2021-07-13T18:52:36,874 Created temporary directory: /tmp/pip-ephem-wheel-cache-xw14jmxb 2021-07-13T18:52:36,877 Created temporary directory: /tmp/pip-req-tracker-ptxnoncb 2021-07-13T18:52:36,877 Initialized build tracking at /tmp/pip-req-tracker-ptxnoncb 2021-07-13T18:52:36,878 Created build tracker: /tmp/pip-req-tracker-ptxnoncb 2021-07-13T18:52:36,878 Entered build tracker: /tmp/pip-req-tracker-ptxnoncb 2021-07-13T18:52:36,878 Created temporary directory: /tmp/pip-wheel-0ie2gcvb 2021-07-13T18:52:36,908 1 location(s) to search for versions of libnano: 2021-07-13T18:52:36,908 * https://pypi.org/simple/libnano/ 2021-07-13T18:52:36,908 Fetching project page and analyzing links: https://pypi.org/simple/libnano/ 2021-07-13T18:52:36,909 Getting page https://pypi.org/simple/libnano/ 2021-07-13T18:52:36,910 Found index url https://pypi.org/simple 2021-07-13T18:52:37,021 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/1c/56/4b638e208d676e55ed11418337d7732bf5930de7d3ca197ae4174e0e945d/libnano-0.1.1.1-cp36-cp36m-macosx_10_10_x86_64.whl#sha256=a1cb088527dfa29b558ac87f0fe738a8d261b6737a6d7a7e7afb17173998f205 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,021 Found link https://files.pythonhosted.org/packages/06/9a/7c0fec038abaa2fc52a0a0635b00e73bc689c0528670aa5b96ed9c0d2bab/libnano-0.1.1.1.tar.gz#sha256=352c4f908b61892b31cccf7b2b6c1e959708ac56b77c383376254ab402d749a1 (from https://pypi.org/simple/libnano/), version: 0.1.1.1 2021-07-13T18:52:37,022 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/88/76/ad4de2d7f145b9fa66758481106b58d250a669559b917bc9b696b79c3a02/libnano-0.1.1.3-cp36-cp36m-macosx_10_10_x86_64.whl#sha256=8ebb6b0b1352048aa2f95b0035eac4ef14595fb153ab4712a899edaf0d197fe4 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,022 Skipping link: none of the wheel's tags (cp36-cp36m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/84/ef/ec4e045c9cda34c249d509637fcb0c33b5b161ba37dd62e3e9d956ffc341/libnano-0.1.1.3-cp36-cp36m-win_amd64.whl#sha256=f273a5569a2f08214740b7663e22106e72b2ca3640b6a1e3ee9c20cef7733cc4 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,022 Found link https://files.pythonhosted.org/packages/f2/96/614dee55cbd312744bd02b60a877abda9ed52223070509cc9bd7a8a6f200/libnano-0.1.1.3.tar.gz#sha256=0884c16cc572086e56efc69f94a6402cbd3cc952c0beee19a435236223e5ac3f (from https://pypi.org/simple/libnano/), version: 0.1.1.3 2021-07-13T18:52:37,023 Skipping link: none of the wheel's tags (cp36-cp36m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/bb/62/5647c7e6990de3c5ef2724c4021aa64e37318b058c44f86c0a22fc203255/libnano-0.2.0.0-cp36-cp36m-win_amd64.whl#sha256=ade8654471cfe4a394a54d898393b95b8d35285f3438467567c388fec2a1a772 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,023 Skipping link: none of the wheel's tags (cp36-cp36m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/df/5e/3cb8809c58f2ab23b551364403b6129b32394ae051ac4469f8c3b93f5a01/libnano-0.2.1.0-cp36-cp36m-win_amd64.whl#sha256=82ac0541ff92863d606de28bd4fad0ec7684a95e953c52f2ece02f1ace7f2027 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,024 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/17/c6/3b1ee948a1029affb74d1e82fc913d862495d000f23e1a7c560f6b779241/libnano-0.2.2.0-cp36-cp36m-macosx_10_10_x86_64.whl#sha256=298d937476ee93b625a77473b026d135ed364555997edc4f6675e9a344beb984 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,024 Skipping link: none of the wheel's tags (cp36-cp36m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a9/c3/88ee4c76805371457f731ccf572c37cea0d790cb9c093a4f154c52c4a3ac/libnano-0.2.2.0-cp36-cp36m-win_amd64.whl#sha256=4fc5e863d5fd0f97fb317274623c09746e3ee0f302e6f929de8b32ba5f45052b (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,025 Found link https://files.pythonhosted.org/packages/01/52/3aaab3109334438c77d98bb9599e000fd690213a2a3149bfad6e8a868fb8/libnano-0.2.2.0.tar.gz#sha256=79b3260dc52380548d4ca0dda47af997d211e1ddaebd4df43cae38e0d885fd54 (from https://pypi.org/simple/libnano/), version: 0.2.2.0 2021-07-13T18:52:37,025 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/cf/1b/c67c9cc92c58796895599d528bf04b76a0459f1c8b69f171feca2600ae14/libnano-0.2.3.0-cp36-cp36m-macosx_10_10_x86_64.whl#sha256=3b8f7a76b6e2870aeb14ef6fb2d2cd60cadf68dd7151ccaccadcf6e3cd7dfd10 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,025 Skipping link: none of the wheel's tags (cp36-cp36m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/4a/fa/2ceace20e498c9d5f01e898a052f9da465cc138d9f6edcbecabadb207952/libnano-0.2.3.0-cp36-cp36m-win_amd64.whl#sha256=33d3f0628b19f5a79aa3fdee468c70a6385475431b14548a0b4f139ee0d5f412 (from https://pypi.org/simple/libnano/) 2021-07-13T18:52:37,026 Found link https://files.pythonhosted.org/packages/77/e6/49f98e4537b0a2531fa36ed9e45e272f3ea4ac99a154e10628011d68e647/libnano-0.2.3.0.tar.gz#sha256=0c36b41f3d362d781a9bd98a6382b95fadca0a7393889839d75fad01d2679bf6 (from https://pypi.org/simple/libnano/), version: 0.2.3.0 2021-07-13T18:52:37,026 Skipping link: not a file: https://pypi.org/simple/libnano/ 2021-07-13T18:52:37,027 Given no hashes to check 1 links for project 'libnano': discarding no candidates 2021-07-13T18:52:37,046 Collecting libnano==0.2.3.0 2021-07-13T18:52:37,048 Created temporary directory: /tmp/pip-unpack-sa_rzioo 2021-07-13T18:52:37,641 Downloading libnano-0.2.3.0.tar.gz (1.7 MB) 2021-07-13T18:52:38,626 Added libnano==0.2.3.0 from https://files.pythonhosted.org/packages/77/e6/49f98e4537b0a2531fa36ed9e45e272f3ea4ac99a154e10628011d68e647/libnano-0.2.3.0.tar.gz#sha256=0c36b41f3d362d781a9bd98a6382b95fadca0a7393889839d75fad01d2679bf6 to build tracker '/tmp/pip-req-tracker-ptxnoncb' 2021-07-13T18:52:38,628 Running setup.py (path:/tmp/pip-wheel-0ie2gcvb/libnano_07d0cc245aa44048b1684705f566d955/setup.py) egg_info for package libnano 2021-07-13T18:52:38,628 Created temporary directory: /tmp/pip-pip-egg-info-ev2utfr3 2021-07-13T18:52:38,629 Running command python setup.py egg_info 2021-07-13T18:52:41,445 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0ie2gcvb/libnano_07d0cc245aa44048b1684705f566d955/libnano/cymem/cymem.pyx 2021-07-13T18:52:41,446 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-13T18:52:41,712 Error compiling Cython file: 2021-07-13T18:52:41,712 ------------------------------------------------------------ 2021-07-13T18:52:41,713 ... 2021-07-13T18:52:41,713 Attributes: 2021-07-13T18:52:41,713 ptr (void*): Pointer to the memory block. 2021-07-13T18:52:41,713 addr (size_t): Read-only size_t cast of the pointer. 2021-07-13T18:52:41,713 """ 2021-07-13T18:52:41,713 def __cinit__(self, size_t number, size_t elem_size): 2021-07-13T18:52:41,713 self.ptr = NULL 2021-07-13T18:52:41,714 ^ 2021-07-13T18:52:41,714 ------------------------------------------------------------ 2021-07-13T18:52:41,714 libnano/cymem/cymem.pyx:155:19: Cannot convert 'void *' to Python object 2021-07-13T18:52:41,714 Error compiling Cython file: 2021-07-13T18:52:41,714 ------------------------------------------------------------ 2021-07-13T18:52:41,714 ... 2021-07-13T18:52:41,715 """ 2021-07-13T18:52:41,715 def __cinit__(self, size_t number, size_t elem_size): 2021-07-13T18:52:41,715 self.ptr = NULL 2021-07-13T18:52:41,715 def __init__(self, size_t number, size_t elem_size): 2021-07-13T18:52:41,715 self.ptr = PyMem_Malloc(number * elem_size) 2021-07-13T18:52:41,715 ^ 2021-07-13T18:52:41,715 ------------------------------------------------------------ 2021-07-13T18:52:41,716 libnano/cymem/cymem.pyx:158:31: Cannot convert 'void *' to Python object 2021-07-13T18:52:41,716 Error compiling Cython file: 2021-07-13T18:52:41,716 ------------------------------------------------------------ 2021-07-13T18:52:41,716 ... 2021-07-13T18:52:41,716 def __cinit__(self, size_t number, size_t elem_size): 2021-07-13T18:52:41,716 self.ptr = NULL 2021-07-13T18:52:41,717 def __init__(self, size_t number, size_t elem_size): 2021-07-13T18:52:41,717 self.ptr = PyMem_Malloc(number * elem_size) 2021-07-13T18:52:41,717 memset(self.ptr, 0, number * elem_size) 2021-07-13T18:52:41,717 ^ 2021-07-13T18:52:41,717 ------------------------------------------------------------ 2021-07-13T18:52:41,717 libnano/cymem/cymem.pyx:159:19: Cannot convert Python object to 'void *' 2021-07-13T18:52:41,718 Error compiling Cython file: 2021-07-13T18:52:41,718 ------------------------------------------------------------ 2021-07-13T18:52:41,718 ... 2021-07-13T18:52:41,718 property addr: 2021-07-13T18:52:41,718 def __get__(self): 2021-07-13T18:52:41,718 return self.ptr 2021-07-13T18:52:41,718 def __dealloc__(self): 2021-07-13T18:52:41,718 PyMem_Free(self.ptr) ^ 2021-07-13T18:52:41,719 ------------------------------------------------------------ 2021-07-13T18:52:41,719 libnano/cymem/cymem.pyx:166:23: Cannot convert Python object to 'void *' 2021-07-13T18:52:41,768 Traceback (most recent call last): 2021-07-13T18:52:41,769 File "", line 1, in 2021-07-13T18:52:41,769 File "/tmp/pip-wheel-0ie2gcvb/libnano_07d0cc245aa44048b1684705f566d955/setup.py", line 277, in 2021-07-13T18:52:41,769 cython_ext_list = cythonize(cython_extensions, include_path=common_include) 2021-07-13T18:52:41,769 File "/usr/local/lib/python3.9/dist-packages/Cython/Build/Dependencies.py", line 1102, in cythonize 2021-07-13T18:52:41,777 cythonize_one(*args) 2021-07-13T18:52:41,777 File "/usr/local/lib/python3.9/dist-packages/Cython/Build/Dependencies.py", line 1225, in cythonize_one 2021-07-13T18:52:41,778 raise CompileError(None, pyx_file) 2021-07-13T18:52:41,778 Cython.Compiler.Errors.CompileError: libnano/cymem/cymem.pyx 2021-07-13T18:52:41,778 Compiling libnano/metric/seqrepeat.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,779 Compiling libnano/cymem/cymem.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,779 Compiling libnano/search/seedmatch.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,779 Compiling libnano/seqint.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,779 Compiling libnano/seqstr.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,779 Compiling libnano/seqgraph.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,779 Compiling libnano/metric/seqscreen.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,780 Compiling libnano/metric/seqmetric.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,780 Compiling libnano/seqrecord/feature.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,780 Compiling libnano/seqrecord/seqrecordbase.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-13T18:52:41,780 [ 1/10] Cythonizing libnano/cymem/cymem.pyx 2021-07-13T18:52:41,936 WARNING: Discarding https://files.pythonhosted.org/packages/77/e6/49f98e4537b0a2531fa36ed9e45e272f3ea4ac99a154e10628011d68e647/libnano-0.2.3.0.tar.gz#sha256=0c36b41f3d362d781a9bd98a6382b95fadca0a7393889839d75fad01d2679bf6 (from https://pypi.org/simple/libnano/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. 2021-07-13T18:52:41,938 ERROR: Could not find a version that satisfies the requirement libnano==0.2.3.0 (from versions: 0.1.1.1, 0.1.1.3, 0.2.2.0, 0.2.3.0) 2021-07-13T18:52:41,938 ERROR: No matching distribution found for libnano==0.2.3.0 2021-07-13T18:52:41,938 Exception information: 2021-07-13T18:52:41,938 Traceback (most recent call last): 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 341, in resolve 2021-07-13T18:52:41,938 name, crit = self._merge_into_criterion(r, parent=None) 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _merge_into_criterion 2021-07-13T18:52:41,938 raise RequirementsConflicted(criterion) 2021-07-13T18:52:41,938 pip._vendor.resolvelib.resolvers.RequirementsConflicted: Requirements conflict: SpecifierRequirement('libnano==0.2.3.0') 2021-07-13T18:52:41,938 2021-07-13T18:52:41,938 During handling of the above exception, another exception occurred: 2021-07-13T18:52:41,938 2021-07-13T18:52:41,938 Traceback (most recent call last): 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 127, in resolve 2021-07-13T18:52:41,938 result = self._result = resolver.resolve( 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 473, in resolve 2021-07-13T18:52:41,938 state = resolution.resolve(requirements, max_rounds=max_rounds) 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/resolvelib/resolvers.py", line 343, in resolve 2021-07-13T18:52:41,938 raise ResolutionImpossible(e.criterion.information) 2021-07-13T18:52:41,938 pip._vendor.resolvelib.resolvers.ResolutionImpossible: [RequirementInformation(requirement=SpecifierRequirement('libnano==0.2.3.0'), parent=None)] 2021-07-13T18:52:41,938 2021-07-13T18:52:41,938 The above exception was the direct cause of the following exception: 2021-07-13T18:52:41,938 2021-07-13T18:52:41,938 Traceback (most recent call last): 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-13T18:52:41,938 status = self.run(options, args) 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-13T18:52:41,938 return func(self, options, args) 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 142, in run 2021-07-13T18:52:41,938 requirement_set = resolver.resolve( 2021-07-13T18:52:41,938 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/resolution/resolvelib/resolver.py", line 136, in resolve 2021-07-13T18:52:41,938 raise error from e 2021-07-13T18:52:41,938 pip._internal.exceptions.DistributionNotFound: No matching distribution found for libnano==0.2.3.0 2021-07-13T18:52:41,943 Removed libnano==0.2.3.0 from https://files.pythonhosted.org/packages/77/e6/49f98e4537b0a2531fa36ed9e45e272f3ea4ac99a154e10628011d68e647/libnano-0.2.3.0.tar.gz#sha256=0c36b41f3d362d781a9bd98a6382b95fadca0a7393889839d75fad01d2679bf6 from build tracker '/tmp/pip-req-tracker-ptxnoncb' 2021-07-13T18:52:41,943 Removed build tracker: '/tmp/pip-req-tracker-ptxnoncb'