2021-07-13T18:28:33,997 Created temporary directory: /tmp/pip-ephem-wheel-cache-bibu76qr 2021-07-13T18:28:34,000 Created temporary directory: /tmp/pip-req-tracker-j30yuvt2 2021-07-13T18:28:34,000 Initialized build tracking at /tmp/pip-req-tracker-j30yuvt2 2021-07-13T18:28:34,000 Created build tracker: /tmp/pip-req-tracker-j30yuvt2 2021-07-13T18:28:34,000 Entered build tracker: /tmp/pip-req-tracker-j30yuvt2 2021-07-13T18:28:34,001 Created temporary directory: /tmp/pip-wheel-w0j9u8z8 2021-07-13T18:28:34,030 1 location(s) to search for versions of mikado: 2021-07-13T18:28:34,030 * https://pypi.org/simple/mikado/ 2021-07-13T18:28:34,030 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2021-07-13T18:28:34,031 Getting page https://pypi.org/simple/mikado/ 2021-07-13T18:28:34,032 Found index url https://pypi.org/simple 2021-07-13T18:28:34,222 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2021-07-13T18:28:34,222 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2021-07-13T18:28:34,223 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2021-07-13T18:28:34,223 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0 2021-07-13T18:28:34,223 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1 2021-07-13T18:28:34,224 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2 2021-07-13T18:28:34,224 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1 2021-07-13T18:28:34,224 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2 2021-07-13T18:28:34,241 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/) 2021-07-13T18:28:34,242 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4 2021-07-13T18:28:34,242 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1 2021-07-13T18:28:34,242 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2 2021-07-13T18:28:34,246 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2021-07-13T18:28:34,247 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2021-07-13T18:28:34,247 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2021-07-13T18:28:34,248 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2021-07-13T18:28:34,248 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2021-07-13T18:28:34,249 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2021-07-13T18:28:34,250 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2021-07-13T18:28:34,250 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2021-07-13T18:28:34,251 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2021-07-13T18:28:34,251 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2021-07-13T18:28:34,252 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2021-07-13T18:28:34,252 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2021-07-13T18:28:34,253 Skipping link: not a file: https://pypi.org/simple/mikado/ 2021-07-13T18:28:34,256 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2021-07-13T18:28:34,275 Collecting mikado==1.2.4 2021-07-13T18:28:34,277 Created temporary directory: /tmp/pip-unpack-snu0r1pc 2021-07-13T18:28:34,317 Downloading Mikado-1.2.4.tar.gz (19.9 MB) 2021-07-13T18:28:40,777 Added mikado==1.2.4 from https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 to build tracker '/tmp/pip-req-tracker-j30yuvt2' 2021-07-13T18:28:40,778 Running setup.py (path:/tmp/pip-wheel-w0j9u8z8/mikado_7284b41d470f4648849550e8ca2f5b08/setup.py) egg_info for package mikado 2021-07-13T18:28:40,779 Created temporary directory: /tmp/pip-pip-egg-info-5_qj2zsd 2021-07-13T18:28:40,779 Running command python setup.py egg_info 2021-07-13T18:28:42,762 running egg_info 2021-07-13T18:28:42,764 creating /tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info 2021-07-13T18:28:42,765 writing /tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/PKG-INFO 2021-07-13T18:28:42,768 writing dependency_links to /tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/dependency_links.txt 2021-07-13T18:28:42,769 writing entry points to /tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/entry_points.txt 2021-07-13T18:28:42,771 writing requirements to /tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/requires.txt 2021-07-13T18:28:42,772 writing top-level names to /tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/top_level.txt 2021-07-13T18:28:42,774 writing manifest file '/tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/SOURCES.txt' 2021-07-13T18:28:42,969 reading manifest file '/tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/SOURCES.txt' 2021-07-13T18:28:42,970 reading manifest template 'MANIFEST.in' 2021-07-13T18:28:44,216 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-13T18:28:44,216 adding license file 'AUTHORS' 2021-07-13T18:28:44,276 writing manifest file '/tmp/pip-pip-egg-info-5_qj2zsd/Mikado.egg-info/SOURCES.txt' 2021-07-13T18:28:44,379 Source in /tmp/pip-wheel-w0j9u8z8/mikado_7284b41d470f4648849550e8ca2f5b08 has version 1.2.4, which satisfies requirement mikado==1.2.4 from https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 2021-07-13T18:28:44,380 Removed mikado==1.2.4 from https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 from build tracker '/tmp/pip-req-tracker-j30yuvt2' 2021-07-13T18:28:44,384 Created temporary directory: /tmp/pip-unpack-b8d__5he 2021-07-13T18:28:44,385 Building wheels for collected packages: mikado 2021-07-13T18:28:44,390 Created temporary directory: /tmp/pip-wheel-vvp59pr1 2021-07-13T18:28:44,391 Building wheel for mikado (setup.py): started 2021-07-13T18:28:44,391 Destination directory: /tmp/pip-wheel-vvp59pr1 2021-07-13T18:28:44,391 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w0j9u8z8/mikado_7284b41d470f4648849550e8ca2f5b08/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w0j9u8z8/mikado_7284b41d470f4648849550e8ca2f5b08/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vvp59pr1 2021-07-13T18:28:46,355 running bdist_wheel 2021-07-13T18:28:46,361 running build 2021-07-13T18:28:46,361 running build_py 2021-07-13T18:28:46,520 creating build/lib.linux-armv7l-3.9 2021-07-13T18:28:46,520 creating build/lib.linux-armv7l-3.9/Mikado 2021-07-13T18:28:46,521 copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T18:28:46,524 copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T18:28:46,526 copying Mikado/version.py -> build/lib.linux-armv7l-3.9/Mikado 2021-07-13T18:28:46,529 creating build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,530 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,532 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,534 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,538 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,540 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,542 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,544 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,546 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,549 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,552 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,555 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,560 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,562 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,565 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,568 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,570 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,573 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,575 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,578 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,580 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,583 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,585 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,589 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,592 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,594 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:46,597 creating build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,597 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,599 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,601 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,605 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,607 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,610 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:46,614 creating build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T18:28:46,615 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T18:28:46,617 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T18:28:46,620 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking 2021-07-13T18:28:46,625 creating build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,625 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,628 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,630 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,633 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,636 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,638 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,640 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms 2021-07-13T18:28:46,644 creating build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T18:28:46,645 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T18:28:46,648 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T18:28:46,651 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T18:28:46,654 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts 2021-07-13T18:28:46,660 creating build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T18:28:46,661 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T18:28:46,663 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T18:28:46,666 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T18:28:46,668 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers 2021-07-13T18:28:46,672 creating build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,673 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,675 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,677 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,680 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,682 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,685 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,688 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers 2021-07-13T18:28:46,692 creating build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T18:28:46,693 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T18:28:46,695 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T18:28:46,697 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T18:28:46,700 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation 2021-07-13T18:28:46,703 creating build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:46,704 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:46,708 creating build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,709 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,711 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,713 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,716 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,719 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,723 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,725 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,728 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,730 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci 2021-07-13T18:28:46,734 creating build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:46,734 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:46,737 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:46,739 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:46,742 creating build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:46,743 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:46,745 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:46,748 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:46,752 creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,753 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,755 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,757 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,760 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,762 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,764 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,766 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,768 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,772 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util 2021-07-13T18:28:46,775 creating build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T18:28:46,775 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T18:28:46,778 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T18:28:46,781 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T18:28:46,784 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T18:28:46,787 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods 2021-07-13T18:28:46,791 creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,792 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,794 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,796 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,798 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,802 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,805 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,809 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer 2021-07-13T18:28:46,812 running egg_info 2021-07-13T18:28:46,828 writing Mikado.egg-info/PKG-INFO 2021-07-13T18:28:46,830 writing dependency_links to Mikado.egg-info/dependency_links.txt 2021-07-13T18:28:46,832 writing entry points to Mikado.egg-info/entry_points.txt 2021-07-13T18:28:46,834 writing requirements to Mikado.egg-info/requires.txt 2021-07-13T18:28:46,835 writing top-level names to Mikado.egg-info/top_level.txt 2021-07-13T18:28:46,852 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-13T18:28:46,943 reading manifest template 'MANIFEST.in' 2021-07-13T18:28:48,248 warning: no previously-included files matching '*' found under directory 'docs/' 2021-07-13T18:28:48,248 adding license file 'AUTHORS' 2021-07-13T18:28:48,341 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2021-07-13T18:28:48,428 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,586 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,588 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,591 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,593 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,598 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,605 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,635 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,673 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,677 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,679 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,681 copying Mikado/tests/trinity.bed12 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,684 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,686 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,690 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,693 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,696 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,698 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests 2021-07-13T18:28:48,839 creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,840 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,842 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,845 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,848 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,852 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,854 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,857 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,859 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,862 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,864 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,867 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,869 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,871 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,874 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,876 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,879 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,881 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,884 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,887 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,890 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,893 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,896 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,899 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,903 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,906 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__ 2021-07-13T18:28:48,909 creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T18:28:48,910 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T18:28:48,912 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T18:28:48,914 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test 2021-07-13T18:28:48,917 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:48,929 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:48,931 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:48,934 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:48,939 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:48,941 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:48,943 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:48,946 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:48,948 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:48,950 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:48,953 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin 2021-07-13T18:28:48,956 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:48,973 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:48,976 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:48,982 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:48,984 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:48,986 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:48,989 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:48,992 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:48,994 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration 2021-07-13T18:28:48,996 creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:48,997 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:48,999 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,001 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,004 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,006 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,008 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,010 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,013 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,015 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files 2021-07-13T18:28:49,029 running build_ext 2021-07-13T18:28:49,034 building 'Mikado.utilities.overlap' extension 2021-07-13T18:28:49,034 creating build/temp.linux-armv7l-3.9 2021-07-13T18:28:49,034 creating build/temp.linux-armv7l-3.9/Mikado 2021-07-13T18:28:49,035 creating build/temp.linux-armv7l-3.9/Mikado/utilities 2021-07-13T18:28:49,036 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o 2021-07-13T18:28:49,446 Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T18:28:49,447 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,448 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,448 | ^ 2021-07-13T18:28:49,448 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,448 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,448 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,448 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,449 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,449 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,449 Mikado/utilities/overlap.c:2763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,450 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,450 | ^ 2021-07-13T18:28:49,450 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,450 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,450 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,450 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:49,450 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:49,450 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,451 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,451 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,451 | ^ 2021-07-13T18:28:49,451 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,451 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,452 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,452 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,452 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,452 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,452 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,453 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,453 | ^ 2021-07-13T18:28:49,453 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,453 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,453 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,453 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,453 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,453 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,454 Mikado/utilities/overlap.c:2763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,454 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,454 | ^ 2021-07-13T18:28:49,454 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,454 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,454 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,455 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:49,455 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:49,455 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,455 Mikado/utilities/overlap.c:2763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,455 2763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,456 | ^ 2021-07-13T18:28:49,456 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,456 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,456 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,456 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,456 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,456 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,457 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,458 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,458 | ^ 2021-07-13T18:28:49,458 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,458 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,458 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,458 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,458 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,458 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,459 Mikado/utilities/overlap.c:2779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,459 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,459 | ^ 2021-07-13T18:28:49,459 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,459 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,460 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,460 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:49,460 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:49,460 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,460 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,461 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,461 | ^ 2021-07-13T18:28:49,461 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,461 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,461 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,461 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,461 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,461 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,462 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,462 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,462 | ^ 2021-07-13T18:28:49,462 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,462 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,463 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,463 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,463 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,463 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,463 Mikado/utilities/overlap.c:2779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,464 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,464 | ^ 2021-07-13T18:28:49,464 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,464 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,464 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,464 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:49,464 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:49,464 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:49,465 Mikado/utilities/overlap.c:2779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:49,465 2779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:49,465 | ^ 2021-07-13T18:28:49,465 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:49,465 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:49,465 from Mikado/utilities/overlap.c:16: 2021-07-13T18:28:49,466 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:49,466 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:49,466 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,310 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so 2021-07-13T18:28:51,426 building 'Mikado.scales.f1' extension 2021-07-13T18:28:51,427 creating build/temp.linux-armv7l-3.9/Mikado/scales 2021-07-13T18:28:51,427 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o 2021-07-13T18:28:51,817 Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T18:28:51,819 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,819 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,819 | ^ 2021-07-13T18:28:51,820 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,820 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,820 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,820 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,821 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,821 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,822 Mikado/scales/f1.c:2581:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,822 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,822 | ^ 2021-07-13T18:28:51,823 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,823 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,823 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,823 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:51,823 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:51,823 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,825 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,825 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,825 | ^ 2021-07-13T18:28:51,825 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,825 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,826 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,826 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,826 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,827 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,828 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,828 | ^ 2021-07-13T18:28:51,828 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,828 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,828 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,828 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,828 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,828 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,830 Mikado/scales/f1.c:2581:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,830 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,830 | ^ 2021-07-13T18:28:51,831 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,831 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,831 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,831 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:51,831 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:51,831 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,833 Mikado/scales/f1.c:2581:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,833 2581 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,833 | ^ 2021-07-13T18:28:51,833 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,833 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,833 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,834 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,834 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,836 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,836 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,836 | ^ 2021-07-13T18:28:51,836 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,837 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,837 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,837 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,837 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,837 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,839 Mikado/scales/f1.c:2597:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,839 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,839 | ^ 2021-07-13T18:28:51,839 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,839 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,839 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,839 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:51,840 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:51,840 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,841 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,841 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,841 | ^ 2021-07-13T18:28:51,842 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,842 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,842 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,842 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,842 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,842 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,844 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,844 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,844 | ^ 2021-07-13T18:28:51,844 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,844 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,844 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,845 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,845 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,845 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,846 Mikado/scales/f1.c:2597:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,846 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,846 | ^ 2021-07-13T18:28:51,847 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,847 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,847 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,847 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:51,847 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:51,847 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:51,849 Mikado/scales/f1.c:2597:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:51,849 2597 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:51,849 | ^ 2021-07-13T18:28:51,849 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:51,849 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:51,850 from Mikado/scales/f1.c:16: 2021-07-13T18:28:51,850 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:51,850 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:51,850 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,072 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/f1.o -o build/lib.linux-armv7l-3.9/Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so 2021-07-13T18:28:53,182 building 'Mikado.scales.contrast' extension 2021-07-13T18:28:53,183 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o 2021-07-13T18:28:53,721 Mikado/scales/contrast.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T18:28:53,725 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,725 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,725 | ^ 2021-07-13T18:28:53,726 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,726 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,726 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,726 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,726 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,726 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,731 Mikado/scales/contrast.c:8326:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,731 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,731 | ^ 2021-07-13T18:28:53,731 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,731 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,731 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,731 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:53,732 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:53,732 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,736 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,736 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,736 | ^ 2021-07-13T18:28:53,736 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,736 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,736 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,736 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,737 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,737 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,741 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,741 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,741 | ^ 2021-07-13T18:28:53,741 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,741 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,741 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,741 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,741 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,742 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,745 Mikado/scales/contrast.c:8326:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,746 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,746 | ^ 2021-07-13T18:28:53,746 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,746 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,746 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,746 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:53,746 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:53,746 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,750 Mikado/scales/contrast.c:8326:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,751 8326 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,751 | ^ 2021-07-13T18:28:53,751 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,751 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,751 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,751 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,751 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,751 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,757 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,757 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,757 | ^ 2021-07-13T18:28:53,757 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,757 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,757 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,757 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,758 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,758 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,762 Mikado/scales/contrast.c:8342:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,762 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,762 | ^ 2021-07-13T18:28:53,762 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,762 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,762 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,762 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:53,762 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:53,763 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,766 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,767 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,767 | ^ 2021-07-13T18:28:53,767 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,767 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,767 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,767 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,767 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,767 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,772 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,772 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,772 | ^ 2021-07-13T18:28:53,772 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,772 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,772 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,772 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,772 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,773 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,776 Mikado/scales/contrast.c:8342:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,777 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,777 | ^ 2021-07-13T18:28:53,777 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,777 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,777 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,777 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:28:53,777 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:28:53,777 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:28:53,781 Mikado/scales/contrast.c:8342:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:28:53,782 8342 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:28:53,782 | ^ 2021-07-13T18:28:53,782 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:28:53,782 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:28:53,782 from Mikado/scales/contrast.c:16: 2021-07-13T18:28:53,782 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:28:53,782 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:28:53,782 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:03,860 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o -o build/lib.linux-armv7l-3.9/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so 2021-07-13T18:29:03,991 building 'Mikado.utilities.intervaltree' extension 2021-07-13T18:29:03,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/intervaltree.o 2021-07-13T18:29:04,574 Mikado/utilities/intervaltree.c: In function ‘__Pyx_modinit_type_init_code’: 2021-07-13T18:29:04,580 Mikado/utilities/intervaltree.c:12138:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T18:29:04,581 12138 | __pyx_type_6Mikado_9utilities_12intervaltree_IntervalNode.tp_print = 0; 2021-07-13T18:29:04,581 | ^ 2021-07-13T18:29:04,587 Mikado/utilities/intervaltree.c:12149:56: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T18:29:04,587 12149 | __pyx_type_6Mikado_9utilities_12intervaltree_Interval.tp_print = 0; 2021-07-13T18:29:04,587 | ^ 2021-07-13T18:29:04,594 Mikado/utilities/intervaltree.c:12158:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-13T18:29:04,594 12158 | __pyx_type_6Mikado_9utilities_12intervaltree_IntervalTree.tp_print = 0; 2021-07-13T18:29:04,594 | ^ 2021-07-13T18:29:04,612 Mikado/utilities/intervaltree.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-13T18:29:04,618 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,619 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,619 | ^ 2021-07-13T18:29:04,619 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,619 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,619 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,619 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,620 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,620 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,627 Mikado/utilities/intervaltree.c:12722:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,627 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,627 | ^ 2021-07-13T18:29:04,627 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,627 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,628 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,628 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:29:04,628 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:29:04,628 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,635 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,635 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,635 | ^ 2021-07-13T18:29:04,635 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,635 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,635 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,635 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,636 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,636 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,643 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,643 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,643 | ^ 2021-07-13T18:29:04,643 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,643 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,643 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,643 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,644 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,644 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,650 Mikado/utilities/intervaltree.c:12722:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,651 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,651 | ^ 2021-07-13T18:29:04,651 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,651 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,651 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,651 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:29:04,651 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:29:04,651 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,658 Mikado/utilities/intervaltree.c:12722:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,658 12722 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,659 | ^ 2021-07-13T18:29:04,659 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,659 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,659 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,659 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,659 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,659 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,668 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,668 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,668 | ^ 2021-07-13T18:29:04,668 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,668 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,669 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,669 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,669 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,669 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,675 Mikado/utilities/intervaltree.c:12738:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,676 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,676 | ^ 2021-07-13T18:29:04,676 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,676 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,676 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,676 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:29:04,676 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:29:04,677 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,683 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,684 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,684 | ^ 2021-07-13T18:29:04,684 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,684 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,684 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,684 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,684 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,685 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,691 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,692 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,692 | ^ 2021-07-13T18:29:04,692 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,692 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,692 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,692 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,692 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,692 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,699 Mikado/utilities/intervaltree.c:12738:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,699 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,700 | ^ 2021-07-13T18:29:04,700 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,700 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,700 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,700 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-13T18:29:04,700 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-13T18:29:04,700 | ^~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:04,707 Mikado/utilities/intervaltree.c:12738:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-13T18:29:04,707 12738 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-13T18:29:04,708 | ^ 2021-07-13T18:29:04,708 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-13T18:29:04,708 from /usr/include/python3.9/Python.h:97, 2021-07-13T18:29:04,708 from Mikado/utilities/intervaltree.c:17: 2021-07-13T18:29:04,708 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-13T18:29:04,708 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-13T18:29:04,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-13T18:29:05,100 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-13T18:29:05,212 Building wheel for mikado (setup.py): finished with status 'error' 2021-07-13T18:29:05,212 ERROR: Failed building wheel for mikado 2021-07-13T18:29:05,213 Running setup.py clean for mikado 2021-07-13T18:29:05,213 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-w0j9u8z8/mikado_7284b41d470f4648849550e8ca2f5b08/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-w0j9u8z8/mikado_7284b41d470f4648849550e8ca2f5b08/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-13T18:29:07,134 running clean 2021-07-13T18:29:07,137 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-13T18:29:07,141 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-13T18:29:07,231 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-13T18:29:07,231 'build/scripts-3.9' does not exist -- can't clean it 2021-07-13T18:29:07,325 Failed to build mikado 2021-07-13T18:29:07,326 ERROR: Failed to build one or more wheels 2021-07-13T18:29:07,327 Exception information: 2021-07-13T18:29:07,327 Traceback (most recent call last): 2021-07-13T18:29:07,327 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T18:29:07,327 status = self.run(options, args) 2021-07-13T18:29:07,327 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T18:29:07,327 return func(self, options, args) 2021-07-13T18:29:07,327 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-13T18:29:07,327 raise CommandError( 2021-07-13T18:29:07,327 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-13T18:29:07,329 Removed build tracker: '/tmp/pip-req-tracker-j30yuvt2'