2021-07-13T19:12:33,824 Created temporary directory: /tmp/pip-ephem-wheel-cache-823yknbq 2021-07-13T19:12:33,827 Created temporary directory: /tmp/pip-req-tracker-5xvao0_d 2021-07-13T19:12:33,828 Initialized build tracking at /tmp/pip-req-tracker-5xvao0_d 2021-07-13T19:12:33,828 Created build tracker: /tmp/pip-req-tracker-5xvao0_d 2021-07-13T19:12:33,828 Entered build tracker: /tmp/pip-req-tracker-5xvao0_d 2021-07-13T19:12:33,829 Created temporary directory: /tmp/pip-wheel-whal8slx 2021-07-13T19:12:33,858 1 location(s) to search for versions of motifscan: 2021-07-13T19:12:33,858 * https://pypi.org/simple/motifscan/ 2021-07-13T19:12:33,859 Fetching project page and analyzing links: https://pypi.org/simple/motifscan/ 2021-07-13T19:12:33,860 Getting page https://pypi.org/simple/motifscan/ 2021-07-13T19:12:33,861 Found index url https://pypi.org/simple 2021-07-13T19:12:33,951 Found link https://files.pythonhosted.org/packages/e4/ad/c99471abe222aa7fc17ca8f6cf272f96e137a877dab8a8b146049b0d8bb5/motifscan-1.1.tar.gz#sha256=e325d50e3a4aecbb772ff7a885190cd93305bb33fef18baa538fa2b038642284 (from https://pypi.org/simple/motifscan/), version: 1.1 2021-07-13T19:12:33,951 Found link https://files.pythonhosted.org/packages/12/fc/0974ba6cbffbbd9d6d4fd6e69f433d3a22c9936d2f85ff01f8d7e573bed9/motifscan-1.1.2.tar.gz#sha256=7ba31fed062fc1d228ac9178383dc12711bf4f65d98ade383eccf23a4abe0099 (from https://pypi.org/simple/motifscan/), version: 1.1.2 2021-07-13T19:12:33,952 Found link https://files.pythonhosted.org/packages/5c/ab/19b9e8656bdc2ee002c2c35f01019bff192a9f9e2ff56da990f5a1bc06c2/motifscan-1.2.0.tar.gz#sha256=2f9d98b4a1f15338bd8d1ce4b78fee379a9864bf9274487f0d744f74e8adef17 (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.2.0 2021-07-13T19:12:33,952 Found link https://files.pythonhosted.org/packages/c1/3c/9c7bcd71c2246cbfaaa78a5c7c6002096a256e00638e4f4df7ed6ec01c7b/motifscan-1.2.1.tar.gz#sha256=304e28989e23e0c8547a3cdce7c49fd31cbe873f6b9614be2e911f1fa1712aba (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.2.1 2021-07-13T19:12:33,953 Found link https://files.pythonhosted.org/packages/b9/5b/c6c585bab0dac094e112b9620c5b93e8fe7a69bda6317371894569c29259/motifscan-1.2.2.tar.gz#sha256=90259b116220f6448ddc7ce9578cc56c39a38ba792602acc04633d5a77bf7a65 (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.2.2 2021-07-13T19:12:33,954 Found link https://files.pythonhosted.org/packages/a9/25/9f149660e79c145c6bcc9a9d4ceb35f8c3eff10dcddce37014663c062d3d/motifscan-1.3.0.tar.gz#sha256=8059ab3232dfe7580835c5e953a8edd3f843676d57a6afbc41c5518a8a4dfde2 (from https://pypi.org/simple/motifscan/) (requires-python:>=3.6), version: 1.3.0 2021-07-13T19:12:33,954 Skipping link: not a file: https://pypi.org/simple/motifscan/ 2021-07-13T19:12:33,972 Given no hashes to check 1 links for project 'motifscan': discarding no candidates 2021-07-13T19:12:33,991 Collecting motifscan==1.1.2 2021-07-13T19:12:33,993 Created temporary directory: /tmp/pip-unpack-q_q9gtht 2021-07-13T19:12:37,574 Downloading motifscan-1.1.2.tar.gz (11.4 MB) 2021-07-13T19:12:40,248 Added motifscan==1.1.2 from https://files.pythonhosted.org/packages/12/fc/0974ba6cbffbbd9d6d4fd6e69f433d3a22c9936d2f85ff01f8d7e573bed9/motifscan-1.1.2.tar.gz#sha256=7ba31fed062fc1d228ac9178383dc12711bf4f65d98ade383eccf23a4abe0099 to build tracker '/tmp/pip-req-tracker-5xvao0_d' 2021-07-13T19:12:40,249 Running setup.py (path:/tmp/pip-wheel-whal8slx/motifscan_c64351f1c2944c589632c2478812b091/setup.py) egg_info for package motifscan 2021-07-13T19:12:40,250 Created temporary directory: /tmp/pip-pip-egg-info-91njukz9 2021-07-13T19:12:40,251 Running command python setup.py egg_info 2021-07-13T19:12:41,306 running egg_info 2021-07-13T19:12:41,308 creating /tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info 2021-07-13T19:12:41,309 writing /tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/PKG-INFO 2021-07-13T19:12:41,312 writing dependency_links to /tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/dependency_links.txt 2021-07-13T19:12:41,314 writing requirements to /tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/requires.txt 2021-07-13T19:12:41,315 writing top-level names to /tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/top_level.txt 2021-07-13T19:12:41,316 writing manifest file '/tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/SOURCES.txt' 2021-07-13T19:12:41,639 reading manifest file '/tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/SOURCES.txt' 2021-07-13T19:12:41,640 reading manifest template 'MANIFEST.in' 2021-07-13T19:12:41,641 warning: no files found matching 'README.md' 2021-07-13T19:12:41,661 adding license file 'LICENSE' 2021-07-13T19:12:41,666 writing manifest file '/tmp/pip-pip-egg-info-91njukz9/motifscan.egg-info/SOURCES.txt' 2021-07-13T19:12:41,743 Source in /tmp/pip-wheel-whal8slx/motifscan_c64351f1c2944c589632c2478812b091 has version 1.1.2, which satisfies requirement motifscan==1.1.2 from https://files.pythonhosted.org/packages/12/fc/0974ba6cbffbbd9d6d4fd6e69f433d3a22c9936d2f85ff01f8d7e573bed9/motifscan-1.1.2.tar.gz#sha256=7ba31fed062fc1d228ac9178383dc12711bf4f65d98ade383eccf23a4abe0099 2021-07-13T19:12:41,744 Removed motifscan==1.1.2 from https://files.pythonhosted.org/packages/12/fc/0974ba6cbffbbd9d6d4fd6e69f433d3a22c9936d2f85ff01f8d7e573bed9/motifscan-1.1.2.tar.gz#sha256=7ba31fed062fc1d228ac9178383dc12711bf4f65d98ade383eccf23a4abe0099 from build tracker '/tmp/pip-req-tracker-5xvao0_d' 2021-07-13T19:12:41,749 Created temporary directory: /tmp/pip-unpack-ndo0o6bx 2021-07-13T19:12:41,749 Building wheels for collected packages: motifscan 2021-07-13T19:12:41,754 Created temporary directory: /tmp/pip-wheel-sbdovf7n 2021-07-13T19:12:41,755 Building wheel for motifscan (setup.py): started 2021-07-13T19:12:41,755 Destination directory: /tmp/pip-wheel-sbdovf7n 2021-07-13T19:12:41,755 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-whal8slx/motifscan_c64351f1c2944c589632c2478812b091/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-whal8slx/motifscan_c64351f1c2944c589632c2478812b091/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sbdovf7n 2021-07-13T19:12:42,819 running bdist_wheel 2021-07-13T19:12:42,977 running build 2021-07-13T19:12:42,977 running build_py 2021-07-13T19:12:43,118 creating build 2021-07-13T19:12:43,118 creating build/lib.linux-armv7l-3.9 2021-07-13T19:12:43,119 creating build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,120 copying motifscan/workflow.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,122 copying motifscan/stats.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,124 copying motifscan/__init__.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,126 copying motifscan/core.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,128 copying motifscan/enrich.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,130 copying motifscan/utils.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,132 copying motifscan/plot.py -> build/lib.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,135 creating build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,136 copying motifscan/lib/motif.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,138 copying motifscan/lib/__init__.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,139 copying motifscan/lib/genome.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,142 copying motifscan/lib/peak.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,144 copying motifscan/lib/matrix.py -> build/lib.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,147 creating build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,148 copying motifscan/io/geneio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,150 copying motifscan/io/__init__.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,151 copying motifscan/io/motifio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,154 copying motifscan/io/outputwriter.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,155 copying motifscan/io/genomeio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,157 copying motifscan/io/peakio.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,159 copying motifscan/io/constants.py -> build/lib.linux-armv7l-3.9/motifscan/io 2021-07-13T19:12:43,164 running build_ext 2021-07-13T19:12:43,170 building 'motifscan.score_c' extension 2021-07-13T19:12:43,170 creating build/temp.linux-armv7l-3.9 2021-07-13T19:12:43,171 creating build/temp.linux-armv7l-3.9/motifscan 2021-07-13T19:12:43,171 creating build/temp.linux-armv7l-3.9/motifscan/lib 2021-07-13T19:12:43,172 g++ -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c motifscan/lib/score.cpp -o build/temp.linux-armv7l-3.9/motifscan/lib/score.o 2021-07-13T19:12:44,138 motifscan/lib/score.cpp: In function ‘MAT* expandMAT(double*, size_t)’: 2021-07-13T19:12:44,139 motifscan/lib/score.cpp:83:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-13T19:12:44,139 83 | for(i=0;i build/scripts-3.9 2021-07-13T19:12:44,991 copying and adjusting bin/motifcompile -> build/scripts-3.9 2021-07-13T19:12:44,993 copying and adjusting bin/genomecompile -> build/scripts-3.9 2021-07-13T19:12:44,994 changing mode of build/scripts-3.9/motifscan from 644 to 755 2021-07-13T19:12:44,994 changing mode of build/scripts-3.9/motifcompile from 644 to 755 2021-07-13T19:12:44,994 changing mode of build/scripts-3.9/genomecompile from 644 to 755 2021-07-13T19:12:45,002 installing to build/bdist.linux-armv7l/wheel 2021-07-13T19:12:45,002 running install 2021-07-13T19:12:45,004 running install_lib 2021-07-13T19:12:45,008 creating build/bdist.linux-armv7l 2021-07-13T19:12:45,008 creating build/bdist.linux-armv7l/wheel 2021-07-13T19:12:45,010 creating build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,011 copying build/lib.linux-armv7l-3.9/motifscan/workflow.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,013 copying build/lib.linux-armv7l-3.9/motifscan/stats.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,016 creating build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-13T19:12:45,017 copying build/lib.linux-armv7l-3.9/motifscan/lib/motif.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-13T19:12:45,019 copying build/lib.linux-armv7l-3.9/motifscan/lib/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-13T19:12:45,021 copying build/lib.linux-armv7l-3.9/motifscan/lib/genome.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-13T19:12:45,023 copying build/lib.linux-armv7l-3.9/motifscan/lib/peak.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-13T19:12:45,026 copying build/lib.linux-armv7l-3.9/motifscan/lib/matrix.py -> build/bdist.linux-armv7l/wheel/motifscan/lib 2021-07-13T19:12:45,027 copying build/lib.linux-armv7l-3.9/motifscan/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,030 creating build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,031 copying build/lib.linux-armv7l-3.9/motifscan/io/geneio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,033 copying build/lib.linux-armv7l-3.9/motifscan/io/__init__.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,034 copying build/lib.linux-armv7l-3.9/motifscan/io/motifio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,037 copying build/lib.linux-armv7l-3.9/motifscan/io/outputwriter.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,038 copying build/lib.linux-armv7l-3.9/motifscan/io/genomeio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,040 copying build/lib.linux-armv7l-3.9/motifscan/io/peakio.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,042 copying build/lib.linux-armv7l-3.9/motifscan/io/constants.py -> build/bdist.linux-armv7l/wheel/motifscan/io 2021-07-13T19:12:45,044 copying build/lib.linux-armv7l-3.9/motifscan/core.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,046 copying build/lib.linux-armv7l-3.9/motifscan/enrich.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,048 copying build/lib.linux-armv7l-3.9/motifscan/utils.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,050 copying build/lib.linux-armv7l-3.9/motifscan/score_c.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,054 copying build/lib.linux-armv7l-3.9/motifscan/plot.py -> build/bdist.linux-armv7l/wheel/motifscan 2021-07-13T19:12:45,056 running install_egg_info 2021-07-13T19:12:45,079 running egg_info 2021-07-13T19:12:45,080 writing motifscan.egg-info/PKG-INFO 2021-07-13T19:12:45,082 writing dependency_links to motifscan.egg-info/dependency_links.txt 2021-07-13T19:12:45,084 writing requirements to motifscan.egg-info/requires.txt 2021-07-13T19:12:45,085 writing top-level names to motifscan.egg-info/top_level.txt 2021-07-13T19:12:45,091 reading manifest file 'motifscan.egg-info/SOURCES.txt' 2021-07-13T19:12:45,098 reading manifest template 'MANIFEST.in' 2021-07-13T19:12:45,099 warning: no files found matching 'README.md' 2021-07-13T19:12:45,117 adding license file 'LICENSE' 2021-07-13T19:12:45,122 writing manifest file 'motifscan.egg-info/SOURCES.txt' 2021-07-13T19:12:45,123 Copying motifscan.egg-info to build/bdist.linux-armv7l/wheel/motifscan-1.1.2-py3.9.egg-info 2021-07-13T19:12:45,136 running install_scripts 2021-07-13T19:12:45,197 creating build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data 2021-07-13T19:12:45,197 creating build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts 2021-07-13T19:12:45,198 copying build/scripts-3.9/genomecompile -> build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts 2021-07-13T19:12:45,200 copying build/scripts-3.9/motifscan -> build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts 2021-07-13T19:12:45,202 copying build/scripts-3.9/motifcompile -> build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts 2021-07-13T19:12:45,204 changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts/genomecompile to 755 2021-07-13T19:12:45,204 changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts/motifscan to 755 2021-07-13T19:12:45,204 changing mode of build/bdist.linux-armv7l/wheel/motifscan-1.1.2.data/scripts/motifcompile to 755 2021-07-13T19:12:45,225 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-13T19:12:45,230 creating build/bdist.linux-armv7l/wheel/motifscan-1.1.2.dist-info/WHEEL 2021-07-13T19:12:45,232 creating '/tmp/pip-wheel-sbdovf7n/motifscan-1.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-13T19:12:45,235 adding 'motifscan/__init__.py' 2021-07-13T19:12:45,236 adding 'motifscan/core.py' 2021-07-13T19:12:45,238 adding 'motifscan/enrich.py' 2021-07-13T19:12:45,239 adding 'motifscan/plot.py' 2021-07-13T19:12:45,249 adding 'motifscan/score_c.cpython-39-arm-linux-gnueabihf.so' 2021-07-13T19:12:45,250 adding 'motifscan/stats.py' 2021-07-13T19:12:45,252 adding 'motifscan/utils.py' 2021-07-13T19:12:45,254 adding 'motifscan/workflow.py' 2021-07-13T19:12:45,256 adding 'motifscan/io/__init__.py' 2021-07-13T19:12:45,257 adding 'motifscan/io/constants.py' 2021-07-13T19:12:45,258 adding 'motifscan/io/geneio.py' 2021-07-13T19:12:45,259 adding 'motifscan/io/genomeio.py' 2021-07-13T19:12:45,261 adding 'motifscan/io/motifio.py' 2021-07-13T19:12:45,262 adding 'motifscan/io/outputwriter.py' 2021-07-13T19:12:45,263 adding 'motifscan/io/peakio.py' 2021-07-13T19:12:45,265 adding 'motifscan/lib/__init__.py' 2021-07-13T19:12:45,267 adding 'motifscan/lib/genome.py' 2021-07-13T19:12:45,268 adding 'motifscan/lib/matrix.py' 2021-07-13T19:12:45,269 adding 'motifscan/lib/motif.py' 2021-07-13T19:12:45,271 adding 'motifscan/lib/peak.py' 2021-07-13T19:12:45,274 adding 'motifscan-1.1.2.data/scripts/genomecompile' 2021-07-13T19:12:45,275 adding 'motifscan-1.1.2.data/scripts/motifcompile' 2021-07-13T19:12:45,277 adding 'motifscan-1.1.2.data/scripts/motifscan' 2021-07-13T19:12:45,279 adding 'motifscan-1.1.2.dist-info/LICENSE' 2021-07-13T19:12:45,280 adding 'motifscan-1.1.2.dist-info/METADATA' 2021-07-13T19:12:45,281 adding 'motifscan-1.1.2.dist-info/WHEEL' 2021-07-13T19:12:45,282 adding 'motifscan-1.1.2.dist-info/top_level.txt' 2021-07-13T19:12:45,283 adding 'motifscan-1.1.2.dist-info/RECORD' 2021-07-13T19:12:45,285 removing build/bdist.linux-armv7l/wheel 2021-07-13T19:12:45,384 Building wheel for motifscan (setup.py): finished with status 'done' 2021-07-13T19:12:45,386 Created wheel for motifscan: filename=motifscan-1.1.2-cp39-cp39-linux_armv7l.whl size=51957 sha256=e70b67f37fd5c0238f255527ce98edffb5bbd062a45c883360b678bb671e7b90 2021-07-13T19:12:45,387 Stored in directory: /tmp/pip-ephem-wheel-cache-823yknbq/wheels/91/2c/fa/d084066051b8b5996e479afa48801055fb12e269e8f2404990 2021-07-13T19:12:45,396 Successfully built motifscan 2021-07-13T19:12:45,401 Removed build tracker: '/tmp/pip-req-tracker-5xvao0_d'