometry.pyx -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,452   copying build/lib.linux-armv7l-3.9/ampal/geometry.c -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,498   creating build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,500   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,505   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,510   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,515   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ligands.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,520   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/align.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,524   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,529   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/interactions.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,534   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,538   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,542   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/assembly.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,548   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/dssp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,553   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,559   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,565   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,571   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/naccess.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,577   copying build/lib.linux-armv7l-3.9/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2021-07-13T18:20:07,599   copying build/lib.linux-armv7l-3.9/ampal/data.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,603   copying build/lib.linux-armv7l-3.9/ampal/ligands.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,607   copying build/lib.linux-armv7l-3.9/ampal/assembly.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,613   copying build/lib.linux-armv7l-3.9/ampal/naccess.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,617   copying build/lib.linux-armv7l-3.9/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,761   copying build/lib.linux-armv7l-3.9/ampal/pdb_parser.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,766   copying build/lib.linux-armv7l-3.9/ampal/nucleic_acid.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,769   copying build/lib.linux-armv7l-3.9/ampal/interactions.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,773   copying build/lib.linux-armv7l-3.9/ampal/pseudo_atoms.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,778   creating build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T18:20:07,779   copying build/lib.linux-armv7l-3.9/ampal/datafiles/pdb_atom_column_format.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T18:20:07,784   copying build/lib.linux-armv7l-3.9/ampal/datafiles/amino_acids.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T18:20:07,790   copying build/lib.linux-armv7l-3.9/ampal/datafiles/chemical_elements.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2021-07-13T18:20:07,795   copying build/lib.linux-armv7l-3.9/ampal/__init__.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,797   copying build/lib.linux-armv7l-3.9/ampal/align.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,801   copying build/lib.linux-armv7l-3.9/ampal/base_ampal.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,804   copying build/lib.linux-armv7l-3.9/ampal/dssp.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,808   copying build/lib.linux-armv7l-3.9/ampal/amino_acids.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,812   copying build/lib.linux-armv7l-3.9/ampal/analyse_protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,817   copying build/lib.linux-armv7l-3.9/ampal/protein.py -> build/bdist.linux-armv7l/wheel/ampal
2021-07-13T18:20:07,822   running install_egg_info
2021-07-13T18:20:07,841   Copying src/AMPAL.egg-info to build/bdist.linux-armv7l/wheel/AMPAL-1.3.0-py3.9.egg-info
2021-07-13T18:20:07,868   running install_scripts
2021-07-13T18:20:07,987   creating build/bdist.linux-armv7l/wheel/AMPAL-1.3.0.dist-info/WHEEL
2021-07-13T18:20:07,992   creating '/tmp/pip-wheel-9rlocfa5/AMPAL-1.3.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-13T18:20:07,999   adding 'ampal/__init__.py'
2021-07-13T18:20:08,002   adding 'ampal/align.py'
2021-07-13T18:20:08,006   adding 'ampal/amino_acids.py'
2021-07-13T18:20:08,008   adding 'ampal/ampal_warnings.py'
2021-07-13T18:20:08,013   adding 'ampal/analyse_protein.py'
2021-07-13T18:20:08,017   adding 'ampal/assembly.py'
2021-07-13T18:20:08,021   adding 'ampal/base_ampal.py'
2021-07-13T18:20:08,023   adding 'ampal/data.py'
2021-07-13T18:20:08,025   adding 'ampal/dssp.py'
2021-07-13T18:20:08,176   adding 'ampal/geometry.c'
2021-07-13T18:20:08,841   adding 'ampal/geometry.cpython-36m-x86_64-linux-gnu.so'
2021-07-13T18:20:09,648   adding 'ampal/geometry.cpython-39-arm-linux-gnueabihf.so'
2021-07-13T18:20:09,677   adding 'ampal/geometry.pyx'
2021-07-13T18:20:09,680   adding 'ampal/interactions.py'
2021-07-13T18:20:09,682   adding 'ampal/ligands.py'
2021-07-13T18:20:09,684   adding 'ampal/naccess.py'
2021-07-13T18:20:09,686   adding 'ampal/nucleic_acid.py'
2021-07-13T18:20:09,690   adding 'ampal/pdb_parser.py'
2021-07-13T18:20:09,697   adding 'ampal/protein.py'
2021-07-13T18:20:09,700   adding 'ampal/pseudo_atoms.py'
2021-07-13T18:20:09,703   adding 'ampal/__pycache__/__init__.cpython-36.pyc'
2021-07-13T18:20:09,705   adding 'ampal/__pycache__/align.cpython-36.pyc'
2021-07-13T18:20:09,708   adding 'ampal/__pycache__/amino_acids.cpython-36.pyc'
2021-07-13T18:20:09,710   adding 'ampal/__pycache__/ampal_warnings.cpython-36.pyc'
2021-07-13T18:20:09,715   adding 'ampal/__pycache__/analyse_protein.cpython-36.pyc'
2021-07-13T18:20:09,719   adding 'ampal/__pycache__/assembly.cpython-36.pyc'
2021-07-13T18:20:09,724   adding 'ampal/__pycache__/base_ampal.cpython-36.pyc'
2021-07-13T18:20:09,726   adding 'ampal/__pycache__/data.cpython-36.pyc'
2021-07-13T18:20:09,729   adding 'ampal/__pycache__/dssp.cpython-36.pyc'
2021-07-13T18:20:09,732   adding 'ampal/__pycache__/interactions.cpython-36.pyc'
2021-07-13T18:20:09,734   adding 'ampal/__pycache__/ligands.cpython-36.pyc'
2021-07-13T18:20:09,736   adding 'ampal/__pycache__/naccess.cpython-36.pyc'
2021-07-13T18:20:09,738   adding 'ampal/__pycache__/nucleic_acid.cpython-36.pyc'
2021-07-13T18:20:09,742   adding 'ampal/__pycache__/pdb_parser.cpython-36.pyc'
2021-07-13T18:20:09,749   adding 'ampal/__pycache__/protein.cpython-36.pyc'
2021-07-13T18:20:09,752   adding 'ampal/__pycache__/pseudo_atoms.cpython-36.pyc'
2021-07-13T18:20:09,762   adding 'ampal/datafiles/amino_acids.json'
2021-07-13T18:20:09,769   adding 'ampal/datafiles/chemical_elements.json'
2021-07-13T18:20:09,796   adding 'ampal/datafiles/pdb_atom_column_format.json'
2021-07-13T18:20:09,802   adding 'AMPAL-1.3.0.dist-info/METADATA'
2021-07-13T18:20:09,818   adding 'AMPAL-1.3.0.dist-info/WHEEL'
2021-07-13T18:20:09,819   adding 'AMPAL-1.3.0.dist-info/top_level.txt'
2021-07-13T18:20:09,821   adding 'AMPAL-1.3.0.dist-info/RECORD'
2021-07-13T18:20:09,860   removing build/bdist.linux-armv7l/wheel
2021-07-13T18:20:10,174   Building wheel for ampal (setup.py): finished with status 'done'
2021-07-13T18:20:10,249   Created wheel for ampal: filename=AMPAL-1.3.0-cp39-cp39-linux_armv7l.whl size=2117026 sha256=b73f51fd6feb1fa2d01e8ec866ffb942cfeefb981066f427ed80d707d41fd359
2021-07-13T18:20:10,250   Stored in directory: /tmp/pip-ephem-wheel-cache-51tmabww/wheels/b6/42/dc/43f77ccdfbda0bdb683377678d54fd9c17c38dd98466aec72b
2021-07-13T18:20:10,277 Successfully built ampal
2021-07-13T18:20:10,403 Removed build tracker: '/tmp/pip-req-tracker-umrtj9fj'